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Oryza sativa
cluster # 9924 cluster # 9924       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9924#0 length = 1712 sequences # 2  
consensus_9924#1 length = 1300 sequences # 4  
consensus_9924#2 length = 187 sequences # 1  

consensusID : consensus_9924#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1712
fasta sequence
                              [AGTCGAGAGAACCCTGCGCCGTCGCCGACGATGGGGCTCGCCGGCGGGGCGCGCGTGGTGCTCTTCGTCGTGGCGGCGGCGGCGGCTGCGGCTCTGACTGCCGCCGCCGATCAGATCTTCACCAGTTCAGGTGCGCCGTTTGGGCGGAATTCGCGTGAGCCGAGGTACCATGTTGAGTTCCATCCTGTCGATGCGCCATTTAATCCAGAGAATGGCCAGGAATCTGTACCAATGACTAGCCACGTGGGGAAACATTATACATGCTTCCTACCTGTTGAGGAAACAAAAACCATGAAGTCGATAATCCCACAAAACGCAACCAATGTTATCATAGAAAGTGAACGGAGAGTTAAGCCAAAGGATCCAGATGAATTGCTGGAAATTCTCAAGGATCAGTGCTTCTACAGGCATGAAGGTTGGTGGTCTTATGAATTTTGCTACTACGGGAAAATCCGACAAGTCCACGTAGAGGGCGAGAAGGTAAGCTGCCCCATCCTGTTTATTTTCTTTGCTCAGATCAGTCATTGTATTTTATCCTCTTTATGCACTATCTAAAAAATATCTGAGATGCGTCAATCCAAGAGTTGCTAGTTTTTACAGGAGAGACAAGTTCTGGCCACAGTTACACACTACATTATGAAAAATAAAATATTTTATCTTTGACAATAAATGCAGCCGACAGTTTCTAGAGCACTTGAATTGCCACGTAAAGTTTGTGTTGTTTGCAGGTTATTCAAGAATATGTTCTGGGTGAATATGATGCTGATGCAACTGATGCTTACTATGAAAATCAAACATCTGACTCTGCTGATGAAGGTGATAACCTGATAGACACCTCTAAGAGGTATCATGTCCACCTGTACACAAATGGGACTGTCTGCGATCTCACTGATATGCCCCGGGAAACAGAGGTTAGATTTGTATGTTCAGAACCCACTGTAGTGATTAGTTCAATTAAGGAGATCTCTTCCTGCAAATATGTTTTAACAGTTCAAAGCCCAATGCTTTGCAAGAATCCGCTATTTCAGCAAGAAAAACGTACCCTCTCCATTCACTGCAACGAGTTGCTAGCTGAAGCTGAAGCCACTGTGGATGATGACTCTCTTCCAAAAGAAGCTCAGATCATCATCCCAGATCCAGATGGATTGCATAATTATGCAGCTTATGCTACTTGATTATGCATCATTGTTATAGCATCAGACAGTGAAGAAAATCATCTTCCGGGTGCAACGGCAATTTGGCGATGCTAACAATGGTATAGGTTGTTCGCGGAGCATATTATCCATTCATGTGAAGCAGGTTTGAGATCATCAGACTAACATTGATCATGAGGAACATTACGGGCGATGAGTGCTTCTGTACTAGTGCAAACGAAGTACTAAATTTCAGTGTCAAACTGTAGACAGTAACATTTTCTTGATATATGTTTATAGAAGAAAATCTTGTGATGCGGAAAAGTGCATGTGCAAACATCGTTTCATTGCGAGATTATGGTATTGCTCTGAAGTGAAGAAATATCATGTGCATTGAGAGCAAAGGTGTTCCCTTTTTTCTTGAGTGCAGATGACGGCAAGTCGGCAACACAAGACAGGGGATTTGCTTAATGTAAGATGTTCATACTAAGTCAAGGGATTTGCTTTAATGTTAAGTTGTCACACTAAGCCAAAAAGCATGTACTCCAATTTCAATGCTATGATAAAGAGCAAATTTGC]

