cluster # 9930

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Oryza sativa
cluster # 9930 cluster # 9930 Sequences # 7 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9930#0 length = 1107 sequences # 3
consensus_9930#1 length = 843 sequences # 1

consensus_9930#2 length = 704 sequences # 1
consensus_9930#3 length = 576 sequences # 1
consensus_9930#4 length = 250 sequences # 1

consensusID : consensus_9930#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1107
fasta sequence

                              [CGCAGAGGCAAAAGCTCGAACACATGGCGCGCGCCCTAGTCCGCCGGGCTCTCTCCCTCGCCGCCGCGGCCTCCTCCCCGGCGAAACCATCCTTCTCCACCGTCGTCGCGCCGCTGCGCTCCCCGATGGACGACCGCCTCCTCCGCCTCCTGCGCTCCGAGATCAACTACATCTCCGAACGCCGCCCTCCCTACCCGCCGCCGAAGGCCTTCAAATCGTTCGGGGTGGAGGACCGCCCGGGGGAGCAGTGGGTGCGCCTCCGCGCCACCCGCGGCGCCCAGGACGAGGAGGTCAAGGTCGACGCCACCATGTTCGACGGCGCCGCCGCCCCGCCCCCAGACGCGCCCCTCTTCCGCCGCGTCGAGTCGCTCGAGCGCGGCCCGCGCCTCCACCTCAGCCTCATCGTCGAGGTCTCCCGGGCGGACCGCGTCCTCGGCTTCATCTGCTCCGCCTGGCACGACGAACTCGTCGTCCGCCACGTCCTCACTCTCCGGGACGCCGATGGCTCCAGCACCAGCAGCGGAGGCCGCGACTTCGTCAAGCTGGAGGCTAGGGAGAGGGAGTCGGTGAGGAAATTCTTGCAGGAGAGGGA-GTGGATGACGAGCTTGCCGAGTTCTTGC-ACGACTACATGGCGAACAAGGAAAAGATGGAGCTTCTCCGGTGGTTGAAGACTGTCGAATCATTCGTCGAGAAGTAGGCACAGGAGAAGCAGATAAATCAGGAGTTCCTTGCTGGTATCCGCATGACTCTGGACTTATTTCAAAGTTCAAACTATGGGAACTGAAA-ACAAATAGCGTCTGGGAAGTGATGATAAGAGCTGCTGTCCTACACACCATGTAAATTATCCACCTCAGTGGTTCAATCCCA-TTGTTCGTGCTGTATGACTCTAGCAATGAGCTGGGTTTTCAGCATATTCTGTGGTTCAATTCTAGTCACATTTGAGAAGATCACTAGGCACGCTCGTCTGATTATATTGGTGCTATGGAGCACTACCA-TTTGCTGTGGAATACAGACAATTCTTATGCGGTTGGTTGTATGGCAATTGCTCGCCTATTCATTTTTATTTTAAACAATATAAGTAGATCTCCTACTGTGCTAAAAAAAAAA]

