These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1392 fasta sequence [GGCAGATCTCCCCATCTCCGGGACGGGACCCGGCGCGCACGCGACCCGACGCGACGACGCAAGCAGCAGTGGTGGGTAAGGGTGGACTCGACTCCGGCCGTCGCGATGGCGGCCGCCGGCTGGCCGCTCTCCTCCTCCGTCGCCGACCTCCTCCCCGCCTCCCTCTCGCTCACCCTCCTCCTCGCCTCCCTCGTGGTCGTCGTGGTGCTGGCCGCCGCCGCCTTCTTCTTCGAGCACATCCGCAAGATCGGATGCACGCACTCGCTGGAGAGGACTGAAGTCTCGGCCGCTTTCTTCGAGGACCCCAACTCGCTCAACAAGGTTCGTTGCCCTTCAATTTACGACCCTGCTGAGAAGTACATTTCGTTGATCATCCCCGCTTATAACGAGGAGCACCGGCTTCCTGAGGCTCTCACAGAAACACTCAACTACCTGAAACAACGTTCAGCTGTCGAGAAGTCATTTACTTACGAGGTCTTGATCGTTGATGATGGAAGTACTGATCATACATCAAAAGTTGCCTTCGAGTTTGTAAGGAAACATAAAATTGATAATGTTAGAGTTCTTCTACTTGGGAGAAACCATGGTAAAGGCGAAGCAGTCAGAAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTGATGCTGATGGGGCAACTAAGGTTACTGATTTGGAAAAGCTTGAAGCCCAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATCTAGCAGTCCATCTCAGAGACTATCTGATGCTGAAATTGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGTATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTTTTATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATTGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCATCTCAGGATCCCAATGGCTGAAGTATCTGTAAACT-GGACTGAAATACCTGGATCCAAAGTGCGTATGACAAGCATCCTGCATAT-GGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGACTGAGCATATGGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCACCATAGCTTATCATCACTGGACTGTATACCAAGCTTAGTCTCACATGTAAAATTTTTCCAAGATTTTCACCTAGAGAGAATCCATTTGTGGCGCTGAGTATTCCATCATAGATTTCAACAAAGATATAGATCAC-GTGTATTGTTCCTGCTGATAAAGGTCTTTAATCATTTTTTTAGCATTTTAAAAAAAACAAAAAAGGA] [+] EMBL AK102290 [GGCAGATCTCCCCATCTCCGGGACGGGACCCGGCGCGCACGCGACCCGACGCGACGACGCAAGCAGCAGTGGTGGGTAAGGGTGGACTCGACTCCGGCCGTCGCGATGGCGGCCGCCGGCTGGCCGCTCTCCTCCTCCGTCGCCGACCTCCTCCCCGCCTCCCTCTCGCTCACCCTCCTCCTCGCCTCCCTCGTGGTCGTCGTGGTGCTGGCCGCCGCCGCCTTCTTCTTCGAGCACATCCGCAAGATCGGATGCACGCACTCGCTGGAGAGGACTGAAGTCTCGGCCGCTTTCTTCGAGGACCCCAACTCGCTCAACAAGGTTCGTTGCCCTTCAATTTACGACCCTGCTGAGAAGTACATTTCGTTGATCATCCCCGCTTATAACGAGGAGCACCGGCTTCCTGAGGCTCTCACAGAAACACTCAACTACCTGAAACAACGTTCAGCTGTCGAGAAGTCATTTACTTACGAGGTCTTGATCGTTGATGATGGAAGTACTGATCATACATCAAAAGTTGCCTTCGAGTTTGTAAGGAAACATAAAATTGATAATGTTAGAGTTCTTCTACTTGGGAGAAACCATGGTAAAGGCGAAGCAGTCAGAAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTGATGCTGATGGGGCAACTAAGGTTACTGATTTGGAAAAGCTTGAAGCCCAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATCTAGCAGTCCATCTCAGAGACTATCTGATGCTGAAATTGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGTATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTTTTATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATTGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCATCTCAGGATCCCAATGGCTGAAGTATCTGTAAACT GGACTGAAATACCTGGATCCAAAGTGCGTATGACAAGCATCCTGCATAT GGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGACTGAGCATATGGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCACCATAGCTTATCATCACTGGACTGTATACCAAGCTTAGTCTCACATGTAAAATTTTTCCAAGATTTTCACCTAGAGAGAATCCATTTGTGGCGCTGAGTATTCCATCATAGATTTCAACAAAGATATAGATCAC GTGTAT ] [+] EMBL CB656726 [ CCCCCTCTCCGGGACGGGACCCGGCGCGCACGCGACCCGACGCGACGACGCAAGCAGCAGTGGTGGGTAAGGGTGGACTCGACTCCGGCCGTCGCGATGGCGGCCGCCGGCTGGCCGCTCTCCTCCTCCGTCGCCGACCTCCTCCCCGCCTCCCTCTCGCTCACCCTCCTCCTCGCCTCCCTCGTGGTCGTCGTGGTGCTGGCCGCCGCCGCCTTCTTCTTCGAGCACATCCGCAAGATCGGATGCACGCACTCGCTGGAGAGGACTGAAGTCTCGGCCGCTTTCTTCGAGGACCCCAACTCGCTCAACAAGGTTCGTTGCCCTTCAATTTACGACCCTGCTGAGAAGTACATTTCGTTGATCATCCCCGCTTATAACGAGGAGCACCGGCTTCCTGAGGCTCTCACAGAAACACTCAACTACCTGAAACAACGTTCAGCTGTCGAGAAGTCATTTACTTACGAGGTCTTGATCGTTGATGATGGAAGTACTGATCATACATCAAAAGTTGCCTTCGAGTTTGTAAGGAAACATAAAATTGATAATGTTAGAGTTCTTCTACTTGGGAGAAACCATGGTAAAGGCGAAGCAGTCAGAAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTGATGCTGATGGGGCAACTAAGGTTACTGATTTGGAAAAGCTTGAAGCCCAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATCTAGCAGTCCATCTCAGAGACTATCTGATGCTNGAATTGCTGTTTTTGGTTCAC ] [-] EMBL CB678881 [ AGGCGAAGCAGTCAGAAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTGATGCTGATGGGGCAACTAAGGTTATTGATTTGGAAAAGCTTGAAGCCCAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATTTAGCAGTCCATCTCAGAGACTATCTGATGCTGAAATTGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGTATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTTTTATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATTGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCATCTCAGGATCCCAATGGCTGAAGTATCTGTAAACT GGACTGAAATACCTGGATCCAAAGTGGGTATGACAAGCATCCTGCATAT GGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGACTGAGCATATGGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCCCCATAGCTTATCATCACTGGACTGTATACCAAGCTTAGTCTCACATGTAAAATTTTTCCAAGATTTTCCCCTAGAGAGAATCCATTTGTGGCGCTGAGTATTCCATCATAGATTTCAACAAAGATATAGATCAC GTGTATTGTTCCTGCTGATAAAGGTCTTTAATCATTTTTTTAGCATTTTAAAAAAAACAAAAAAGGA] [+] EMBL OSC0811 [ TGAAGCCCAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATCTAGCAGTCCATCTCAGAGACTATCTGATGCTGAAATTGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGTATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTTTTATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATTGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCATCTCAGGATCCCAATGGCTGAAGTATCTGTAAACTGGGACTGAAATACCTGGATCCCAAGTGCGTATGACAAGCATCCTGCATATGGGTATTTTAGCTCCTGCTGATCAAAGTAGGTT ] [+] EMBL AU174353 [ ACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATTGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCATCTCAGGATCCCAATGGCTGAAGTATCTGTAAACT GGACTGAAATACCTGGATCCAAAGTGCGTATGACAAGCATCCTGCATAT GGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGACTGAGCATATGGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCACCATAGCTTATCATCACTGGACTGTATACCAAGCTTAGTCTCACATGTAAAATTTTTCCAAGATTTTCACCTAGAGAGAATCCATTTGTGGCGCTGAGTATTCCATCATAGATTTCAACAAAGATATAGATCACTGTGTATTGTTCCTGCTAAAAA ] [-] EMBL D42582 [ AAGT CGTATGACAAGCATCCTGCATAT GGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGACTGAGCATATGGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCACCATAGCTTATCATCACTGGACTGTATACCAAGCTTAGTCTCACATGTAAAATTTTTCCAAGATTTTCACCTAGAGAGAATCCATTTGTGGNGCTGAGTATTCCATCATAGATTTCAACAAAGATATAGATCAC GTGTATTGTTCCTGCTGATGAAATTCTT ] consensusID : consensus_9918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [AAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTGATGCTGATGGGGCAACTAAGGTTACTGATTTGGAAAAGCTTGAAGCCCAGGTCTGTCATAAGTTAAATCAAAACATGTTTTATAAAGTTTTGTTATGCATACTTTGATCGTGATTGGTAACATCTTGGAATCATATCGTGCTCCTAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATCTAACAGTCCATCTCAGAGACTATCTGATGCTGAAATNGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGTATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTNTTATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTNTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATNGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCACCTCAGGATCCCAATGGCTGAAGTATCTGTANACTGGACTGAAATACCTGGATCCAAAGTGCGTATACAAGCATCTGCATATGGTATTGAGCT] [+] EMBL CA753095 [AAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTGATGCTGATGGGGCAACTAAGGTTACTGATTTGGAAAAGCTTGAAGCCCAGGTCTGTCATAAGTTAAATCAAAACATGTTTTATAAAGTTTTGTTATGCATACTTTGATCGTGATTGGTAACATCTTGGAATCATATCGTGCTCCTAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATCTAACAGTCCATCTCAGAGACTATCTGATGCTGAAATNGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGTATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTNTTATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTNTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATNGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCACCTCAGGATCCCAATGGCTGAAGTATCTGTANACTGGACTGAAATACCTGGATCCAAAGTGCGTATACAAGCATCTGCATATGGTATTGAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9918#0 GGCAGATCTCCCCATCTCCGGGACGGGACCCGGCGCGCACGCGACCCGACGCGACGACGC 60 consensus_9918#1 ------------------------------------------------------------ consensus_9918#0 AAGCAGCAGTGGTGGGTAAGGGTGGACTCGACTCCGGCCGTCGCGATGGCGGCCGCCGGC 120 consensus_9918#1 ------------------------------------------------------------ consensus_9918#0 TGGCCGCTCTCCTCCTCCGTCGCCGACCTCCTCCCCGCCTCCCTCTCGCTCACCCTCCTC 180 consensus_9918#1 ------------------------------------------------------------ consensus_9918#0 CTCGCCTCCCTCGTGGTCGTCGTGGTGCTGGCCGCCGCCGCCTTCTTCTTCGAGCACATC 240 consensus_9918#1 ------------------------------------------------------------ consensus_9918#0 CGCAAGATCGGATGCACGCACTCGCTGGAGAGGACTGAAGTCTCGGCCGCTTTCTTCGAG 300 consensus_9918#1 ------------------------------------------------------------ consensus_9918#0 GACCCCAACTCGCTCAACAAGGTTCGTTGCCCTTCAATTTACGACCCTGCTGAGAAGTAC 360 consensus_9918#1 ------------------------------------------------------------ consensus_9918#0 ATTTCGTTGATCATCCCCGCTTATAACGAGGAGCACCGGCTTCCTGAGGCTCTCACAGAA 420 consensus_9918#1 ------------------------------------------------------------ consensus_9918#0 ACACTCAACTACCTGAAACAACGTTCAGCTGTCGAGAAGTCATTTACTTACGAGGTCTTG 480 consensus_9918#1 ------------------------------------------------------------ consensus_9918#0 ATCGTTGATGATGGAAGTACTGATCATACATCAAAAGTTGCC-TTCGAGTTTGTAAGGAA 539 consensus_9918#1 ---------AAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTG------- 44 * * * ** ** * * ** ** * *** consensus_9918#0 ACATAAAATTGATAATGTTAGAGTTCTTCTACTTGGGAGAAACCATGGTAAAGGCGAAGC 