[+] EMBL AK105643             [AGTCGAGAGAACCCTGCGCCGTCGCCGACGATGGGGCTCGCCGGCGGGGCGCGCGTGGTGCTCTTCGTCGTGGCGGCGGCGGCGGCTGCGGCTCTGACTGCCGCCGCCGATCAGATCTTCACCAGTTCAGGTGCGCCGTTTGGGCGGAATTCGCGTGAGCCGAGGTACCATGTTGAGTTCCATCCTGTCGATGCGCCATTTAATCCAGAGAATGGCCAGGAATCTGTACCAATGACTAGCCACGTGGGGAAACATTATACATGCTTCCTACCTGTTGAGGAAACAAAAACCATGAAGTCGATAATCCCACAAAACGCAACCAATGTTATCATAGAAAGTGAACGGAGAGTTAAGCCAAAGGATCCAGATGAATTGCTGGAAATTCTCAAGGATCAGTGCTTCTACAGGCATGAAGGTTGGTGGTCTTATGAATTTTGCTACTACGGGAAAATCCGACAAGTCCACGTAGAGGGCGAGAAGGTAAGCTGCCCCATCCTGTTTATTTTCTTTGCTCAGATCAGTCATTGTATTTTATCCTCTTTATGCACTATCTAAAAAATATCTGAGATGCGTCAATCCAAGAGTTGCTAGTTTTTACAGGAGAGACAAGTTCTGGCCACAGTTACACACTACATTATGAAAAATAAAATATTTTATCTTTGACAATAAATGCAGCCGACAGTTTCTAGAGCACTTGAATTGCCACGTAAAGTTTGTGTTGTTTGCAGGTTATTCAAGAATATGTTCTGGGTGAATATGATGCTGATGCAACTGATGCTTACTATGAAAATCAAACATCTGACTCTGCTGATGAAGGTGATAACCTGATAGACACCTCTAAGAGGTATCATGTCCACCTGTACACAAATGGGACTGTCTGCGATCTCACTGATATGCCCCGGGAAACAGAGGTTAGATTTGTATGTTCAGAACCCACTGTAGTGATTAGTTCAATTAAGGAGATCTCTTCCTGCAAATATGTTTTAACAGTTCAAAGCCCAATGCTTTGCAAGAATCCGCTATTTCAGCAAGAAAAACGTACCCTCTCCATTCACTGCAACGAGTTGCTAGCTGAAGCTGAAGCCACTGTGGATGATGACTCTCTTCCAAAAGAAGCTCAGATCATCATCCCAGATCCAGATGGATTGCATAATTATGCAGCTTATGCTACTTGATTATGCATCATTGTTATAGCATCAGACAGTGAAGAAAATCATCTTCCGGGTGCAACGGCAATTTGGCGATGCTAACAATGGTATAGGTTGTTCGCGGAGCATATTATCCATTCATGTGAAGCAGGTTTGAGATCATCAGACTAACATTGATCATGAGGAACATTACGGGCGATGAGTGCTTCTGTACTAGTGCAAACGAAGTACTAAATTTCAGTGTCAAACTGTAGACAGTAACATTTTCTTGATATATGTTTATAGAAGAAAATCTTGTGATGCGGAAAAGTGCATGTGCAAACATCGTTTCATTGCGAGATTATGGTATTGCTCTGAAGTGAAGAAATATCATGTGCATTGAGAGCAAAGGTGTTCCCTTTTTTCTTGAGTGCAGATGACGGCAAGTCGGCAACACAAGACAGGGGATTTGCTTAATGTAAGATGTTCATACTAAGTCAAGGGATTTGCTTTAATGTTAAGTTGTCACACTAAGCCAAAAAGCATGTACTCCAATTTCAATGCTATGATAAAGAGCAAATTTGC]
[-] EMBL CB652941             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAAACAGAGGTTAGATTTGTATGTTCACACCCCACTGTAGGGATTAGTTCAATTAAGGAGATCTCTTCCTGCAAATATGTTTTACCAGTTCAAAGCCCAATGCTTTGCAAGAATCCGTTATTTCAGCAAGAAAAAGGTACCCTTTCCATTCACTGCAAGGAGTTGTTAGCTGAAGCTGAACCCCCTGGGGATGATGACTTTTTTCCAAAAGAAGCTCAGATCATCATCCCAGATCCAGATGGATGGCATAATTATGCAGCTTATGCTACTTGATTATGCATCATTGTTATAGCATCAGACAGGGAAGAAAATCTTCTTCGGGGTGCAACGGCAATTTGGCAATGCTAACAATGGTATAGGTTGTTGGCGGAGCATATTATCCATTCATGTGAAGCAGGTTTGAGATCATCAGACTACCATTGATCATGAGGACCATTACGGGCGATGAGTGTTTCTGTATTAGTGCAAACGAAGTACTAAATTTCAGGGTCAAACTGTAGCCAGTACCATTTTCTTGATATATGTTTATAGAAGAAAATCTGGGGATGCGGAAAAGGGCATGTGCAAACATGGTTTCATTGCGAGATTATGGTATTGCTCTGAAGTGAAGAAAAAGGATGTCCATTGAGGGCCAAaa                                                                                                                                                                             ]


