cluster # 9920

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Oryza sativa
cluster # 9920 cluster # 9920 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9920#0 length = 1672 sequences # 4

consensus_9920#1 length = 1652 sequences # 1
consensus_9920#2 length = 801 sequences # 2

consensusID : consensus_9920#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1672
fasta sequence

                              [CCCCAATTTTAAACTCCCTTCTCTCTCTCTCTCGTCGTCGTCGTCCACCGCCGCAAAGGGGTCTCGTCTCTCTCGGGGGCGATGGCGGCGTCGTCGTCGTCGTCGTCGTCGATGGCGTCGCCGAGGGGGAGGTCGATCCGGGAGACGGTGCTGGAGACGGTGGCGGCGTACCACCAGCAGCAGAGGATGAGGCGCAAGTTCAGGAAGAGCCTCTCCTACGCGGGGGAGCTGTCGCCGCGCTCGCCTCATTCTATGCCAAGAAGGTTGAGGCTGGACTCAAGAAGTACAAACCAGATATTATAATTAGTGTCCACCCCCTCATGCAACACATTCCTCTATGGGTACTCAAATGGCAAGGGCTACAAAATAGAGTGGTCTTTGTCACTGTCATCACAGACCTCAACACTTGTCACCCTACATGGTTCCATGCTGATGTCAATAGATGTTACTGCCCATCGGAAGAAGTTGCCAAGAGAGCAGCACTGGATGACCTACAACCTTCTCAAATCCGTGTGTTTGGCCTTCCGATTCGGCCATCATTCTGCCGAGCCGTTCTTGTTAAGGATGATTTGAGGAAGGAACTTGAATTGGATCCTGAGCTGCCTGCAGTATTGCTGATGGGAGGTGGAGAGGGCATGGGTCCTGTCAAGAAGACCGCAAAAGCCCTTGGAGAGTCGTTGTTTGACAAGGAGCTTGGAAAACCAATTGGACAGTTAATTGTCATTTGTGGTCGGAACAAAACGCTGAGCTCCTCATTGCAGGCTCTTGAATGGAAAATACCAATTAAGGTTAGGGGATTTGAGACCCAGATGGAGAAATGGATGGGGGCTTGTGATTGCATTATAACAAAGGCTGGACCAGGTACCATCGCCGAAGCCTTGATTAGAGGGTTGCCTATCATCCTTAATGACTTCATACCTGGACAGGAAGTTGGCAATGTCCCTTATGTTGTGGACAATGGTGCTGGTGTCTTCTCCAAAAGTTCTAGGGAAACTGCTAAACTTGTTGCCCGCTGGTTTGGTCCAGATTCTGATGAACTGAAGAGGATGTCAGAAAAAGCGTTAAAACTGGCTCAGCCAGAAGCGGTGTTTGATATTGTCAGAGACATCCATGAGCTATCTCGGGAGCAAGGGGTGATTTCACAGATATCCAGTTCCTTGACATCATCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTGTATAGCTAGAACTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAAAAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGATGAGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTCTCTCATGGTAGTTATGGGCTTGTTTGACTGACAGCTGCTCTTGTGTAATATCCATATTCGGTTTTTGTTAAAATCATTCGTTCATATGATTTTTTTTAAAAAATCCTGTCGTCCTTTGTTCAGAGGGACCAGCGATGGGCTGCAAATTGTACACTGTTAGTTGATGTTGGAAAGTTTAAACCTCTCGACTTGTAACATATCCATTCATGTAAGATCCATCGTGACTGTAAAGTGTATGAGACAATGACAAATTGTGCTAGTGAGAGAGTCATGTGCTTGTTGAAAAAA]

