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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 988 fasta sequence
[CGTCCCTTTTTTTTTCGGGCTTAGGTTTTTTTCCGCCGTTTTTCTTTTCTTATTTCGTTTTTTCTCCTTTCTTTTTGCCTTTTGGGCTTTTTTTTTCTACCTTCCCTCTAATCAGGGTTCAAAATTTCGGAACGAAATTTACGAAATTTCGGGTCTATTGGTGGGTCCTGATAAACATGAGCTCCGGTCAAAAATTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCCCCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAGCAGGCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAACCGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACGACGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAAAGTTGCCGCTGGCGGCTCCATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGCATCCTTACGTGTTACTGTGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCGATGCTCATCTATACTCTGATCTTGGTAAAATTTCTTTATTTTTATTGTTTAAATTCAAATTTTGTTTGAAAATTCCGTTCGAAATTTCTGAAAGATTTTCGAAATTTCGGTGACCCCTGAAATTTTTCCCCTTCCCGATAGATTGAACCCTGCCTCCAATTCTTACCCAGGCAAATGATTATCTCGGTTGAAATTTTCGATTTTTCTAACTTTTTTGTGAATTTAGTCAAATTCAGTTAAATTGTGTTAAAATTTCAAAAAATGGTCTAAAAAACGCCGAAAATCCCAAAAATCCAGAAATTTCGTTTCTACCAAAATGGCCGAAATTTTTGGCGCGAAAGTGAAAACCTTGTACTATAAAACCAATCGTGTGAAAGTACTTTAATTAA]
[+] EMBL CB636086 [CGTCCCTTTTTTTTTCGGGCTTAGGTTTTTTTCCGCCGTTTTTCTTTTCTTATTTCGTTTTTTCTCCTTTCTTTTTGCCTTTTGGGCTTTTTTTTTCTACCTTCCCTCTAATCAGGGTTCAAAATTTCGGAACGAAATTTACGAAATTTCGGGTCTATTGGTGGGTCCTGATAAACATGAGCTCCGGTCAAAAATTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCCCCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAGCAGGCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAACCGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACGACGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAAAGTTGCCGCTGGCGGCTCCATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGCATCCTTACGTGTTACTGTGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCGATGCTCATCTATACTCTGA ]
[+] EMBL CB657962 [ tctttttTTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCCCCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAGCAGGCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAACCGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACGACGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAGAGTTGCCGCTGGCGGCTCCATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGCATCCTTACGTGTTAC TGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCGATGCTCATCTATACTCTGATCTTGGTAAAATTTCTTTATTTTTATTGTTTAAATTCAAATTTTGTTTGAAAATTCCGTTCGAAATTTCTGAAAGATTTTCGAAATTTCGGTGACCCCTGAAATTTTTCCCCTTCCCGATAGATTGAACCCTGCCTCCAATTCTTACCCAGGCAAATGATTATCTCGGTTGAAATTTTCGATTTTTCTAACTTTTTTGTGAATTTAGTCAAATTCAGTTAAATTGTGTTAAAATTTCAAAAAATGGTCTAAAAAACGCCGAAAATCCCAAAAATCCAGAAATTTCGTTTCTACCAAAATGGCCGAAATTTTTGGCGCGAAAGTGAAAACCTTGTACTATAAAACCAATCGTGTGAAAGTACTTTAATTAA]
consensusID : consensus_9911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 422 fasta sequence
[TACCAAAGGCGGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCTAA]
[+] EMBL AK105379 [TACCAAAGGCGGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGAT ]
[+] EMBL CF339955 [ GGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCTAA]
[+] EMBL CF339847 [ GGCTGCTGCTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCTAA]
[+] EMBL CF339626 [ CTTCGCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACACAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATCCTTGCGTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCGATGCTTATCTAA]