[+] EMBL AK099503             [CGCAGAGGCAAAAGCTCGAACACATGGCGCGCGCCCTAGTCCGCCGGGCTCTCTCCCTCGCCGCCGCGGCCTCCTCCCCGGCGAAACCATCCTTCTCCACCGTCGTCGCGCCGCTGCGCTCCCCGATGGACGACCGCCTCCTCCGCCTCCTGCGCTCCGAGATCAACTACATCTCCGAACGCCGCCCTCCCTACCCGCCGCCGAAGGCCTTCAAATCGTTCGGGGTGGAGGACCGCCCGGGGGAGCAGTGGGTGCGCCTCCGCGCCACCCGCGGCGCCCAGGACGAGGAGGTCAAGGTCGACGCCACCATGTTCGACGGCGCCGCCGCCCCGCCCCCAGACGCGCCCCTCTTCCGCCGCGTCGAGTCGCTCGAGCGCGGCCCGCGCCTCCACCTCAGCCTCATCGTCGAGGTCTCCCGGGCGGACCGCGTCCTCGGCTTCATCTGCTCCGCCTGGCACGACGAACTCGTCGTCCGCCACGTCCTCACTCTCCGGGACGCCGATGGCTCCAGCACCAGCAGCGGAGGCCGCGACTTCGTCAAGCTGGAGGCTAGGGAGAGGGAGTCGGTGAGGAAATTCTTGCAGGAGAGGGAGGTGGATGACGAGCTTGCCGAGTTCTTGC ACGACTACATGGCGAACAAGGAAAAGATGGAGCTTCTCCGGTGGTTGAAGACTGTCGAATCATTCGTCGAGAAGTAGGCACAGGAGAAGCAGATAAATCAGGAGTTCCTTGCTGGTATCCGCATGACTCTGGACTTATTTCAAAGTTCAAACTATGGGAACTGAAA ACAAATAGCGTCTGGGAAGTGATGATAAGAGCTGCTGTCCTACACACCATGTAAATTATCCACCTCAGTGGTTCAATCCCA TTGTTCGTGCTGTATGACTCTAGCAATGAGCTGGGTTTTCAGCATATTCTGTGGTTCAATTCTAGTCACATTTGAGAAGATCACTAGGCACGCTCGTCTGATTATATTGGTGCTATGGAGCACTACCA TTTGCTGTGGAATACAGACAATTCTTATGCGGTTGGTTGTATGGCAATTGCTCGCCTATTCATTTTTATTTTAAACAATATAAG                            ]
[+] EMBL CA754246             [                  AACACATGGCGCGCGCCCTAGTCCGCCGGGCTCTCTCCCTCGCCGCCGCGGCCTCCTCCCCGGCGAAACCATCCTTCTCCACCGTCGTCGCGCCGCTGCGCTCCCCGATGGACGACCGCCTCCTCCGCCTCCTGCGCTCCGAGATCAACTACATCTCCGAACGCCGCCCTCCCTACCCGCCGCCGAAGGCCTTCAAATCGTTCGGGGTGGAGGACCGCCCGGGGGAGCAGTGGGTGCGCCTCCGCGCCACCCGCGGCGCCCAGGACGAGGAGGTCAAGGTCGACGCCACCATGTTCGACGGCGCCGCCGCCCCGCCCCCAGACGCGCCCCTCTTCCGCCGCGTCGAGTCGCTCGAGCGCGGCCCGCGCCTCCACCTCAGCCTCATCGTCGAGGTCTCCCGGGCGGACCGCGTCCTCGGCTTCATCTGCTCCGCCTGGCACGACGAACTCGTCGTCCGCCACGTCCTCACTCTCCGGGACGCCGATGGCTCCAGCACCAGCAGCGGAGGCCGCGACTTCGTCCAGCTGGAGGCTAGGGAGAGGGAGCCGGTGAGGAAATTCTTGCAGGAGAGGGA GTGGATGACGAGCTTGCCGAGTTCTTGC ACGACTAac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI804854             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     cccccCAACCTGGA GCTA GGA AAGGA TCGGTGAGG AATTCTTCCAGGAGAGGGA GTGGATGACGAGCT  CCGAGTTCTTGCAACGACTACATGGCGAACAAGGAAAAGATGGAGCTTCTCCGGTGGTTGAAGACTGTCGAATCATTCGTCGAGAAGTAGGCACAGGAGAA CAGATAAATCAGGAGTTCCTTGCTGGTATCCGCATGACTCTGGACTTATTTCAAAGTTCAAACTATGGGAACTGAAACACCAATAGCGTCTGGGAAGTGATGATAAGAGCTGCTGTCCTACACACCATGTAAATTATCCACCTCAGTGGTTCAATCCCACTTGTTCGTGCTGTATGACTCTAGCAATGAGCTGGGTTTTCAGCATATTCTGTGGTTCAATTCTAGTCACATTTGAGAAGATCACTAGGCACGCTCGTCTGATTATATTGGTGCTATGGAGCACTACCACTTTGCTGTGGAATACAGACAATTCTTATGCGGTTGGTTGTATGGCCATTGCTCGCCTATTCATTTTTATTTTAAACAATATAAGTAGATCTCCTACTGTGCTAAAAAAAAAA]