[+] EMBL AK100941             [CCCCAATTTTAAACTCCCTTCTCTCTCTCTCTCGTCGTCGTCGTCCACCGCCGCAAAGGGGTCTCGTCTCTCTCGGGGGCGATGGCGGCGTCGTCGTCGTCGTCGTCGTCGATGGCGTCGCCGAGGGGGAGGTCGATCCGGGAGACGGTGCTGGAGACGGTGGCGGCGTACCACCAGCAGCAGAGGATGAGGCGCAAGTTCAGGAAGAGCCTCTCCTACGCGGGGGAGCTGTCGCCGCGCTCGCCTCATTCTATGCCAAGAAGGTTGAGGCTGGACTCAAGAAGTACAAACCAGATATTATAATTAGTGTCCACCCCCTCATGCAACACATTCCTCTATGGGTACTCAAATGGCAAGGGCTACAAAATAGAGTGGTCTTTGTCACTGTCATCACAGACCTCAACACTTGTCACCCTACATGGTTCCATGCTGATGTCAATAGATGTTACTGCCCATCGGAAGAAGTTGCCAAGAGAGCAGCACTGGATGACCTACAACCTTCTCAAATCCGTGTGTTTGGCCTTCCGATTCGGCCATCATTCTGCCGAGCCGTTCTTGTTAAGGATGATTTGAGGAAGGAACTTGAATTGGATCCTGAGCTGCCTGCAGTATTGCTGATGGGAGGTGGAGAGGGCATGGGTCCTGTCAAGAAGACCGCAAAAGCCCTTGGAGAGTCGTTGTTTGACAAGGAGCTTGGAAAACCAATTGGACAGTTAATTGTCATTTGTGGTCGGAACAAAACGCTGAGCTCCTCATTGCAGGCTCTTGAATGGAAAATACCAATTAAGGTTAGGGGATTTGAGACCCAGATGGAGAAATGGATGGGGGCTTGTGATTGCATTATAACAAAGGCTGGACCAGGTACCATCGCCGAAGCCTTGATTAGAGGGTTGCCTATCATCCTTAATGACTTCATACCTGGACAGGAAGTTGGCAATGTCCCTTATGTTGTGGACAATGGTGCTGGTGTCTTCTCCAAAAGTTCTAGGGAAACTGCTAAACTTGTTGCCCGCTGGTTTGGTCCAGATTCTGATGAACTGAAGAGGATGTCAGAAAAAGCGTTAAAACTGGCTCAGCCAGAAGCGGTGTTTGATATTGTCAGAGACATCCATGAGCTATCTCGGGAGCAAGGGGTGATTTCACAGATATCCAGTTCCTTGACATCATCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTGTATAGCTAGAACTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAAAAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGATGAGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTCTCTCATGGTAGTTATGGGCTTGTTTGACTGACAGCTGCTCTTGTGTAATATCCATATTCGGTTTTTGTTAAAATCATTCGTTCATATGATTTTTTTTAAAAAATCCTGTCGTCCTTTGTTCAGAGGGACCAGCGATGGGCTGCAAATTGTACACTGTTAGTTGATGTTGGAAAGTTTAAACCTCTCGACTTGTAACATATCCATTCATGTAAGATCCATCGTGACTGTAAAGTGTATGAGACAATGACAAATTGTGCTAGTGAGAGAGTCATGTGC            ]
[+] EMBL OSS4361A             [                   TCTCTCTCTCTCTCGTCGTCGTCGTCCACCGCCGCAAAGGGGTCTCGTCTCTCTCGGGGGCGATGGCGGCGTCGTCGTCGTCGTCGTCGTCGATGGCGTCG CGAGGGGGAGGTCGATCCGGGAGACGGTGCTGGAGACGGTGGCGGCGTACCACCAGCAGCAGAGGATGAGGCGCAAGTTCAGGAAGAGCCTCTCCTACGCNGGGGAGCTGTCGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL BI306271             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGAAACATCCATGAGCTATTTCGGGAGCAAGGGGTGATTTCACAGATATCCAGTTCCTTGACATCATCCTTTTTCAAACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTGTATAGCTAGAACTGCATTTTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAAAAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGATGAGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTTTTTCATGGTAGTTATGGGCTTGTTTGACTGACAGCTGCTTTTGTGTAAAATCCATATTCGGTTTTTGTTAAAATCATTCGTTCATATGATTTTTTTAAAAAAATCCTGTTGTCCTTTGTTCAAAGGGACCAGCGATGGGCTGCAAATTGTACACTGTTAGTTGATGTTGGAAAGTTTAAACCTTTCGACTTGTAACATATCCATTCATGTAAGATCCATTGTGACTGTAAAGTGTATGAGACAATGACAAATTGTGCTAGTGAAAGAGTCATGTGCT           ]
[+] EMBL AU174327             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAAAAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGATGAGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTCTCTCATGGTAGTTATGGGCTTGTTTGACTGACAGCTGCTCTTGTGTAATATCCATATTCGGTTTTTGTTAAAATCATTCGTTCATATGATTTTTTTTAAAAAATCCTGTCGTCCTTTGTTCAGAGGGACCAGCGATGGGCTGCNAATTGTACACTGTTAGTTGATGTTGGAAAGTTTNAACCTCTCGACTTGTAACATATCCATTCATGTAAGATCCATCGTGACTGTAAAGTGTATGAGACAATGACAAATTGTGCTAGTGAGAGAGTCATGTGCTTGTTGAAAAAA]