[+] EMBL CF339251 [ GCTATCCTCCTGCAGCTCGCCCAGCAGGCAGCAGGTCGCCGTCCTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGTTGGAGTGGCCAGCGGCGGCGCTCCACGGCGCGACGACGACTCAAGCCGCGTGGGCCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACGACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGNCGGCGGCTCCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGCATACTTGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9911#0 CGTCCCTTTTTTTTTCGGGCTTAGGTTTTTTTCCGCCGTTTTTCTTTTCTTATTTCGTTT 60
consensus_9911#1 ------------------------------------------------------------
consensus_9911#0 TTTCTCCTTTCTTTTTGCCTTTTGGGCTTTTTTTTTCTACCTTCCCTCTAATCAGGGTTC 120
consensus_9911#1 ------------------------------------------------------------
consensus_9911#0 AAAATTTCGGAACGAAATTTACGAAATTTCGGGTCTATTGGTGGGTCCTGATAAACATGA 180
consensus_9911#1 ------------------------------------------------TACCAAAGGCGG 12
* *** *
consensus_9911#0 GCTCCGGTCAAAAATTTCGGCAAAACAATGTTCATGGTAAAAATCCTCAATTTCCTATCC 240
consensus_9911#1 CTGCTGCTTCGCTATCCTCCTGCAGC-----TCGCC-CAGCAGGCAGCAGGTCGCCGTC- 65
* * * ** * * ** * * * ** * * **
consensus_9911#0 CCTCCTCACTTATATACCAAAGGCTGCTGCTGCTTCGCTATCCTCCGACAGCTCGCCCAG 300
consensus_9911#1 -CTCCCAAGCTAGCGAACAGCGGCGGCGGCGGTGACCGGAACCGAAGGCGGCGGGTTGGT 124
**** * ** * ** *** ** ** * * * ** * * ** *
consensus_9911#0 CAG-GCAGCAGGTCGCCATCCTCCCAAGCTAGCGAACAGCGGCCGCGGCGGTGGCCGGAA 359
consensus_9911#1 TGGAGTGGCCAGCGGCGGCGCTCCACGGC------GCGACGACGACACAAGCCGCGTGGG 178
* * ** * ** **** ** * ** * * * ** *
consensus_9911#0 CCGGAGGCGGCGGGTTGGTTGGAGTGGCCGGCGGCGTCTCCGTGGCTCTTCGGCACCACG 419
consensus_9911#1 CCTCGCGAGGCTGGACTTCTGGAGTGGCCGGCGGCGTCTCTGCGGCTCTTCAGCACCACG 238
** * *** ** ********************* * ******** ********
consensus_9911#0 ACGACGATACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTAAAGTTGCCGCTGGCGGCT 479
consensus_9911#1 ACGACGACACAAGCCGCGGGCCTCGCATCCTCCGTTTGGCTGGAGTTGCCGCCGGCGGCT 298
******* ********************************* ********* *******
consensus_9911#0 CCATCGCTCTTCGGCAGCACGACGATGACCGGACGACGACACAAGCCGCACAAGCCTCGC 539
consensus_9911#1 CCATCGCTCTTCGGCAGCACGACGACGACCGGACGATGACACAAGCCGCACTAGCCTTGC 358
************************* ********** ************** ***** **
consensus_9911#0 ATCCTTACGTGTTACTGTGTTTCAATCTCCTGTTCCTCTGCTTTGGATTGAATAGACTCG 599
consensus_9911#1 ATCCTTGC--------GTGTTTCATTCTCTTGTTCCTCTGCTTTGGATTTAATAGACTCG 410
****** * ******** **** ******************* **********
consensus_9911#0 ATGCTCATCTATACTCTGATCTTGGTAAAATTTCTTTATTTTTATTGTTTAAATTCAAAT 659
consensus_9911#1 ATGCTTATCTAA------------------------------------------------ 422
***** *****
consensus_9911#0 TTTGTTTGAAAATTCCGTTCGAAATTTCTGAAAGATTTTCGAAATTTCGGTGACCCCTGA 719
consensus_9911#1 ------------------------------------------------------------
consensus_9911#0 AATTTTTCCCCTTCCCGATAGATTGAACCCTGCCTCCAATTCTTACCCAGGCAAATGATT 779
consensus_9911#1 ------------------------------------------------------------
consensus_9911#0 ATCTCGGTTGAAATTTTCGATTTTTCTAACTTTTTTGTGAATTTAGTCAAATTCAGTTAA 839
consensus_9911#1 ------------------------------------------------------------
consensus_9911#0 ATTGTGTTAAAATTTCAAAAAATGGTCTAAAAAACGCCGAAAATCCCAAAAATCCAGAAA 899
consensus_9911#1 ------------------------------------------------------------
consensus_9911#0 TTTCGTTTCTACCAAAATGGCCGAAATTTTTGGCGCGAAAGTGAAAACCTTGTACTATAA 959
consensus_9911#1 ------------------------------------------------------------
consensus_9911#0 AACCAATCGTGTGAAAGTACTTTAATTAA 988
consensus_9911#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||