>consensus_9930#0
CGCAGAGGCAAAAGCTCGAACACATGGCGCGCGCCCTAGTCCGCCGGGCTCTCTCCCTCG
CCGCCGCGGCCTCCTCCCCGGCGAAACCATCCTTCTCCACCGTCGTCGCGCCGCTGCGCT
CCCCGATGGACGACCGCCTCCTCCGCCTCCTGCGCTCCGAGATCAACTACATCTCCGAAC
GCCGCCCTCCCTACCCGCCGCCGAAGGCCTTCAAATCGTTCGGGGTGGAGGACCGCCCGG
GGGAGCAGTGGGTGCGCCTCCGCGCCACCCGCGGCGCCCAGGACGAGGAGGTCAAGGTCG
ACGCCACCATGTTCGACGGCGCCGCCGCCCCGCCCCCAGACGCGCCCCTCTTCCGCCGCG
TCGAGTCGCTCGAGCGCGGCCCGCGCCTCCACCTCAGCCTCATCGTCGAGGTCTCCCGGG
CGGACCGCGTCCTCGGCTTCATCTGCTCCGCCTGGCACGACGAACTCGTCGTCCGCCACG
TCCTCACTCTCCGGGACGCCGATGGCTCCAGCACCAGCAGCGGAGGCCGCGACTTCGTCA
AGCTGGAGGCTAGGGAGAGGGAGTCGGTGAGGAAATTCTTGCAGGAGAGGGAGTGGATGA
CGAGCTTGCCGAGTTCTTGCACGACTACATGGCGAACAAGGAAAAGATGGAGCTTCTCCG
GTGGTTGAAGACTGTCGAATCATTCGTCGAGAAGTAGGCACAGGAGAAGCAGATAAATCA
GGAGTTCCTTGCTGGTATCCGCATGACTCTGGACTTATTTCAAAGTTCAAACTATGGGAA
CTGAAAACAAATAGCGTCTGGGAAGTGATGATAAGAGCTGCTGTCCTACACACCATGTAA
ATTATCCACCTCAGTGGTTCAATCCCATTGTTCGTGCTGTATGACTCTAGCAATGAGCTG
GGTTTTCAGCATATTCTGTGGTTCAATTCTAGTCACATTTGAGAAGATCACTAGGCACGC
TCGTCTGATTATATTGGTGCTATGGAGCACTACCATTTGCTGTGGAATACAGACAATTCT
TATGCGGTTGGTTGTATGGCAATTGCTCGCCTATTCATTTTTATTTTAAACAATATAAGT
AGATCTCCTACTGTGCTAAAAAAAAAA

consensusID : consensus_9930#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 843
fasta sequence

                              [CTCAGCCTTCCCGGCTTACCACCTTTTCCCCACCTTCTTCCCTGCTTCCCCTCCTCTCCACCGTCAACAGCGGGCGTCGGTGGCGGCCCCGTGGGTGCGCCTCCACGCCACCCGCAGCACCCAGGATGAGGAGGTCAAGGTCGACGCCACCATGTTCGACGGCGCCGCCGTCCCGCCCCCAGACGCGCCCCTCTTCCGCCGCGTCGAGTCGCTCGACCACGTCCCGCGCCTCCACCTCGGCCTCATCATCGAGGCCTCTACCGCGACATGTTGCACCAGCACCAGAAATCATGTTCAAGCTGGAGGCTAGGGAGAGGGAGTACGTGAGGAAATTCTTGCAGGAGAGGGCGGCGGCGGCAGCGGCGGCCGGGCGAGGCGGCGCTCCCACGGGAGATTCACGACGAGATCGGCCTAGAGTTCCTCGGCAACGTCACCGGCAAGCCATACACGCTCCACGCCAACATCTTCGCCAACGGCGTCGGCAGCCGCGAGCAGCAGTCGTCGCATCTCCTCCTGGTCGTGGTCCTCATCGTGCACATCGTCGCTCGGCTCCCTTGACGACGATGCCGTCGTTGCGTGCGTCGTCAAGGCGGCGGCGAGCGGGCGAGCGGGCGGCGGCCATTTTCACTTTTTTTTTGTTTTTTTTCCGTGCGAGCGGTATAATATGACCGCATCGGGATAATCGATTATCCCGTGCGGTCCATTATCCCATACGGTTGGGCCGTCCGTACGCGAAAATATTGATTTTTTCAGACATTTGGGTATAGACGGGCAAATCCTCCGCACAGAAAAATCATTTTGACCGCAAGGAAAAATGGTTTTCGCAGTAACGAGAGACCGAAG]

[+] EMBL AK063216             [CTCAGCCTTCCCGGCTTACCACCTTTTCCCCACCTTCTTCCCTGCTTCCCCTCCTCTCCACCGTCAACAGCGGGCGTCGGTGGCGGCCCCGTGGGTGCGCCTCCACGCCACCCGCAGCACCCAGGATGAGGAGGTCAAGGTCGACGCCACCATGTTCGACGGCGCCGCCGTCCCGCCCCCAGACGCGCCCCTCTTCCGCCGCGTCGAGTCGCTCGACCACGTCCCGCGCCTCCACCTCGGCCTCATCATCGAGGCCTCTACCGCGACATGTTGCACCAGCACCAGAAATCATGTTCAAGCTGGAGGCTAGGGAGAGGGAGTACGTGAGGAAATTCTTGCAGGAGAGGGCGGCGGCGGCAGCGGCGGCCGGGCGAGGCGGCGCTCCCACGGGAGATTCACGACGAGATCGGCCTAGAGTTCCTCGGCAACGTCACCGGCAAGCCATACACGCTCCACGCCAACATCTTCGCCAACGGCGTCGGCAGCCGCGAGCAGCAGTCGTCGCATCTCCTCCTGGTCGTGGTCCTCATCGTGCACATCGTCGCTCGGCTCCCTTGACGACGATGCCGTCGTTGCGTGCGTCGTCAAGGCGGCGGCGAGCGGGCGAGCGGGCGGCGGCCATTTTCACTTTTTTTTTGTTTTTTTTCCGTGCGAGCGGTATAATATGACCGCATCGGGATAATCGATTATCCCGTGCGGTCCATTATCCCATACGGTTGGGCCGTCCGTACGCGAAAATATTGATTTTTTCAGACATTTGGGTATAGACGGGCAAATCCTCCGCACAGAAAAATCATTTTGACCGCAAGGAAAAATGGTTTTCGCAGTAACGAGAGACCGAAG]