>consensus_9920#0
CCCCAATTTTAAACTCCCTTCTCTCTCTCTCTCGTCGTCGTCGTCCACCGCCGCAAAGGG
GTCTCGTCTCTCTCGGGGGCGATGGCGGCGTCGTCGTCGTCGTCGTCGTCGATGGCGTCG
CCGAGGGGGAGGTCGATCCGGGAGACGGTGCTGGAGACGGTGGCGGCGTACCACCAGCAG
CAGAGGATGAGGCGCAAGTTCAGGAAGAGCCTCTCCTACGCGGGGGAGCTGTCGCCGCGC
TCGCCTCATTCTATGCCAAGAAGGTTGAGGCTGGACTCAAGAAGTACAAACCAGATATTA
TAATTAGTGTCCACCCCCTCATGCAACACATTCCTCTATGGGTACTCAAATGGCAAGGGC
TACAAAATAGAGTGGTCTTTGTCACTGTCATCACAGACCTCAACACTTGTCACCCTACAT
GGTTCCATGCTGATGTCAATAGATGTTACTGCCCATCGGAAGAAGTTGCCAAGAGAGCAG
CACTGGATGACCTACAACCTTCTCAAATCCGTGTGTTTGGCCTTCCGATTCGGCCATCAT
TCTGCCGAGCCGTTCTTGTTAAGGATGATTTGAGGAAGGAACTTGAATTGGATCCTGAGC
TGCCTGCAGTATTGCTGATGGGAGGTGGAGAGGGCATGGGTCCTGTCAAGAAGACCGCAA
AAGCCCTTGGAGAGTCGTTGTTTGACAAGGAGCTTGGAAAACCAATTGGACAGTTAATTG
TCATTTGTGGTCGGAACAAAACGCTGAGCTCCTCATTGCAGGCTCTTGAATGGAAAATAC
CAATTAAGGTTAGGGGATTTGAGACCCAGATGGAGAAATGGATGGGGGCTTGTGATTGCA
TTATAACAAAGGCTGGACCAGGTACCATCGCCGAAGCCTTGATTAGAGGGTTGCCTATCA
TCCTTAATGACTTCATACCTGGACAGGAAGTTGGCAATGTCCCTTATGTTGTGGACAATG
GTGCTGGTGTCTTCTCCAAAAGTTCTAGGGAAACTGCTAAACTTGTTGCCCGCTGGTTTG
GTCCAGATTCTGATGAACTGAAGAGGATGTCAGAAAAAGCGTTAAAACTGGCTCAGCCAG
AAGCGGTGTTTGATATTGTCAGAGACATCCATGAGCTATCTCGGGAGCAAGGGGTGATTT
CACAGATATCCAGTTCCTTGACATCATCCTTTTTCATACCATCGCCAGAAACCACACCTA
TACAACTTATGTGAAAAATCCGTGTATAGCTAGAACTGCATTCTTTGACCTCGTGAAATT
TGCCTTTGTCCTACAATGTCCTGAAAAAGAAAAATATGTCAATGGATTTAGCTGGTTTGT
TTCATCTGTCTCACGGCGTTGGGATGAGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGT
GGTCTCTCATGGTAGTTATGGGCTTGTTTGACTGACAGCTGCTCTTGTGTAATATCCATA
TTCGGTTTTTGTTAAAATCATTCGTTCATATGATTTTTTTTAAAAAATCCTGTCGTCCTT
TGTTCAGAGGGACCAGCGATGGGCTGCAAATTGTACACTGTTAGTTGATGTTGGAAAGTT
TAAACCTCTCGACTTGTAACATATCCATTCATGTAAGATCCATCGTGACTGTAAAGTGTA
TGAGACAATGACAAATTGTGCTAGTGAGAGAGTCATGTGCTTGTTGAAAAAA

consensusID : consensus_9920#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1652
fasta sequence