>consensus_9924#0 AGTCGAGAGAACCCTGCGCCGTCGCCGACGATGGGGCTCGCCGGCGGGGCGCGCGTGGTG CTCTTCGTCGTGGCGGCGGCGGCGGCTGCGGCTCTGACTGCCGCCGCCGATCAGATCTTC ACCAGTTCAGGTGCGCCGTTTGGGCGGAATTCGCGTGAGCCGAGGTACCATGTTGAGTTC CATCCTGTCGATGCGCCATTTAATCCAGAGAATGGCCAGGAATCTGTACCAATGACTAGC CACGTGGGGAAACATTATACATGCTTCCTACCTGTTGAGGAAACAAAAACCATGAAGTCG ATAATCCCACAAAACGCAACCAATGTTATCATAGAAAGTGAACGGAGAGTTAAGCCAAAG GATCCAGATGAATTGCTGGAAATTCTCAAGGATCAGTGCTTCTACAGGCATGAAGGTTGG TGGTCTTATGAATTTTGCTACTACGGGAAAATCCGACAAGTCCACGTAGAGGGCGAGAAG GTAAGCTGCCCCATCCTGTTTATTTTCTTTGCTCAGATCAGTCATTGTATTTTATCCTCT TTATGCACTATCTAAAAAATATCTGAGATGCGTCAATCCAAGAGTTGCTAGTTTTTACAG GAGAGACAAGTTCTGGCCACAGTTACACACTACATTATGAAAAATAAAATATTTTATCTT TGACAATAAATGCAGCCGACAGTTTCTAGAGCACTTGAATTGCCACGTAAAGTTTGTGTT GTTTGCAGGTTATTCAAGAATATGTTCTGGGTGAATATGATGCTGATGCAACTGATGCTT ACTATGAAAATCAAACATCTGACTCTGCTGATGAAGGTGATAACCTGATAGACACCTCTA AGAGGTATCATGTCCACCTGTACACAAATGGGACTGTCTGCGATCTCACTGATATGCCCC GGGAAACAGAGGTTAGATTTGTATGTTCAGAACCCACTGTAGTGATTAGTTCAATTAAGG AGATCTCTTCCTGCAAATATGTTTTAACAGTTCAAAGCCCAATGCTTTGCAAGAATCCGC TATTTCAGCAAGAAAAACGTACCCTCTCCATTCACTGCAACGAGTTGCTAGCTGAAGCTG AAGCCACTGTGGATGATGACTCTCTTCCAAAAGAAGCTCAGATCATCATCCCAGATCCAG ATGGATTGCATAATTATGCAGCTTATGCTACTTGATTATGCATCATTGTTATAGCATCAG ACAGTGAAGAAAATCATCTTCCGGGTGCAACGGCAATTTGGCGATGCTAACAATGGTATA GGTTGTTCGCGGAGCATATTATCCATTCATGTGAAGCAGGTTTGAGATCATCAGACTAAC ATTGATCATGAGGAACATTACGGGCGATGAGTGCTTCTGTACTAGTGCAAACGAAGTACT AAATTTCAGTGTCAAACTGTAGACAGTAACATTTTCTTGATATATGTTTATAGAAGAAAA TCTTGTGATGCGGAAAAGTGCATGTGCAAACATCGTTTCATTGCGAGATTATGGTATTGC TCTGAAGTGAAGAAATATCATGTGCATTGAGAGCAAAGGTGTTCCCTTTTTTCTTGAGTG CAGATGACGGCAAGTCGGCAACACAAGACAGGGGATTTGCTTAATGTAAGATGTTCATAC TAAGTCAAGGGATTTGCTTTAATGTTAAGTTGTCACACTAAGCCAAAAAGCATGTACTCC AATTTCAATGCTATGATAAAGAGCAAATTTGC