>consensus_9930#1
CTCAGCCTTCCCGGCTTACCACCTTTTCCCCACCTTCTTCCCTGCTTCCCCTCCTCTCCA
CCGTCAACAGCGGGCGTCGGTGGCGGCCCCGTGGGTGCGCCTCCACGCCACCCGCAGCAC
CCAGGATGAGGAGGTCAAGGTCGACGCCACCATGTTCGACGGCGCCGCCGTCCCGCCCCC
AGACGCGCCCCTCTTCCGCCGCGTCGAGTCGCTCGACCACGTCCCGCGCCTCCACCTCGG
CCTCATCATCGAGGCCTCTACCGCGACATGTTGCACCAGCACCAGAAATCATGTTCAAGC
TGGAGGCTAGGGAGAGGGAGTACGTGAGGAAATTCTTGCAGGAGAGGGCGGCGGCGGCAG
CGGCGGCCGGGCGAGGCGGCGCTCCCACGGGAGATTCACGACGAGATCGGCCTAGAGTTC
CTCGGCAACGTCACCGGCAAGCCATACACGCTCCACGCCAACATCTTCGCCAACGGCGTC
GGCAGCCGCGAGCAGCAGTCGTCGCATCTCCTCCTGGTCGTGGTCCTCATCGTGCACATC
GTCGCTCGGCTCCCTTGACGACGATGCCGTCGTTGCGTGCGTCGTCAAGGCGGCGGCGAG
CGGGCGAGCGGGCGGCGGCCATTTTCACTTTTTTTTTGTTTTTTTTCCGTGCGAGCGGTA
TAATATGACCGCATCGGGATAATCGATTATCCCGTGCGGTCCATTATCCCATACGGTTGG
GCCGTCCGTACGCGAAAATATTGATTTTTTCAGACATTTGGGTATAGACGGGCAAATCCT
CCGCACAGAAAAATCATTTTGACCGCAAGGAAAAATGGTTTTCGCAGTAACGAGAGACCG
AAG

consensusID : consensus_9930#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence

                              [TCTGTCAGAGTGGGAAACGATATTAACTCTTTCACCCAAGCCGGTAGGTTAGCATCGTTAATTTATAGCAAGGCCAACAATCCAATATGACGTCCAAGAGCATGGACATATTTAAGTGACATTCATCAGTAAGCAGTTTACATTACTGGAATGAGATTTGGTAACTATATGTGCGTGATCACCTCATTTACATTTTGGAGTGTCCTATTTCAAATCAAGTAGGAGCATCAACAATTAGTCTTGTTCATCCTTTTTATCAATTAATTACCCCTGAATTAACAATCAGTGTTGTCCATTTGTCATTGTAATTTGGTTTCCTGAAACCTTTGAAGTCTGAACTCCATTTTGCATTTGCAGGAGTTCCTTGCTGGTATCCGCATGACTCTGGACTTATTTCAAAGTTCAAACTATGGGAACTGAAAACAAATAGCGTCTGGGAAGTGATGATAAGAGGTGCTGTCCTACACACCATGTAAATTATCCACCTCAGTGGTTCAATCCCATTGTTCGTGCTGTATGACTCTAGTAATGAGCTGGGTTTTCAGCATATTTTGTGGTTCAATTCTAGTCACATTTGAGAAGATCACTAGGCACGCTCGTCTGATTATATTGGTGCTATGGAGCACTACCATTTGCTGTGGAATACAGACAATTCTTATGCGGTTGGTTGTATGGCAATTGCTCGCCTATTCAAAGGGATTTTT]