                              [TTTTTTTTTTTTTTGCTGCTGTCGTCTCGTGTGAAATCGGCATGGTAGCGTAGGCTGGAATCTGGCCATTGGGAACACAAGGGTTTTGATTTGTTGTGCTCGGGATTGGCGTTGTGGCAGGTCTTCGTCAAGGATCTGTGCAAGGATCACGCGGGGTGGCCGCTGAACAACATGGAGAGCTCGTACAAGTTCATGGTGAAGCATGTGCAGCTATGGAAGGTGGCCTTCCACACCACATCGCCGAGATGGGTCCATTGCTTCTACCTCGCCGCGCTCGCCTCATTCTATGCCAAGAAGGTTGAGGCTGGACTCAAGAAGTACAAACCAGATATTATAATTAGTGTCCACCCCCTCATGCAACACATTCCTCTATGGGTACTCAAATGGCAAGGGCTACAAAATAGAGTGGTCTTTGTCACTGTCATCACAGACCTCAACACTTGTCACCCTACATGGTTCCATGCTGATGTCAATAGATGTTACTGCCCATCGGAAGAAGTTGCCAAGAGAGCAGCACTGGATGACCTACAACCTTCTCAAATCCGTGTGTTTGGCCTTCCGATTCGTCCATCATTCTGCCGAGCCGTTCTTGTTAAGGATGATTTGAGGAAGGAACTTGAATTGGATCCTGAGCTGCCTGCAGTATTGCTGATGGGAGGTGGAGAGGGCATGGGTCCTGTCAAGAAGACCGCAAAAGCCCTTGGAGAGTCGTTGTTTGACGAGGAGCTTGGAAAACCAATTGGACAGTTAATTGTCATTTGTGGTCGGAACAAAACGCTGAGCTCCTCATTGCAGGCTCTTGAATGGAAAATACCAATTAAGGTTAGGGGATTTGAGACCCAGATGGAGAAATGGATGGGGGCTTGTGATTGCATTATAACAAAGGCTGGACCAGGTACCATCGCCGAAGCCTTGATTAGAGGGTTGCCTATCATCCTTAATGACTTCATACCTGGACAGGAAGTTGGCAATGTCCCTTATGTTGTGGACAATGGTGCTGGTGTCTTCTCCAAAAGTTCTAGGGAAACTGCTAAACTTGTTGCCCGCTGGTTTGGTCCAGATTCTGATGAACTGAAGAGGATGTCAGAAAAAGCGTTAAAACTGGCTCAGCCAGAAGCGGTGTTTGATATTGTCAGAGACATCCATGAGCTATCTCGGGAGCAAGGGGTGATTTCACAGATATCCAGTTCCTTGACATCATCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTGTATAGCTAGAACTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAAAAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGATGAGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTCTCTCATGGTAGTTATGGGCTTGTTTGACTGACAGCTGCTCTTGTGTAATATCCATATTCGGTTTTTGTTAAAATCATTCGTTCATATGATTTTTTTAAAAAAATCCTGTCGTCCTTTGTTCAGAGGGACCAGCGATGGGCTGCAAATTGTACACTGTTAGTTGATGTTGGAAAGTTTAAACCTCTCGACTTGTAACATATCCATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AB112060             [TTTTTTTTTTTTTTGCTGCTGTCGTCTCGTGTGAAATCGGCATGGTAGCGTAGGCTGGAATCTGGCCATTGGGAACACAAGGGTTTTGATTTGTTGTGCTCGGGATTGGCGTTGTGGCAGGTCTTCGTCAAGGATCTGTGCAAGGATCACGCGGGGTGGCCGCTGAACAACATGGAGAGCTCGTACAAGTTCATGGTGAAGCATGTGCAGCTATGGAAGGTGGCCTTCCACACCACATCGCCGAGATGGGTCCATTGCTTCTACCTCGCCGCGCTCGCCTCATTCTATGCCAAGAAGGTTGAGGCTGGACTCAAGAAGTACAAACCAGATATTATAATTAGTGTCCACCCCCTCATGCAACACATTCCTCTATGGGTACTCAAATGGCAAGGGCTACAAAATAGAGTGGTCTTTGTCACTGTCATCACAGACCTCAACACTTGTCACCCTACATGGTTCCATGCTGATGTCAATAGATGTTACTGCCCATCGGAAGAAGTTGCCAAGAGAGCAGCACTGGATGACCTACAACCTTCTCAAATCCGTGTGTTTGGCCTTCCGATTCGTCCATCATTCTGCCGAGCCGTTCTTGTTAAGGATGATTTGAGGAAGGAACTTGAATTGGATCCTGAGCTGCCTGCAGTATTGCTGATGGGAGGTGGAGAGGGCATGGGTCCTGTCAAGAAGACCGCAAAAGCCCTTGGAGAGTCGTTGTTTGACGAGGAGCTTGGAAAACCAATTGGACAGTTAATTGTCATTTGTGGTCGGAACAAAACGCTGAGCTCCTCATTGCAGGCTCTTGAATGGAAAATACCAATTAAGGTTAGGGGATTTGAGACCCAGATGGAGAAATGGATGGGGGCTTGTGATTGCATTATAACAAAGGCTGGACCAGGTACCATCGCCGAAGCCTTGATTAGAGGGTTGCCTATCATCCTTAATGACTTCATACCTGGACAGGAAGTTGGCAATGTCCCTTATGTTGTGGACAATGGTGCTGGTGTCTTCTCCAAAAGTTCTAGGGAAACTGCTAAACTTGTTGCCCGCTGGTTTGGTCCAGATTCTGATGAACTGAAGAGGATGTCAGAAAAAGCGTTAAAACTGGCTCAGCCAGAAGCGGTGTTTGATATTGTCAGAGACATCCATGAGCTATCTCGGGAGCAAGGGGTGATTTCACAGATATCCAGTTCCTTGACATCATCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTGTATAGCTAGAACTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAAAAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGATGAGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTCTCTCATGGTAGTTATGGGCTTGTTTGACTGACAGCTGCTCTTGTGTAATATCCATATTCGGTTTTTGTTAAAATCATTCGTTCATATGATTTTTTTAAAAAAATCCTGTCGTCCTTTGTTCAGAGGGACCAGCGATGGGCTGCAAATTGTACACTGTTAGTTGATGTTGGAAAGTTTAAACCTCTCGACTTGTAACATATCCATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9920#1
TTTTTTTTTTTTTTGCTGCTGTCGTCTCGTGTGAAATCGGCATGGTAGCGTAGGCTGGAA
TCTGGCCATTGGGAACACAAGGGTTTTGATTTGTTGTGCTCGGGATTGGCGTTGTGGCAG
GTCTTCGTCAAGGATCTGTGCAAGGATCACGCGGGGTGGCCGCTGAACAACATGGAGAGC
TCGTACAAGTTCATGGTGAAGCATGTGCAGCTATGGAAGGTGGCCTTCCACACCACATCG
CCGAGATGGGTCCATTGCTTCTACCTCGCCGCGCTCGCCTCATTCTATGCCAAGAAGGTT
GAGGCTGGACTCAAGAAGTACAAACCAGATATTATAATTAGTGTCCACCCCCTCATGCAA
CACATTCCTCTATGGGTACTCAAATGGCAAGGGCTACAAAATAGAGTGGTCTTTGTCACT
GTCATCACAGACCTCAACACTTGTCACCCTACATGGTTCCATGCTGATGTCAATAGATGT
TACTGCCCATCGGAAGAAGTTGCCAAGAGAGCAGCACTGGATGACCTACAACCTTCTCAA
ATCCGTGTGTTTGGCCTTCCGATTCGTCCATCATTCTGCCGAGCCGTTCTTGTTAAGGAT
GATTTGAGGAAGGAACTTGAATTGGATCCTGAGCTGCCTGCAGTATTGCTGATGGGAGGT
GGAGAGGGCATGGGTCCTGTCAAGAAGACCGCAAAAGCCCTTGGAGAGTCGTTGTTTGAC
GAGGAGCTTGGAAAACCAATTGGACAGTTAATTGTCATTTGTGGTCGGAACAAAACGCTG
AGCTCCTCATTGCAGGCTCTTGAATGGAAAATACCAATTAAGGTTAGGGGATTTGAGACC
CAGATGGAGAAATGGATGGGGGCTTGTGATTGCATTATAACAAAGGCTGGACCAGGTACC
ATCGCCGAAGCCTTGATTAGAGGGTTGCCTATCATCCTTAATGACTTCATACCTGGACAG
GAAGTTGGCAATGTCCCTTATGTTGTGGACAATGGTGCTGGTGTCTTCTCCAAAAGTTCT
AGGGAAACTGCTAAACTTGTTGCCCGCTGGTTTGGTCCAGATTCTGATGAACTGAAGAGG
ATGTCAGAAAAAGCGTTAAAACTGGCTCAGCCAGAAGCGGTGTTTGATATTGTCAGAGAC
ATCCATGAGCTATCTCGGGAGCAAGGGGTGATTTCACAGATATCCAGTTCCTTGACATCA
TCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTGTA
TAGCTAGAACTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAA
AAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGATG
AGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTCTCTCATGGTAGTTATGGGCTTG
TTTGACTGACAGCTGCTCTTGTGTAATATCCATATTCGGTTTTTGTTAAAATCATTCGTT
CATATGATTTTTTTAAAAAAATCCTGTCGTCCTTTGTTCAGAGGGACCAGCGATGGGCTG
CAAATTGTACACTGTTAGTTGATGTTGGAAAGTTTAAACCTCTCGACTTGTAACATATCC
ATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9920#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 801
fasta sequence