consensusID : consensus_9924#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1300
fasta sequence
                              [TTCCTCGAGCACTGTTGGCCTACTGGGAAAAACGCCACCACCAACAACACGCGAACGCTGAAGAGATAAGTCGAGAGAACCCTGCGCCGTCGCCGACGATGGGGCTCGCCGGCGGGGCGCGCGTGGTGCTCTTCGTCGTGGCGGCGGCGGCGGCTGCGGCTCTGACTGCCGCCGCCGATCAGATCTTCACCAGTTCAGGTGCGCCGTTTGGGCGGAATTCGCGTGAGCCGAGGTACCATGTTGAGTTCCATCCTGTCGATGCGCCATTTAATCCAGAGAATGGCCAGGAATCTGTACCAATGACTAGCCACGTGGGGAAACATTATACATGCTTCCTACCTGTTGAGGAAACAAAAACCATGAAGTCGATAATCCCACAAAACGCAACCAATGTTATCATAGAAAGTGAACGGAGAGTTAAGCCAAAGGATCCAGATGAATTGCTGGAAATTCTCAAGGATCAGTGCTTCTACAGGCATGAAGGTTGGTGGTCTTATGAATTTTGCTACTACGGGAAAATCCGACAAGTCCACGTAGAGGGCGAGAAGGTTATTCAAGAATATGTTCTGGGTGAATATGATGCTGATGCAACTGATGCTTACTATGAAAATCAAACATCTGACTCTGCTGATGAAGATGATAACCTGATAGACACCTCTAAGAGGTATCATGTCCACCTGTACACAAATGGGACTGTCTGCGATCTCACTGATATGCCCCGGGAAACAGAGGTTAGATTTGTATGTTCAGAACCCACTGTAGTGATTAGTTCAATTAAGGAGATCTCTTCCTGCAAATATGTTTTAACAGTTCAAAGCCCAATGCTTTGCAAGAATCCGCTATTTCAGCAAGAAAAACGTACCCTCTCCATTCACTGCAACGAGTTGCTAGCTGAAGCTGAAGCCACTGTGGATGATGACTCTCTTCCAAAAGAAGCTCAGATCATCATCCCAGATCCAGATGGATTGCATAATTATGCAGCTTATGGTACTTGATTATGC-ATCATTGTTATAGCATCAGACAGTGAAGAAAATCATCTTCCGGGTGCAACGGCAATTTGGCAATGCTAACAATGGTATAGGTTGTTCGCGGAGCATATTATCCATTCATGTGAAGCAGGTTTGAGATCATCAGACTAACATTGATCATGAGGAACATTACGGGCGATGAGTGCTTCTGTACTAGTGCAAACGAAGTACTAAATTTCAGTGTCAAACTGTAGACAGTAACATTTTCTTGATATATGTTTATAGAAGAAAATCTTGTGATGCGGAAAAAAAAAAAAAAAAAAAAGGCCACA]