[-] EMBL CB618543             [TCTGTCAGAGTGGGAAACGATATTAACTCTTTCACCCAAGCCGGTAGGTTAGCATCGTTAATTTATAGCAAGGCCAACAATCCAATATGACGTCCAAGAGCATGGACATATTTAAGTGACATTCATCAGTAAGCAGTTTACATTACTGGAATGAGATTTGGTAACTATATGTGCGTGATCACCTCATTTACATTTTGGAGTGTCCTATTTCAAATCAAGTAGGAGCATCAACAATTAGTCTTGTTCATCCTTTTTATCAATTAATTACCCCTGAATTAACAATCAGTGTTGTCCATTTGTCATTGTAATTTGGTTTCCTGAAACCTTTGAAGTCTGAACTCCATTTTGCATTTGCAGGAGTTCCTTGCTGGTATCCGCATGACTCTGGACTTATTTCAAAGTTCAAACTATGGGAACTGAAAACAAATAGCGTCTGGGAAGTGATGATAAGAGGTGCTGTCCTACACACCATGTAAATTATCCACCTCAGTGGTTCAATCCCATTGTTCGTGCTGTATGACTCTAGTAATGAGCTGGGTTTTCAGCATATTTTGTGGTTCAATTCTAGTCACATTTGAGAAGATCACTAGGCACGCTCGTCTGATTATATTGGTGCTATGGAGCACTACCATTTGCTGTGGAATACAGACAATTCTTATGCGGTTGGTTGTATGGCAATTGCTCGCCTATTCAAAGGGATTTTT]




>consensus_9930#2
TCTGTCAGAGTGGGAAACGATATTAACTCTTTCACCCAAGCCGGTAGGTTAGCATCGTTA
ATTTATAGCAAGGCCAACAATCCAATATGACGTCCAAGAGCATGGACATATTTAAGTGAC
ATTCATCAGTAAGCAGTTTACATTACTGGAATGAGATTTGGTAACTATATGTGCGTGATC
ACCTCATTTACATTTTGGAGTGTCCTATTTCAAATCAAGTAGGAGCATCAACAATTAGTC
TTGTTCATCCTTTTTATCAATTAATTACCCCTGAATTAACAATCAGTGTTGTCCATTTGT
CATTGTAATTTGGTTTCCTGAAACCTTTGAAGTCTGAACTCCATTTTGCATTTGCAGGAG
TTCCTTGCTGGTATCCGCATGACTCTGGACTTATTTCAAAGTTCAAACTATGGGAACTGA
AAACAAATAGCGTCTGGGAAGTGATGATAAGAGGTGCTGTCCTACACACCATGTAAATTA
TCCACCTCAGTGGTTCAATCCCATTGTTCGTGCTGTATGACTCTAGTAATGAGCTGGGTT
TTCAGCATATTTTGTGGTTCAATTCTAGTCACATTTGAGAAGATCACTAGGCACGCTCGT
CTGATTATATTGGTGCTATGGAGCACTACCATTTGCTGTGGAATACAGACAATTCTTATG
CGGTTGGTTGTATGGCAATTGCTCGCCTATTCAAAGGGATTTTT

consensusID : consensus_9930#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [GCGGAGGCCGCGACTTCGTCAAGCTGGAGGCTAGGGAGAGGGAGTCGGTGAGGAAATTCTTGCAGGAGAGGGAGGTGGATGACGAGCTTGCCGAGTTCTTGCACGACTACATGGCGAACAAGGAAAAGATGGAGCTTCTCCGGTGGTTGAAGACTGTCGAATCATTCGTCGAGAAGTAGGCACAGGAGAAGCAGATAAATCAGGGAATCCAATCCCTTGGTTGGCTTGGCTTGGCTTGGCTCCACGCTTTCGAGAAGAAGCACACAGACAAAATCACAGATACTAGTTCTTAACTCTTTGAGTGACCGAGCTCGAGCTAAAACCCTACTACAGTTAATGACTGAACCTGTTTTCCTCCGCAATGCTTGTTGTAGTAAAGAAATGGTGAGNGAGGAGTTCCTTGCTGGTATCCGCATGACTCTGGACTTATTTCAAAGTTCAAACTATGGGAACTGAAAACAAATAGCGNTCTGGGAAGTGATGATAAGAGCTGCTGTCCTACACACCATGTAAATTATCCACCTCAGTGGTTCAATCCCATTGTTCGTGCTGTATGACTCTAGCAATGAGCCTGGG]