                              [CTGACATGGACTGAGGAGTAGAAAGGTTGCCTATCATCCTTAATGACTTCATACCTGGACAGGAAGTTGGCAATGTCCCTTATGTTGTGGACAATGGTGCTGGTGTCTTCTCCAAAAGTTCTAGGGAAACTGCTAAACTTGTTGCCCGCTGGTTTGGTCCAGATTCTGATGAACTGAAGAGGATGTCAGAAAAAGCGTTAAAACTGGCTCAGCCAGAAGCGGTGTTTGATATTGTCAGAGACATCCATGAGCTATCTCGGGAGCAAGGGGTGATTTCACAGATATCCAGTTCCTTGACATCATCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTGTATAGCTAGAACTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAAAAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGATGAGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTCTCTCATGGTAGTTATGGGCTTGTTTGATTGACAGCTGCTCTTGTGTAATATCCATATTCGGTTTTTGTTAAAATCATTCGTTCATATGATTTTTTTAAAAAAAATCCTGTCGTCCTTTGTTCAGAGGGACCAGCGATGGGCTGCAAATTGTACACTGTTAGTTGATGTTGGAAAGTTTAAACCTCTCGACTTGTAACATATCCATTCATGTAAGATCCATCGTGACTGTAAAGTGTATGAGACAATGACAAATTGTGCTAGTGAGAGTCAAAAAAAAAAAA]