[+] EMBL AK109442             [TTCCTCGAGCACTGTTGGCCTACTGGGAAAAACGCCACCACCAACAACACGCGAACGCTGAAGAGATAAGTCGAGAGAACCCTGCGCCGTCGCCGACGATGGGGCTCGCCGGCGGGGCGCGCGTGGTGCTCTTCGTCGTGGCGGCGGCGGCGGCTGCGGCTCTGACTGCCGCCGCCGATCAGATCTTCACCAGTTCAGGTGCGCCGTTTGGGCGGAATTCGCGTGAGCCGAGGTACCATGTTGAGTTCCATCCTGTCGATGCGCCATTTAATCCAGAGAATGGCCAGGAATCTGTACCAATGACTAGCCACGTGGGGAAACATTATACATGCTTCCTACCTGTTGAGGAAACAAAAACCATGAAGTCGATAATCCCACAAAACGCAACCAATGTTATCATAGAAAGTGAACGGAGAGTTAAGCCAAAGGATCCAGATGAATTGCTGGAAATTCTCAAGGATCAGTGCTTCTACAGGCATGAAGGTTGGTGGTCTTATGAATTTTGCTACTACGGGAAAATCCGACAAGTCCACGTAGAGGGCGAGAAGGTTATTCAAGAATATGTTCTGGGTGAATATGATGCTGATGCAACTGATGCTTACTATGAAAATCAAACATCTGACTCTGCTGATGAAGATGATAACCTGATAGACACCTCTAAGAGGTATCATGTCCACCTGTACACAAATGGGACTGTCTGCGATCTCACTGATATGCCCCGGGAAACAGAGGTTAGATTTGTATGTTCAGAACCCACTGTAGTGATTAGTTCAATTAAGGAGATCTCTTCCTGCAAATATGTTTTAACAGTTCAAAGCCCAATGCTTTGCAAGAATCCGCTATTTCAGCAAGAAAAACGTACCCTCTCCATTCACTGCAACGAGTTGCTAGCTGAAGCTGAAGCCACTGTGGATGATGACTCTCTTCCAAAAGAAGCTCAGATCATCATCCCAGATCCAGATGGATTGCATAATTATGCAGCTTATGCTACTTGATTATGC ATCATTGTTATAGCATCAGACAGTGAAGAAAATCATCTTCCGGGTGCAACGGCAATTTGGCAATGCTAACAATGGTATAGGTTGTTCGCGGAGCATATTATCCATTCATGTGAAGCAGGTTTGAGATCATCAGACTAACATTGATCATGAGGAACATTACGGGCGATGAGTGCTTCTGTACTAGTGCAAACGAAGTACTAAATTTCAGTGTCAAACTGTAGACAGTAACATTTTCTTGATATATGTTTATAGAAGAAAATCTTGTGATGCGGAAAAAAAAAAAAAAAAAAAAGGCCACA]
[+] EMBL CB668846             [                                                                                              GACGCTGGGGCTCGCCGGCGGGGCGCGCGTGGTGCTCTTCGTCGTGGCGGCGGCGGCGGCTGCGGCTCTGACTGCCGCCGCCGATCAGATCTTCACCAGTTCAGGTGCGCCGTTTGGGCGGAATTCGCGTGAGCCGAGGTACCATGTTGAGTTCCATCCTGTCGATGCGCCATTTAATCCAGAGAATGGCCAGGAATCTGTACCAATGACTAGCCACGTGGGGAAACATTATACATGCTTCCTACCTGTTGAGGAAACAAAAACCATGAAGTCGATAATCCCACAAAACGCAACCAATGTTATCATAGAAAGTGAACGGAGAGTTAAGCCAAAGGATCCAGATGAATTGCTGGAAATTCTCAAGGATCAGTGCTTCTACAGGCATGAAGGTTGGTGGTCTTATGAATTTTGCTACTACGGGAAAATCCGACAAGTCCACGTAGAGGGCGAGAAGGTTATTCAAGAATATGTTCTGGGTGAATATGATGCTGATGCAACTGATGCTTACTATGAAAATCAAACATCTGACTCTGCTGATGAAGATGATAACCTGATAGACACCTCTAAGAGGTATCATGTCCACCTGTACACAAATGGGACTGTCTGCGATCTCACTGATATGCCCCGGGAAACAGAGGTTAGATTTGTATGTTCAGAACCCACTGTAGTGATTAGTTCAATTAAGGAGATCTCTTCCTGCAAATATGTTTTAACAGTTCAAAGCCCAATGCTTTGCAAGAATCCGCTATTTCAGCAAGAAAAACGTACCCTCTCCATTCACTGCAACGAGTTGCTAGCTGAAGCTGAAGCCACTGTGGAT                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB668847             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGGAAACAGAGGTTAGATTTGTATGTTCAGAACCCCCCGTAGGGATTAGTTCAATTAAGGAGATTTTTTCCTGCAAATATGTTTTAACAGTTCAAAGCCCAATGCTTTGCAAGAATCCGCTATTTCAGCAAGAAAAACGTTCCCTTTCCATTCACTGCAAGGAGTTGTTAGCTGAAGCTGAAGCCCCTGGGGATGATGACTTTTTTCCAAAAGAAGGTCAGATCATTTTCCCAGATCCAGATGGATTGCATAATTATGCAGCTTATGGTACTTGATTATGC ATCATTGTTATAGCATCAGCCAGGGAAGAAAATCATTTTCCGGGGGCAACGGCAATTTGGCAATGCTAACAATGGTATAGGTTGTTCGCGGGGCATATTTTCCATTCATGTGAAGCAGGTTTGAGATCATCAGACTAACATTGATCATGAGGAACATTTCGGGGGAGGAGGGGTTTTGTATTAGGGCAAACGAAGTTTTAAAGTTCAGTGTCAAACTGTAGCCCGTAACATTTTTTTGATATATGTTTATAGAAGAAAATTTTGgg                                 ]
[+] EMBL AU174300             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTCACTGCAACGAGTTGCTAGCTGAAGCTGAAGCCACTGTGGATGATGACTCTCTTCCAAAAGAAGCTCAGATCATCATCCCAGATCCAGATGGATTGCATAATTATGCAGCTTATGNTACTTGATTATGCGATCATTGTTATAGCATCAGACAGTGAAGAAAATCATNTTCCGGGTGCAACGGCAATTTGGCAATGCTAACAATGGTATAGGTTGTTCGCGGAGCATATTATCCATTCATGTGAAGCAGGTTTGAGATCATCAGACTAACATTGATCATGAGGAACATTACGGGCGATGAGTGCTTNTGTACTAGTGCAAACGAAGTACTAAATTTCAGTGTCAAACTGTAGACAGTAACATTTTCTTGATATATGTTTATAGAAGAAAATCTTGTGATGCGGAAAAAAAAAAAAAA             ]