[+] EMBL CF312653             [GCGGAGGCCGCGACTTCGTCAAGCTGGAGGCTAGGGAGAGGGAGTCGGTGAGGAAATTCTTGCAGGAGAGGGAGGTGGATGACGAGCTTGCCGAGTTCTTGCACGACTACATGGCGAACAAGGAAAAGATGGAGCTTCTCCGGTGGTTGAAGACTGTCGAATCATTCGTCGAGAAGTAGGCACAGGAGAAGCAGATAAATCAGGGAATCCAATCCCTTGGTTGGCTTGGCTTGGCTTGGCTCCACGCTTTCGAGAAGAAGCACACAGACAAAATCACAGATACTAGTTCTTAACTCTTTGAGTGACCGAGCTCGAGCTAAAACCCTACTACAGTTAATGACTGAACCTGTTTTCCTCCGCAATGCTTGTTGTAGTAAAGAAATGGTGAGNGAGGAGTTCCTTGCTGGTATCCGCATGACTCTGGACTTATTTCAAAGTTCAAACTATGGGAACTGAAAACAAATAGCGNTCTGGGAAGTGATGATAAGAGCTGCTGTCCTACACACCATGTAAATTATCCACCTCAGTGGTTCAATCCCATTGTTCGTGCTGTATGACTCTAGCAATGAGCCTGGG]




>consensus_9930#3
GCGGAGGCCGCGACTTCGTCAAGCTGGAGGCTAGGGAGAGGGAGTCGGTGAGGAAATTCT
TGCAGGAGAGGGAGGTGGATGACGAGCTTGCCGAGTTCTTGCACGACTACATGGCGAACA
AGGAAAAGATGGAGCTTCTCCGGTGGTTGAAGACTGTCGAATCATTCGTCGAGAAGTAGG
CACAGGAGAAGCAGATAAATCAGGGAATCCAATCCCTTGGTTGGCTTGGCTTGGCTTGGC
TCCACGCTTTCGAGAAGAAGCACACAGACAAAATCACAGATACTAGTTCTTAACTCTTTG
AGTGACCGAGCTCGAGCTAAAACCCTACTACAGTTAATGACTGAACCTGTTTTCCTCCGC
AATGCTTGTTGTAGTAAAGAAATGGTGAGNGAGGAGTTCCTTGCTGGTATCCGCATGACT
CTGGACTTATTTCAAAGTTCAAACTATGGGAACTGAAAACAAATAGCGNTCTGGGAAGTG
ATGATAAGAGCTGCTGTCCTACACACCATGTAAATTATCCACCTCAGTGGTTCAATCCCA
TTGTTCGTGCTGTATGACTCTAGCAATGAGCCTGGG

consensusID : consensus_9930#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [GGNACGAGGAATATTTNNTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCCTCAAGGACACTGCTTGTATGACTCTANTAATGAGCTGGGTTTTCAGCATATTCTGTGGTTCAATTCTAGTCACATTTGANAANATCACTAGGCACGCTCGTCTGATTATATTGGTGCTATGGANCACTACCATTTGCTGTGGAATACAGACAATTCTTATGCGGTTGGTTGTATGGCAATTGCTCGCCTATTCA]

[+] EMBL AA751605             [GGNACGAGGAATATTTNNTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCCTCAAGGACACTGCTTGTATGACTCTANTAATGAGCTGGGTTTTCAGCATATTCTGTGGTTCAATTCTAGTCACATTTGANAANATCACTAGGCACGCTCGTCTGATTATATTGGTGCTATGGANCACTACCATTTGCTGTGGAATACAGACAATTCTTATGCGGTTGGTTGTATGGCAATTGCTCGCCTATTCA]




>consensus_9930#4
GGNACGAGGAATATTTNNTACTATCTGTCTGGATTCATGTTCTTTGAGGCAGTGCCTCAA
GGACACTGCTTGTATGACTCTANTAATGAGCTGGGTTTTCAGCATATTCTGTGGTTCAAT
TCTAGTCACATTTGANAANATCACTAGGCACGCTCGTCTGATTATATTGGTGCTATGGAN
CACTACCATTTGCTGTGGAATACAGACAATTCTTATGCGGTTGGTTGTATGGCAATTGCT
CGCCTATTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9930#2      ------------------------------------------------------------
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      CGCAGAGGCAAAAGCTCGAACACATGGCGCGCGCCCTAGTCCGCCGGGCTCTCTCCCTCG 60
consensus_9930#3      ------------------------------------------------------------
consensus_9930#1      ------------------------------------------------------------
                                                                                  

consensus_9930#2      ------------------------------------------------------------
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      CCGCCGCGGCCTCCTCCCCGGCGAAACCATCCTTCTCCACCGTCGTCGCGCCGCTGCGCT 120
consensus_9930#3      ------------------------------------------------------------
consensus_9930#1      ------------------------------------------------------------
                                                                                  