[+] EMBL CF307640             [CTGACATGGACTGAGGAGTAGAAAGGTTGCCTATCATCCTTAATGACTTCATACCTGGACAGGAAGTTGGCAATGTCCCTTATGTTGTGGACAATGGTGCTGGTGTCTTCTCCAAAAGTTCTAGGGAAACTGCTAAACTTGTTGCCCGCTGGTTTGGTCCAGATTCTGATGAACTGAAGAGGATGTCAGAAAAAGCGTTAAAACTGGCTCAGCCAGAAGCGGTGTTTGATATTGTCAGAGACATCCATGAGCTATCTCGGGAGCAAGGGGTGATTTCACAGATATCCAGTTCCTTGACATCATCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTGTATAGCTAGAACTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACA                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CA760861             [                                                                                                                                                                                                                                                            agggaCGAGA CAAGGGGTGATTTCACAGATATCCAGTTCCTTGACATCATCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACATATGTGAAAAATCCGTGTATAGCTAGAACTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAAAAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGATGAGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTCTCTCATGGTAGTTATGGGCTTGTTTGATTGACAGCTGCTCTTGTGTAATATCCATATTCGGTTTTTGTTAAAATCATTCGTTCATATGATTTTTTTAAAAAAAATCCTGTCGTCCTTTGTTCAGAGGGACCAGCGATGGGCTGCAAATTGTACACTGTTAGTTGATGTTGGAAAGTTTAAACCTCTCGACTTGTAACATATCCATTCATGTAAGATCCATCGTGACTGTAAAGTGTATGAGACAATGACAAATTGTGCTAGTGAGAGTCAAAAAAAAAAAA]




>consensus_9920#2
CTGACATGGACTGAGGAGTAGAAAGGTTGCCTATCATCCTTAATGACTTCATACCTGGAC
AGGAAGTTGGCAATGTCCCTTATGTTGTGGACAATGGTGCTGGTGTCTTCTCCAAAAGTT
CTAGGGAAACTGCTAAACTTGTTGCCCGCTGGTTTGGTCCAGATTCTGATGAACTGAAGA
GGATGTCAGAAAAAGCGTTAAAACTGGCTCAGCCAGAAGCGGTGTTTGATATTGTCAGAG
ACATCCATGAGCTATCTCGGGAGCAAGGGGTGATTTCACAGATATCCAGTTCCTTGACAT
CATCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTG
TATAGCTAGAACTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGA
AAAAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGA
TGAGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTCTCTCATGGTAGTTATGGGCT
TGTTTGATTGACAGCTGCTCTTGTGTAATATCCATATTCGGTTTTTGTTAAAATCATTCG
TTCATATGATTTTTTTAAAAAAAATCCTGTCGTCCTTTGTTCAGAGGGACCAGCGATGGG
CTGCAAATTGTACACTGTTAGTTGATGTTGGAAAGTTTAAACCTCTCGACTTGTAACATA
TCCATTCATGTAAGATCCATCGTGACTGTAAAGTGTATGAGACAATGACAAATTGTGCTA
GTGAGAGTCAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9920#0      --CCCCAATTTTAAACTCCCTTCTCTCTCTCTCTCGTCGTCGTCGT--CCACCGCCGCAA 56
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      TTTTTTTTTTTTTTGCTGCTGTCGTCTCGTGTGAAATCGGCATGGTAGCGTAGGCTGGAA 60
                                                                                  

consensus_9920#0      AGGGGTCTCGTCTCTCTCGGGGGCGATGGC--GGCGTCGTCGTCGTCGTCGTCGTCGATG 114
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      TCTGGCCATTGGGAACACAAGGGTTTTGATTTGTTGTGCTCGGGATTGGCGTTGTGGCAG 120
                                                                                  

consensus_9920#0      G-CGTCGCCGAGGGGGAGGTC---GATC-CGGGAGACGGT-GCTGGAGACGGTGGCGGCG 168
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      GTCTTCGTCAAGGATCTGTGCAAGGATCACGCGGGGTGGCCGCTGAACAACATGGAGAGC 180
                                                                                  

consensus_9920#0      TACCACCAGCA-GCAGAGGATGAGGCGCAAGTTCAGGAAGAGCCTCTCC----TACGCGG 223
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      TCGTACAAGTTCATGGTGAAGCATGTGCAGCTATGGAAGGTGGCCTTCCACACCACATCG 240
                                                                                  

consensus_9920#0      GGGAGCTG-----------------TCGCCGCGCTCGCCTCATTCTATGCCAAGAAGGTT 266
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      CCGAGATGGGTCCATTGCTTCTACCTCGCCGCGCTCGCCTCATTCTATGCCAAGAAGGTT 300
                                                                                  

