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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1222 fasta sequence
[GCACATTCGACCATCTCACTAGCTAATCGCTGGTACTGGAAGCAGTAGTAGCAGCTTGCCAAAAATGGCGCCATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCAC-ACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACGCCGCGGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAGGCGCTCGCCTCGCTGGACGACACGCCGACCACCGTGGACACCGACTACTACCAGGGCCTCACGCAGGGCCGCGCGCTGCTGCACACGGACCAGCAGCTGTACCAGGGCGGCGGCGGCGGCGACAGCGACGAGCTGGTCAAGTACTACGGCGAGAACCCGGACAAGTTCTGGGAGGACTTCGGCGCCGCCATGGTGAAGATGGGCAACATCAGCCCGCTCACCGGCGACGACGGCGAGATCAGGGAGAACTGCCGGGTTGTTAACCAGTGAGTGATCGATCGATCCTGGTGTGGTCAAGCGACACACGACACGAGTCATCGCCACGAATTTGCATGGCACCTGTGGTAGCTGCTGATTTCTTGAAGGGTGTGCTTGCATGTACTTCTGATTTTGTGATGGCCTGCTCTTGTATTTGAATTGTTTTGAAAATTATGTTCCATTTCAACCAAAAATTTAATATCT]
[+] EMBL AK060984 [ CACATTCGACCATCTCACTAGCTAATCGCTGGTACTGGAAGCAGTAGTAGCAGCTTGCCAAAAATGGCGCCATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCAC ACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACGCCGCGGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAGGCGCTCGCCTCGCTGGACGACACGCCGACCACCGTGGACACCGACTACTACCAGGGCCTCACGCAGGGCCGCGCGCTGCTGCACACGGACCAGCAGCTGTACCAGGGCGGCGGCGGCGGCGACAGCGACGAGCTGGTCAAGTACTACGGCGAGAACCCGGACAAGTTCTGGGAGGACTTCGGCGCCGCCATGGTGAAGATGGGCAACATCAGCCCGCTCACCGGCGACGACGGCGAGATCAGGGAGAACTGCCGGGTTGTTAACCAGTGAGTGATCGATCGATCCTGGTGTGGTCAAGCGACACACGACACGAGTCATCGCCACGAATTTGCATGGCACCTGTGGTAGCTGCTGATTTCTTGAAGGGTGTGCTTGCATGTACTTCTGATTTTGTGATGGCCTGCTCTTGTATTTGAATTGTTTTGAAAATTATGTTCCATTTCAACCAAAA ]
[-] EMBL CB642575 [gcacgaggGACCATCTCACTAGCTAATCGCTGGTACTGGAAGCAGTAGTAGCAGCTTGCCAAAAATGGCGCCATTTCTTGTCGTGTTCGCCGTCATGGCCGCGGCTTTAGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTGTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGACCAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAAGGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTGGTCGACAACTTAGAGTCCCACGCCTTGGCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCACAACGCTGGGCTAC ]
[+] EMBL CB650950 [ TGGTACTGGAAGCAGTAGTAGCAGCTTGCCAAAAATGGCGCCATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCAC ACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACGCCGCGGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAGGCGCTCGCCTCGCTGGACGACACGCCGACCACCGTGGACACCGACTACTACCAGGGCCTCACGCAGGGCCGCGCGC ]
[+] EMBL CB642574 [ gtCTTGCCAAAAATGGCGCCATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCAC ACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTA ]
[-] EMBL CB650951 [ CTCGTGATTCAATCGTCGCGTTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCAC ACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACGCCGCGGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAGGCGCTCGCCTCGCTGGACGACACGCCGACCACCGTGGACACCGACTACTACCAGGGCCTCACGCAGGGCCGCGCGCTGCTGCACACGGACCAGCAGCTGTACCAGGGCGGCGGCGGCGGCGACAGCGACGAGCTGGTCAAGTACTACGGCGAGAACCCGGACAAGTTCTGGGAGGACTTCGGCGCCGCCATGGTGAAGATGGGCAACATCAGCCCGCTCACCGGCGACGACGGCGAGATCAGGGAGAACTGCCGGGTTGTTAACCAGTGAGTGATCGATCGATCCTGGTGTGGTCAAGCGACACACGACACGAGTCATCGCCACGAATTTGCATGGCACCTGTGGTAGCTGCTGATTTCTTGAAGGGGGTGCTTGCATGTACTTCTGATTTTGTGATGGCCTGCTCTTGTATTTGAATTGTTTTGAAAATTATGTTCCATGTCAACCAAAAATTTAATATCT]
[-] EMBL CB662184 [ TCCCGCTGCTTTTTGTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACTCCGCGGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAGGCGCTCGCCTCGCTGGACGACACGCCGACCACCGTGGACACCGATTACTACCAGGGCCTCACGCAGGGCCGCGCGCTGCTGCACACGGACCAGCAGCTGTACCAGGGCGGCGGCGGCGGCGACAGCGACGAGCTGGTCAAGTACTACGGCGAGAACCCGGACAAGTTCTGGGAGGACTTCGGCGCCGCCATGGTGAAGATGGGCAACATCAGCCCGCTCACCGGCGACGACGGCGAGATCAGGGAGAACTGCCGGGTTGTTAACCAGTGAGTGATCGATCGATCCTGGTGTGGTCAAGCGACACACGACACGAGTCATCGCCACGAATTTGCATGGCACCTGTGGTAGCTGCTGATTTCTTGAAGGGTGTGCTTGCATGTACTTCTGATTTTGTGATGGCCTGCTCTTGTATTTGAATTGTTTTGAAAAGGATGTTCCATTTCAACCAAAAATTT ]
consensusID : consensus_9926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence
[CAAAAACTTTACATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCACACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACG]