>consensus_9924#1 TTCCTCGAGCACTGTTGGCCTACTGGGAAAAACGCCACCACCAACAACACGCGAACGCTG AAGAGATAAGTCGAGAGAACCCTGCGCCGTCGCCGACGATGGGGCTCGCCGGCGGGGCGC GCGTGGTGCTCTTCGTCGTGGCGGCGGCGGCGGCTGCGGCTCTGACTGCCGCCGCCGATC AGATCTTCACCAGTTCAGGTGCGCCGTTTGGGCGGAATTCGCGTGAGCCGAGGTACCATG TTGAGTTCCATCCTGTCGATGCGCCATTTAATCCAGAGAATGGCCAGGAATCTGTACCAA TGACTAGCCACGTGGGGAAACATTATACATGCTTCCTACCTGTTGAGGAAACAAAAACCA TGAAGTCGATAATCCCACAAAACGCAACCAATGTTATCATAGAAAGTGAACGGAGAGTTA AGCCAAAGGATCCAGATGAATTGCTGGAAATTCTCAAGGATCAGTGCTTCTACAGGCATG AAGGTTGGTGGTCTTATGAATTTTGCTACTACGGGAAAATCCGACAAGTCCACGTAGAGG GCGAGAAGGTTATTCAAGAATATGTTCTGGGTGAATATGATGCTGATGCAACTGATGCTT ACTATGAAAATCAAACATCTGACTCTGCTGATGAAGATGATAACCTGATAGACACCTCTA AGAGGTATCATGTCCACCTGTACACAAATGGGACTGTCTGCGATCTCACTGATATGCCCC GGGAAACAGAGGTTAGATTTGTATGTTCAGAACCCACTGTAGTGATTAGTTCAATTAAGG AGATCTCTTCCTGCAAATATGTTTTAACAGTTCAAAGCCCAATGCTTTGCAAGAATCCGC TATTTCAGCAAGAAAAACGTACCCTCTCCATTCACTGCAACGAGTTGCTAGCTGAAGCTG AAGCCACTGTGGATGATGACTCTCTTCCAAAAGAAGCTCAGATCATCATCCCAGATCCAG ATGGATTGCATAATTATGCAGCTTATGGTACTTGATTATGCATCATTGTTATAGCATCAG ACAGTGAAGAAAATCATCTTCCGGGTGCAACGGCAATTTGGCAATGCTAACAATGGTATA GGTTGTTCGCGGAGCATATTATCCATTCATGTGAAGCAGGTTTGAGATCATCAGACTAAC ATTGATCATGAGGAACATTACGGGCGATGAGTGCTTCTGTACTAGTGCAAACGAAGTACT AAATTTCAGTGTCAAACTGTAGACAGTAACATTTTCTTGATATATGTTTATAGAAGAAAA TCTTGTGATGCGGAAAAAAAAAAAAAAAAAAAAGGCCACA



consensusID : consensus_9924#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 187
fasta sequence
                              [TGTAAGAGATAAGTCGAGAGAACCCTGNGCCGTCGCCGACGACTGGGGCTCGCCGGCGGGGCGCGCGTGGTGCTCTTCGTCGTGGNGNGGGCGGCGGCTGNGGCTCTAANTGCCGCCGCCGATCAATTCTTCACCATTTCAGGTGCGCCGTTTGGCCGGANTTNNNGNNACCGAGGTACCATNTTNA]

[+] EMBL OSS3861A             [TGTAAGAGATAAGTCGAGAGAACCCTGNGCCGTCGCCGACGACTGGGGCTCGCCGGCGGGGCGCGCGTGGTGCTCTTCGTCGTGGNGNGGGCGGCGGCTGNGGCTCTAANTGCCGCCGCCGATCAATTCTTCACCATTTCAGGTGCGCCGTTTGGCCGGANTTNNNGNNACCGAGGTACCATNTTNA]