consensus_9920#0      GAGGCTGGACTCAAGAAGTACAAACCAGATATTATAATTAGTGTCCACCCCCTCATGCAA 326
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      GAGGCTGGACTCAAGAAGTACAAACCAGATATTATAATTAGTGTCCACCCCCTCATGCAA 360
                                                                                  

consensus_9920#0      CACATTCCTCTATGGGTACTCAAATGGCAAGGGCTACAAAATAGAGTGGTCTTTGTCACT 386
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      CACATTCCTCTATGGGTACTCAAATGGCAAGGGCTACAAAATAGAGTGGTCTTTGTCACT 420
                                                                                  

consensus_9920#0      GTCATCACAGACCTCAACACTTGTCACCCTACATGGTTCCATGCTGATGTCAATAGATGT 446
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      GTCATCACAGACCTCAACACTTGTCACCCTACATGGTTCCATGCTGATGTCAATAGATGT 480
                                                                                  

consensus_9920#0      TACTGCCCATCGGAAGAAGTTGCCAAGAGAGCAGCACTGGATGACCTACAACCTTCTCAA 506
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      TACTGCCCATCGGAAGAAGTTGCCAAGAGAGCAGCACTGGATGACCTACAACCTTCTCAA 540
                                                                                  

consensus_9920#0      ATCCGTGTGTTTGGCCTTCCGATTCGGCCATCATTCTGCCGAGCCGTTCTTGTTAAGGAT 566
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      ATCCGTGTGTTTGGCCTTCCGATTCGTCCATCATTCTGCCGAGCCGTTCTTGTTAAGGAT 600
                                                                                  

consensus_9920#0      GATTTGAGGAAGGAACTTGAATTGGATCCTGAGCTGCCTGCAGTATTGCTGATGGGAGGT 626
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      GATTTGAGGAAGGAACTTGAATTGGATCCTGAGCTGCCTGCAGTATTGCTGATGGGAGGT 660
                                                                                  

consensus_9920#0      GGAGAGGGCATGGGTCCTGTCAAGAAGACCGCAAAAGCCCTTGGAGAGTCGTTGTTTGAC 686
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      GGAGAGGGCATGGGTCCTGTCAAGAAGACCGCAAAAGCCCTTGGAGAGTCGTTGTTTGAC 720
                                                                                  

consensus_9920#0      AAGGAGCTTGGAAAACCAATTGGACAGTTAATTGTCATTTGTGGTCGGAACAAAACGCTG 746
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      GAGGAGCTTGGAAAACCAATTGGACAGTTAATTGTCATTTGTGGTCGGAACAAAACGCTG 780
                                                                                  

consensus_9920#0      AGCTCCTCATTGCAGGCTCTTGAATGGAAAATACCAATTAAGGTTAGGGGATTTGAGACC 806
consensus_9920#2      ------------------------------------------------------------
consensus_9920#1      AGCTCCTCATTGCAGGCTCTTGAATGGAAAATACCAATTAAGGTTAGGGGATTTGAGACC 840
                                                                                  

consensus_9920#0      CAGATGGAGAAATGGATGGGGGCTTGTGATTGCATTATAACAAAGGCTGGACCAGGTACC 866
consensus_9920#2      -------------------------------------------------------CTGAC 5
consensus_9920#1      CAGATGGAGAAATGGATGGGGGCTTGTGATTGCATTATAACAAAGGCTGGACCAGGTACC 900
                                                                              *  *

consensus_9920#0      ATCGCCGAAGCCTTGATTAGAGGGTTGCCTATCATCCTTAATGACTTCATACCTGGACAG 926
consensus_9920#2      ATGGACTGAGG---AGTAGAAAGGTTGCCTATCATCCTTAATGACTTCATACCTGGACAG 62
consensus_9920#1      ATCGCCGAAGCCTTGATTAGAGGGTTGCCTATCATCCTTAATGACTTCATACCTGGACAG 960
                      ** * *  **      *   * **************************************

consensus_9920#0      GAAGTTGGCAATGTCCCTTATGTTGTGGACAATGGTGCTGGTGTCTTCTCCAAAAGTTCT 986
consensus_9920#2      GAAGTTGGCAATGTCCCTTATGTTGTGGACAATGGTGCTGGTGTCTTCTCCAAAAGTTCT 122
consensus_9920#1      GAAGTTGGCAATGTCCCTTATGTTGTGGACAATGGTGCTGGTGTCTTCTCCAAAAGTTCT 1020
                      ************************************************************