consensus_9930#2      ------------------------------------------------------------
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      CCCCGATGGACGACCGCCTCCTCCGCCTCCTGCGCTCCGAGATCAACTACATCTCCGAAC 180
consensus_9930#3      ------------------------------------------------------------
consensus_9930#1      ------------------------------------CTCAGCCTTCCCGGCTTACCACCT 24
                                                                                  

consensus_9930#2      ------------------------------------------------------------
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      GCCGCCCTCCCTACCCGCCGCCGAAGGCCTTCAAATCGTTCGGGGTGGAGGACCGCCCGG 240
consensus_9930#3      ------------------------------------------------------------
consensus_9930#1      TTTCCCCACCTTCTTCCCTGCTTCCCCTCCTCTCCACCGTCAACAGCGGGCGTCGGT-GG 83
                                                                                  

consensus_9930#2      ------------------------------------------------------------
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      GGGAGCAGTGGGTGCGCCTCCGCGCCACCCGCGGCGCCCAGGACGAGGAGGTCAAGGTCG 300
consensus_9930#3      ------------------------------------------------------------
consensus_9930#1      CGGCCCCGTGGGTGCGCCTCCACGCCACCCGCAGCACCCAGGATGAGGAGGTCAAGGTCG 143
                                                                                  

consensus_9930#2      ---------------------------------------------------------TCT 3
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      ACGCCACCATGTTCGACGGCGCCGCCGCCCCGCCCCCAGACGCGCCCCTCTTCCGCCGCG 360
consensus_9930#3      -----------------------------GCGGAGGCCGCGACTTCGTCAAGCTGGAGGC 31
consensus_9930#1      ACGCCACCATGTTCGACGGCGCCGCCGTCCCGCCCCCAGACGCGCCCCTCTTCCGCCGCG 203
                                                                                  

consensus_9930#2      GTCAGAGTGGGAAACGATATTAACTCTTTCACCCAAGCCGGTAGGTTAGCATCGTTAATT 63
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      TCGAGTCGCTCGAGCGCGGCCCGCGCCTCCACCTCAGCCTCATCGTCGAGGTCTCCCGGG 420
consensus_9930#3      TAGGGAGAGGGAGTCGGTGAGGAAATTCTTGCAGGAGA-GGGAGGTGGATGACGAGCTTG 90
consensus_9930#1      TCGAGTCGCTCGACCACGTCCCGCGCCTCCACCTCGGCCTCATCATCGAGGCCTCTACCG 263
                                                                                  

consensus_9930#2      TATAGCAAGGCCAACAATCCAA-TATGACGTCCAAGAGCATGGACATATT-TAAGTGACA 121
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      CGGACCGCGTCCTCGGCTTCATCTGCTCCGCCTGGCACGACGAACTCGTCGTCCGCCACG 480
consensus_9930#3      CCGAGTTCTTGCACGACTACATGGCGAACAAGGAAAAGATGGAGCTTCTCCGGTGGTTGA 150
consensus_9930#1      CGACATGTTGCACCAGCACCA--GAAATCATGTTCAAGCTGGAGGCTAGGGAGAGGGAGT 321
                                                                                  

consensus_9930#2      TTCA---TCAGTAAGCAGTTTACA--TTACTGGAATGAGATTTGGTAACTATATGTGCGT 176
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      TCCTCACTCTCCGGGACGCCGATG--GCTCCAGCACCAGCAGCGGAGGCCGCGACTTCGT 538
consensus_9930#3      AGACTGTCGAATCATTCGTCGAGAAGTAGGCACAGGAGAAGCAGATAAATCAGGGAATCC 210
consensus_9930#1      ACGTGAGGAAATTCTTGCAGGAGAGGGCGGCGGCGGCAGCGGCGGCCGG-GCGAGGCGGC 380
                                                                                  

consensus_9930#2      GATCACCTCATTTACATT-TTGGAGTGTCCTATTTCAAATCAAGTAGGAGCATCAACAAT 235
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      CAAGCTGGAGGCTAGGGA-GAGGGAGTCGGTGAGGAAATTCTTGCAGGAGAGGGAGTGGA 597
consensus_9930#3      AATCCCTTGGTTGGCTTG-GCTTGGCTTGGCTCCACGCTTTCGAGAAGAAGCACACAGAC 269
consensus_9930#1      GCTCCCACGGGAGATTCACGACGAGATCGGCCTAGAGTTCCT--CGGCAACGTCACCGGC 438
                                                                                  

