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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 579 fasta sequence
[CACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCC-GCCTCCGCCGCC-GACGACGACATGGA-CGACGACG-CCATCA-CGGCGCTGATGGACATCGACGACTCCCCCCGCA-GCAGC-GGCGCCGGC-GCCGTC-TTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCC-CGGCCACCGCGCGGC-CC-GCGCCAACGAGGCC-CGC-GGGCC-CC-TCCCC-TTC-G-CCGGCTTCTAC-AACTCCTTC-GACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCT-TTTCATGTATCTCGAGACGTCGTGAGATCAATC-TGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCT]
[+] EMBL CF339980 [CACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCC GCCTCCGCCGCC GACGACGACATGGA CGACGACG CCATCA CGGCGCTGATGGACATCGACGACTCCCCCCGCA GCAGC GGCGCCGGC GCCGTC TTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCC CGGCCACCGCGCGGC CC GCGCCAACGAGGCC CGC GGGCC CC TCCCC TTC G CCGGCTTCTAC AACTCCTTC GACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCT TTTCATGTATCTCGAGACGTCGTGAGATCAATC TGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCT]
[+] EMBL AK109256 [ ACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCC GCCTCCGCCGCC GACGACGACATGAA CGACGACG CCATCA CGGCGCTGATGGACATCGACGACTCCCCCCGCA GCAGC GGCGCCGGC GCCGTC TTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCC CGGCCACCGCGCGGC CC GCGCCAACGAGGCC CGC GGGCC CC TCCCC TTC G CCGGCTTCTAC AACTCCTTC GACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCT TTTCATGTATCTCGAGACGTCGTGAGATCAATC TGGG ]
[+] EMBL BI797927 [ ATCCCGCCTGCCTCCGCCGCCTGACGACGACATGGATCGACGACGTCCATCATCGGCGCTGATGGACATCGACGACTCCCCCCGCATACAGCAGGCGCCGGCAGCCGTCGTTCCTCGACGACGAGGAGGACCCGGAGGTCTTCCCACGGCCACCGCGCGGCACCAGCGCCAACGAGGCCACGCAGGGCCACCATCCCCATTCAGCCCGACTTCTACAAACTCCTTCTGACGGCGCCGACTTCGACGACCCCGACCTCCCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTGGATTTCTCTTTCATGTATCTCGAGACGTCGTGAGATCCATC TGGGTACCTTTT CTGCCGAaaaaaaaaa ]
[+] EMBL AU163913 [ ACGACGACATGGA CGACGACG CCATCA CGGCGCTGATGGACATCGACGACTCCCCCCGCA GCAGC GGCGCCGGC GCCGTC TTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCC CGGCCACCGCGCGGC CC G GTCAACGAGGCC CGC GGG C CC TCCCC TTC G CCGGCTTCTAC AACTCCTTC GACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCT TTTCATGTATCTCGAGACGTCGTGAGATCAATCTTGGGTACCTTTTGCTGCCGATGTTTTTGAAaaaaa ]
consensusID : consensus_9921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence
[ACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTCTACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCAAAAAAAAAA]
[+] EMBL CA753644 [ACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTCTACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCAAAAAAAAAA]
consensusID : consensus_9921#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence
[CAAGGCACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCGCCTCCGNCGCCGACGACGACATGGACGACGACGNCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCGGCGNCGNCGCGTCTTCCTCGACGACGAGGAGGACGNGNAGGTCTTNCCCGGNCANCGCGCGGNCCGCGCAACGAGGNCCGCGGGCANCTTACNCTTNGNCGGCTTCTACAANTNCTTCGACGGCGNCGACTTTGACGGCANCGAANCTCGNC]
[+] EMBL OSC16062 [CAAGGCACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCGCCTCCGNCGCCGACGACGACATGGACGACGACGNCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCGGCGNCGNCGCGTCTTCCTCGACGACGAGGAGGACGNGNAGGTCTTNCCCGGNCANCGCGCGGNCCGCGCAACGAGGNCCGCGGGCANCTTACNCTTNGNCGGCTTCTACAANTNCTTCGACGGCGNCGACTTTGACGGCANCGAANCTCGNC]
consensusID : consensus_9921#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence
[GGAGTCGACCCACGCGTCCGGCCGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCTCTTGATTGGTACCAATCTCTGCGAGGTTTTCTTAAATTCTCGTAGTACTTTGATTCACAAGATAGATTTTTGTTTATAAAAAA]
[+] EMBL AU101299 [GGAGTCGACCCACGCGTCCGGCCGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCTCTTGATTGGTACCAATCTCTGCGAGGTTTTCTTAAATTCTCGTAGTACTTTGATTCACAAGATAGATTTTTGTTTATAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9921#1 ------------------------------------------------------------