consensus_9920#0      AGGGAAACTGCTAAACTTGTTGCCCGCTGGTTTGGTCCAGATTCTGATGAACTGAAGAGG 1046
consensus_9920#2      AGGGAAACTGCTAAACTTGTTGCCCGCTGGTTTGGTCCAGATTCTGATGAACTGAAGAGG 182
consensus_9920#1      AGGGAAACTGCTAAACTTGTTGCCCGCTGGTTTGGTCCAGATTCTGATGAACTGAAGAGG 1080
                      ************************************************************

consensus_9920#0      ATGTCAGAAAAAGCGTTAAAACTGGCTCAGCCAGAAGCGGTGTTTGATATTGTCAGAGAC 1106
consensus_9920#2      ATGTCAGAAAAAGCGTTAAAACTGGCTCAGCCAGAAGCGGTGTTTGATATTGTCAGAGAC 242
consensus_9920#1      ATGTCAGAAAAAGCGTTAAAACTGGCTCAGCCAGAAGCGGTGTTTGATATTGTCAGAGAC 1140
                      ************************************************************

consensus_9920#0      ATCCATGAGCTATCTCGGGAGCAAGGGGTGATTTCACAGATATCCAGTTCCTTGACATCA 1166
consensus_9920#2      ATCCATGAGCTATCTCGGGAGCAAGGGGTGATTTCACAGATATCCAGTTCCTTGACATCA 302
consensus_9920#1      ATCCATGAGCTATCTCGGGAGCAAGGGGTGATTTCACAGATATCCAGTTCCTTGACATCA 1200
                      ************************************************************

consensus_9920#0      TCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTGTA 1226
consensus_9920#2      TCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTGTA 362
consensus_9920#1      TCCTTTTTCATACCATCGCCAGAAACCACACCTATACAACTTATGTGAAAAATCCGTGTA 1260
                      ************************************************************

consensus_9920#0      TAGCTAGAACTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAA 1286
consensus_9920#2      TAGCTAGAACTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAA 422
consensus_9920#1      TAGCTAGAACTGCATTCTTTGACCTCGTGAAATTTGCCTTTGTCCTACAATGTCCTGAAA 1320
                      ************************************************************

consensus_9920#0      AAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGATG 1346
consensus_9920#2      AAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGATG 482
consensus_9920#1      AAGAAAAATATGTCAATGGATTTAGCTGGTTTGTTTCATCTGTCTCACGGCGTTGGGATG 1380
                      ************************************************************

consensus_9920#0      AGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTCTCTCATGGTAGTTATGGGCTTG 1406
consensus_9920#2      AGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTCTCTCATGGTAGTTATGGGCTTG 542
consensus_9920#1      AGGTAAGCAGGATTTCGACTGCTTTTCAGTTTGTGGTCTCTCATGGTAGTTATGGGCTTG 1440
                      ************************************************************

consensus_9920#0      TTTGACTGACAGCTGCTCTTGTGTAATATCCATATTCGGTTTTTGTTAAAATCATTCGTT 1466
consensus_9920#2      TTTGATTGACAGCTGCTCTTGTGTAATATCCATATTCGGTTTTTGTTAAAATCATTCGTT 602
consensus_9920#1      TTTGACTGACAGCTGCTCTTGTGTAATATCCATATTCGGTTTTTGTTAAAATCATTCGTT 1500
                      ***** ******************************************************

consensus_9920#0      CATATGATTTTTTTTAAAAAA-TCCTGTCGTCCTTTGTTCAGAGGGACCAGCGATGGGCT 1525
consensus_9920#2      CATATGATTTTTTTAAAAAAAATCCTGTCGTCCTTTGTTCAGAGGGACCAGCGATGGGCT 662
consensus_9920#1      CATATGATTTTTTTAAAAAAA-TCCTGTCGTCCTTTGTTCAGAGGGACCAGCGATGGGCT 1559
                      ************** ****** **************************************

consensus_9920#0      GCAAATTGTACACTGTTAGTTGATGTTGGAAAGTTTAAACCTCTCGACTTGTAACATATC 1585
consensus_9920#2      GCAAATTGTACACTGTTAGTTGATGTTGGAAAGTTTAAACCTCTCGACTTGTAACATATC 722
consensus_9920#1      GCAAATTGTACACTGTTAGTTGATGTTGGAAAGTTTAAACCTCTCGACTTGTAACATATC 1619
                      ************************************************************

consensus_9920#0      CATTCATGTAAGATCCATCGTGACTGTAAAGTGTATGAGACAATGACAAATTGTGCTAGT 1645
consensus_9920#2      CATTCATGTAAGATCCATCGTGACTGTAAAGTGTATGAGACAATGACAAATTGTGCTAGT 782
consensus_9920#1      CATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------- 1652
                      ******   ** *   *     *    ***                              

consensus_9920#0      GAGAGAGTCATGTGCTTGTTGAAAAAA 1672
consensus_9920#2      GAGA--GTCAAAAA------AAAAAAA 801
consensus_9920#1      ---------------------------