>consensus_9924#2 TGTAAGAGATAAGTCGAGAGAACCCTGNGCCGTCGCCGACGACTGGGGCTCGCCGGCGGG GCGCGCGTGGTGCTCTTCGTCGTGGNGNGGGCGGCGGCTGNGGCTCTAANTGCCGCCGCC GATCAATTCTTCACCATTTCAGGTGCGCCGTTTGGCCGGANTTNNNGNNACCGAGGTACC ATNTTNA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9924#0      ------------------------------------------------------------
consensus_9924#1      TTCCTCGAGCACTGTTGGCCTACTGGGAAAAACGCCACCACCAACAACACGCGAACGCTG 60
consensus_9924#2      ---------------------------------------------------------TGT 3
                                                                                  

consensus_9924#0      --------AGTCGAGAGAACCCTGCGCCGTCGCCGACGA-TGGGGCTCGCCGGCGGGGCG 51
consensus_9924#1      AAGAGATAAGTCGAGAGAACCCTGCGCCGTCGCCGACGA-TGGGGCTCGCCGGCGGGGCG 119
consensus_9924#2      AAGAGATAAGTCGAGAGAACCCTGNGCCGTCGCCGACGACTGGGGCTCGCCGGCGGGGCG 63
                              **************** ************** ********************

consensus_9924#0      CGCGTGGTGCTCTTCGTCGTGGCGGCGGCGGCGGCTGCGGCTCTGACTGCCGCCGCCGAT 111
consensus_9924#1      CGCGTGGTGCTCTTCGTCGTGGCGGCGGCGGCGGCTGCGGCTCTGACTGCCGCCGCCGAT 179
consensus_9924#2      CGCGTGGTGCTCTTCGTCGTGGNGNGGGCGGCGGCTGNGGCTCTAANTGCCGCCGCCGAT 123
                      ********************** *  *********** ****** * *************

consensus_9924#0      CAGATCTTCACCAGTTCAGGTGCGCCGTTTGGGCGGAATTCGCGTGAGCCGAGGTACCAT 171
consensus_9924#1      CAGATCTTCACCAGTTCAGGTGCGCCGTTTGGGCGGAATTCGCGTGAGCCGAGGTACCAT 239
consensus_9924#2      CAATTCTTCACCATTTCAGGTGCGCCGTTTGGCCGGANTTNNNGNNA-CCGAGGTACCAT 182
                      **  ********* ****************** **** **   *  * ************

consensus_9924#0      GTTGAGTTCCATCCTGTCGATGCGCCATTTAATCCAGAGAATGGCCAGGAATCTGTACCA 231
consensus_9924#1      GTTGAGTTCCATCCTGTCGATGCGCCATTTAATCCAGAGAATGGCCAGGAATCTGTACCA 299
consensus_9924#2      NTTNA------------------------------------------------------- 187
                       ** *                                                       