599 consensus_9918#1 --ATGCTGATGGGGCAACTAAGGTTACTG-ATTTGGAAAAGCTTGAAGCCCAGGTCTGTC 101 ** ** ** *** * * **** * * * *** * consensus_9918#0 AGTCAGAAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTT-GATGCTGATG 658 consensus_9918#1 A-TAAGTTAAATCAAAACATGTTT-TATAAAGTTTTGTTATGCATACTTTGATCGTGATT 159 * * ** ** ** ** * * ***** *** *** *** **** consensus_9918#0 GGGCAACTAAGGTTACTGATTTGGAAAAGCTTGAAGCCCAGGTTCGCGCATTGGCTAAAA 718 consensus_9918#1 GG-----TAACATCTTGGAATCATATCGTGCT----CCTAGGTTCGCGCATTGGCTAAAA 210 ** *** * ** * * * ** ********************* consensus_9918#0 AGGCTGAGTCCAGCCTAGCACCATCTAGCAGTCCATCTCAGAGACTATCTGATGCTGAAA 778 consensus_9918#1 AGGCTGAGTCCAGCCTAGCACCATCTAACAGTCCATCTCAGAGACTATCTGATGCTGAAA 270 *************************** ******************************** consensus_9918#0 TTGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGT 838 consensus_9918#1 TNGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGT 330 * ********************************************************** consensus_9918#0 ATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTTTTATTGACAGCTGGTCCTGGGA 898 consensus_9918#1 ATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTNTTATTGACAGCTGGTCCTGGGA 390 ************************************* ********************** consensus_9918#0 TCAGAGACACACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTA 958 consensus_9918#1 TCAGAGACACACAGTGTGGTNTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTA 450 ******************** *************************************** consensus_9918#0 CAAATATCAGATTGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCATC 1018 consensus_9918#1 CAAATATCAGATNGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCACC 510 ************ ********************************************* * consensus_9918#0 TCAGGATCCCAATGGCTGAAGTATCTGTAAACTGGACTGAAATACCTGGATCCAAAGTGC 1078 consensus_9918#1 TCAGGATCCCAATGGCTGAAGTATCTGTANACTGGACTGAAATACCTGGATCCAAAGTGC 570 ***************************** ****************************** consensus_9918#0 GTATGACAAGCATCCTGCATATGGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGAC 1138 consensus_9918#1 GTAT-ACAAGCATC-TGCATATGGTATT-GAGCT-------------------------- 601 **** ********* ************* ***** consensus_9918#0 TGAGCATATGGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCACCATAGC 1198 consensus_9918#1 ------------------------------------------------------------ consensus_9918#0 TTATCATCACTGGACTGTATACCAAGCTTAGTCTCACATGTAAAATTTTTCCAAGATTTT 1258 consensus_9918#1 ------------------------------------------------------------ consensus_9918#0 CACCTAGAGAGAATCCATTTGTGGCGCTGAGTATTCCATCATAGATTTCAACAAAGATAT 1318 consensus_9918#1 ------------------------------------------------------------ consensus_9918#0 AGATCACGTGTATTGTTCCTGCTGATAAAGGTCTTTAATCATTTTTTTAGCATTTTAAAA 1378 consensus_9918#1 ------------------------------------------------------------ consensus_9918#0 AAAACAAAAAAGGA 1392 consensus_9918#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||