consensus_9921#3 ------------------------------------------------------------
consensus_9921#0 CACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCC 60
consensus_9921#2 ------------------------------------------------------------
consensus_9921#1 ------------------------------------------------------------
consensus_9921#3 ------------------------------------------------------------
consensus_9921#0 GCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCGCCTCC 120
consensus_9921#2 ------------------------------------------------------------
consensus_9921#1 -------------ACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCC 47
consensus_9921#3 ------------------------------------------------------------
consensus_9921#0 GCCGCCGACGACGACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCC 180
consensus_9921#2 ------------------------------------------------------------
consensus_9921#1 CCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTC 107
consensus_9921#3 ------------------------------------------------------------
consensus_9921#0 CCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTC 240
consensus_9921#2 ------------------------------------------------------------
consensus_9921#1 CCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTC 167
consensus_9921#3 ------------------------------------------------------------
consensus_9921#0 CCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTC 300
consensus_9921#2 ------------------------------------------------------------
consensus_9921#1 TACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGT 227
consensus_9921#3 ------------------------------------------------GGAGTCGAC--C 10
consensus_9921#0 TACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGT 360
consensus_9921#2 CAAGGCACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCC 60
* *
consensus_9921#1 AACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTG 287
consensus_9921#3 CACGCGTCCGGCC--GTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTG 68
consensus_9921#0 AACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTG 420
consensus_9921#2 ACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCG 120
* * * * ** * * * ** * ** ** * *
consensus_9921#1 TCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGT-ATCT 346
consensus_9921#3 TCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGT-ATCT 127
consensus_9921#0 TCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGT-ATCT 479
consensus_9921#2 CCTCCGNCGCCGACGACGACATGGACGACGACGNCATCACGGCGCTGATGGACATCGACG 180
*** * ** * ** * * * * * *
consensus_9921#1 CGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCT-GCCGATGTTTTTGAATCAAAAAA 405
consensus_9921#3 CGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCT-GCCGATGTTTTTGAATCTCTATG 186
consensus_9921#0 CGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCT-GCCGATGTTTTTGAATCTCTATG 538
consensus_9921#2 ACTCCCCCCGCAGCAGCGGCGNCGNCGCGTCTTCCTCGACGACGAGGA-GGACGNGNAGG 239
* ** * * * * * ** ** * *** * * * *
consensus_9921#1 AAAA-------------------------------------------------------- 409
consensus_9921#3 CCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCTCTTGATTGGTACCAATCTC 246
consensus_9921#0 CCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCT------------------- 579
consensus_9921#2 TCTTNCCCGGNC-----ANCGCGCGGNCCGCGCAACGAGGNCC-GCGGGCANCTTACNCT 293
consensus_9921#1 ------------------------------------------------------------
consensus_9921#3 TGCGAGGTTTTCTTAAATTCTCGTAGTACTTTGA--TTCACAAGATAGATTTTTGTTTAT 304
consensus_9921#0 ------------------------------------------------------------
consensus_9921#2 TNGNCGGCTTCTACAANTNCTTCGACGGCGNCGACTTTGACGGCANCGAANCTCGNC--- 350
consensus_9921#1 ------
consensus_9921#3 AAAAAA 310
consensus_9921#0 ------
consensus_9921#2 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||