consensus_9924#0      ATGACTAGCCACGTGGGGAAACATTATACATGCTTCCTACCTGTTGAGGAAACAAAAACC 291
consensus_9924#1      ATGACTAGCCACGTGGGGAAACATTATACATGCTTCCTACCTGTTGAGGAAACAAAAACC 359
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      ATGAAGTCGATAATCCCACAAAACGCAACCAATGTTATCATAGAAAGTGAACGGAGAGTT 351
consensus_9924#1      ATGAAGTCGATAATCCCACAAAACGCAACCAATGTTATCATAGAAAGTGAACGGAGAGTT 419
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      AAGCCAAAGGATCCAGATGAATTGCTGGAAATTCTCAAGGATCAGTGCTTCTACAGGCAT 411
consensus_9924#1      AAGCCAAAGGATCCAGATGAATTGCTGGAAATTCTCAAGGATCAGTGCTTCTACAGGCAT 479
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      GAAGGTTGGTGGTCTTATGAATTTTGCTACTACGGGAAAATCCGACAAGTCCACGTAGAG 471
consensus_9924#1      GAAGGTTGGTGGTCTTATGAATTTTGCTACTACGGGAAAATCCGACAAGTCCACGTAGAG 539
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      GGCGAGAAGGTAAGCTGCCCCATCCTGTTTATTTTCTTTGCTCAGATCAGTCATTGTATT 531
consensus_9924#1      GGCGAGAAGGT------------------------------------------------- 550
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      TTATCCTCTTTATGCACTATCTAAAAAATATCTGAGATGCGTCAATCCAAGAGTTGCTAG 591
consensus_9924#1      ------------------------------------------------------------
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      TTTTTACAGGAGAGACAAGTTCTGGCCACAGTTACACACTACATTATGAAAAATAAAATA 651
consensus_9924#1      ------------------------------------------------------------
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      TTTTATCTTTGACAATAAATGCAGCCGACAGTTTCTAGAGCACTTGAATTGCCACGTAAA 711
consensus_9924#1      ------------------------------------------------------------
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      GTTTGTGTTGTTTGCAGGTTATTCAAGAATATGTTCTGGGTGAATATGATGCTGATGCAA 771
consensus_9924#1      -------------------TATTCAAGAATATGTTCTGGGTGAATATGATGCTGATGCAA 591
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      CTGATGCTTACTATGAAAATCAAACATCTGACTCTGCTGATGAAGGTGATAACCTGATAG 831
consensus_9924#1      CTGATGCTTACTATGAAAATCAAACATCTGACTCTGCTGATGAAGATGATAACCTGATAG 651
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      ACACCTCTAAGAGGTATCATGTCCACCTGTACACAAATGGGACTGTCTGCGATCTCACTG 891
consensus_9924#1      ACACCTCTAAGAGGTATCATGTCCACCTGTACACAAATGGGACTGTCTGCGATCTCACTG 711
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      ATATGCCCCGGGAAACAGAGGTTAGATTTGTATGTTCAGAACCCACTGTAGTGATTAGTT 951
consensus_9924#1      ATATGCCCCGGGAAACAGAGGTTAGATTTGTATGTTCAGAACCCACTGTAGTGATTAGTT 771
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      CAATTAAGGAGATCTCTTCCTGCAAATATGTTTTAACAGTTCAAAGCCCAATGCTTTGCA 1011
consensus_9924#1      CAATTAAGGAGATCTCTTCCTGCAAATATGTTTTAACAGTTCAAAGCCCAATGCTTTGCA 831
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      AGAATCCGCTATTTCAGCAAGAAAAACGTACCCTCTCCATTCACTGCAACGAGTTGCTAG 1071
consensus_9924#1      AGAATCCGCTATTTCAGCAAGAAAAACGTACCCTCTCCATTCACTGCAACGAGTTGCTAG 891
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      CTGAAGCTGAAGCCACTGTGGATGATGACTCTCTTCCAAAAGAAGCTCAGATCATCATCC 1131
consensus_9924#1      CTGAAGCTGAAGCCACTGTGGATGATGACTCTCTTCCAAAAGAAGCTCAGATCATCATCC 951
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      CAGATCCAGATGGATTGCATAATTATGCAGCTTATGCTACTTGATTATGCATCATTGTTA 1191
consensus_9924#1      CAGATCCAGATGGATTGCATAATTATGCAGCTTATGGTACTTGATTATGCATCATTGTTA 1011
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      TAGCATCAGACAGTGAAGAAAATCATCTTCCGGGTGCAACGGCAATTTGGCGATGCTAAC 1251
consensus_9924#1      TAGCATCAGACAGTGAAGAAAATCATCTTCCGGGTGCAACGGCAATTTGGCAATGCTAAC 1071
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      AATGGTATAGGTTGTTCGCGGAGCATATTATCCATTCATGTGAAGCAGGTTTGAGATCAT 1311
consensus_9924#1      AATGGTATAGGTTGTTCGCGGAGCATATTATCCATTCATGTGAAGCAGGTTTGAGATCAT 1131
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      CAGACTAACATTGATCATGAGGAACATTACGGGCGATGAGTGCTTCTGTACTAGTGCAAA 1371
consensus_9924#1      CAGACTAACATTGATCATGAGGAACATTACGGGCGATGAGTGCTTCTGTACTAGTGCAAA 1191
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      CGAAGTACTAAATTTCAGTGTCAAACTGTAGACAGTAACATTTTCTTGATATATGTTTAT 1431
consensus_9924#1      CGAAGTACTAAATTTCAGTGTCAAACTGTAGACAGTAACATTTTCTTGATATATGTTTAT 1251
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      AGAAGAAAATCTTGTGATGCGGAAAAGTGCATGTGCAAACATCGTTTCATTGCGAGATTA 1491
consensus_9924#1      AGAAGAAAATCTTGTGATGCGGAAAAAAAAAAAAAAAAAAAAGGCCACA----------- 1300
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      TGGTATTGCTCTGAAGTGAAGAAATATCATGTGCATTGAGAGCAAAGGTGTTCCCTTTTT 1551
consensus_9924#1      ------------------------------------------------------------
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      TCTTGAGTGCAGATGACGGCAAGTCGGCAACACAAGACAGGGGATTTGCTTAATGTAAGA 1611
consensus_9924#1      ------------------------------------------------------------
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      TGTTCATACTAAGTCAAGGGATTTGCTTTAATGTTAAGTTGTCACACTAAGCCAAAAAGC 1671
consensus_9924#1      ------------------------------------------------------------
consensus_9924#2      ------------------------------------------------------------
                                                                                  

consensus_9924#0      ATGTACTCCAATTTCAATGCTATGATAAAGAGCAAATTTGC 1712
consensus_9924#1      -----------------------------------------
consensus_9924#2      -----------------------------------------
                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)