[+] EMBL CB662183 [CAAAAACTTTACATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCACACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9926#0 GCACATTCGACCATCTCACTAGCTAATCGCTGGTACTGGAAGCAGTAGTAGCAGCTTGCC 60
consensus_9926#1 -----------------------------------------------------------C 1
*
consensus_9926#0 AAAAATGGCGCCATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTC 120
consensus_9926#1 AAAAACTTTAC-ATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTC 60
***** * ************************************************
consensus_9926#0 CGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGAC 180
consensus_9926#1 CGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGAC 120
************************************************************
consensus_9926#0 CATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGT 240
consensus_9926#1 CATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGT 180
************************************************************
consensus_9926#0 CCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGA 300
consensus_9926#1 CCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGA 240
************************************************************
consensus_9926#0 CACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTT 360
consensus_9926#1 CACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTT 300
************************************************************
consensus_9926#0 CGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTC 420
consensus_9926#1 CGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTC 360
************************************************************
consensus_9926#0 CTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTC 480
consensus_9926#1 CTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTC 420
************************************************************
consensus_9926#0 GTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGA 540
consensus_9926#1 GTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGA 480
************************************************************
consensus_9926#0 CGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGG 600
consensus_9926#1 CGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGG 540
************************************************************
consensus_9926#0 CTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCACACGCTGGGCTACTCCCGCTG 660
consensus_9926#1 CTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCACACGCTGGGCTACTCCCGCTG 600
************************************************************
consensus_9926#0 CCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACGCCGC 720
consensus_9926#1 CCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACG---- 656
********************************************************
consensus_9926#0 GGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAGGCGCTCGCCTCGCTGGACGA 780
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 CACGCCGACCACCGTGGACACCGACTACTACCAGGGCCTCACGCAGGGCCGCGCGCTGCT 840
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 GCACACGGACCAGCAGCTGTACCAGGGCGGCGGCGGCGGCGACAGCGACGAGCTGGTCAA 900
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 GTACTACGGCGAGAACCCGGACAAGTTCTGGGAGGACTTCGGCGCCGCCATGGTGAAGAT 960
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 GGGCAACATCAGCCCGCTCACCGGCGACGACGGCGAGATCAGGGAGAACTGCCGGGTTGT 1020
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 TAACCAGTGAGTGATCGATCGATCCTGGTGTGGTCAAGCGACACACGACACGAGTCATCG 1080
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 CCACGAATTTGCATGGCACCTGTGGTAGCTGCTGATTTCTTGAAGGGTGTGCTTGCATGT 1140
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 ACTTCTGATTTTGTGATGGCCTGCTCTTGTATTTGAATTGTTTTGAAAATTATGTTCCAT 1200
consensus_9926#1 ------------------------------------------------------------
consensus_9926#0 TTCAACCAAAAATTTAATATCT 1222
consensus_9926#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||