consensus_9930#2      TAGT---CTTGTTCATCCTTTTTATCAATTAATTACCCCTGAATTAACAATCAGTGTTGT 292
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      TGACGAGCTTGCCGAGTTCTTGCACGACTACATGGCGAACAAGGAAAAGATGGAGCTTCT 657
consensus_9930#3      AAAATCACAGATACTAGTTCTTAACTCTTTGAGTGACCGAGCTCGAGCTAAAACCCTACT 329
consensus_9930#1      AAGC-CATACACGCTCCACGCCAACATCTTCGCCAACGGCGTCGG-------------CA 484
                                                                                  

consensus_9930#2      CCATTTGTCATTGTAATTTGGTTTCCTGAAACCTTTGAAGTCTGAACTCCATTTTGCATT 352
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      CCGGTGGTTGAAGACTGTCGAATCATTCGTCGAGAAGTAGGCACAGGAGAAGCAGATAAA 717
consensus_9930#3      ACAGTTAATGACTGAACCTGTTTTCCTCCGCAATGCTTGTTGTAGTAAAGAAATGGTGAG 389
consensus_9930#1      GCCGCGAGCAGCAGTCGTCGCATCTCCTCCTGGTCGTGGTCCTCATCGTGCAC--ATCGT 542
                                                                                  

consensus_9930#2      TGCAGGAGTTCCTTGCTGGTATCCGCATGACTCTGGACTTATTTCAAAGTTCAAACTATG 412
consensus_9930#4      ------------------------------------------------------------
consensus_9930#0      T-CAGGAGTTCCTTGCTGGTATCCGCATGACTCTGGACTTATTTCAAAGTTCAAACTATG 776
consensus_9930#3      N-GAGGAGTTCCTTGCTGGTATCCGCATGACTCTGGACTTATTTCAAAGTTCAAACTATG 448
consensus_9930#1      CGCTCGGCTCCCTTGACGACGATGCCGTCGTTGCGTGCGT-CGTCAAGGCGGCGGCGAGC 601
                                                                                  

consensus_9930#2      GGAACTGAAAACAAATAGCGT-C-TGGGAAGTGATGATAAGAGGTGCTGTCCTACACACC 470
consensus_9930#4      --------------------------GGNACGAGGAATATTTNNTACTATCTGTCTGG-- 32
consensus_9930#0      GGAACTGAAAACAAATAGCGT-C-TGGGAAGTGATGATAAGAGCTGCTGTCCTACACACC 834
consensus_9930#3      GGAACTGAAAACAAATAGCGNTC-TGGGAAGTGATGATAAGAGCTGCTGTCCTACACACC 507
consensus_9930#1      GG----GCGAGCGGGCGGCGGCCATTTTCACTTTTTTTTTGTTTTTTTTCCGTGCGAGCG 657
                                                   *       *      *  *  *   *     

consensus_9930#2      ATGTAAATTATCCACCTCAGTG-GTTCAATCCCATTGTTCGTGCTGTATGACTCTAGTAA 529
consensus_9930#4      ATTCATGTTCTTTGAGGCAGTG-CCTCAAGGACACTGCT-----TGTATGACTCTANTAA 86
consensus_9930#0      ATGTAAATTATCCACCTCAGTG-GTTCAATCCCATTGTTCGTGCTGTATGACTCTAGCAA 893
consensus_9930#3      ATGTAAATTATCCACCTCAGTG-GTTCAATCCCATTGTTCGTGCTGTATGACTCTAGCAA 566
consensus_9930#1      GTATAATATGACCGCATCGGGATAATCGATTATCCCGTGCGGTCCATTATCCCATACGGT 717
                       *  *   *        * *     ** *       *         *    *  **    

consensus_9930#2      TGAGCTGGGTTTTCA-GCATATTTTGTGGTTCAATTCTAGTCACATTTGAGAAGATCACT 588
consensus_9930#4      TGAGCTGGGTTTTCA-GCATATTCTGTGGTTCAATTCTAGTCACATTTGANAANATCACT 145
consensus_9930#0      TGAGCTGGGTTTTCA-GCATATTCTGTGGTTCAATTCTAGTCACATTTGAGAAGATCACT 952
consensus_9930#3      TGAGCCTGGG-------------------------------------------------- 576
consensus_9930#1      TGGGCCGTCCGTACGCGAAAATATTGATTTTTTCAGACATTTGGGTATAGACGGGCAAAT 777
                      ** **                                                       

consensus_9930#2      AGGCACGCTCGTCTGATTATATTGGTGCTATGGAGCACTACCATTTGCTGTGGAATACAG 648
consensus_9930#4      AGGCACGCTCGTCTGATTATATTGGTGCTATGGANCACTACCATTTGCTGTGGAATACAG 205
consensus_9930#0      AGGCACGCTCGTCTGATTATATTGGTGCTATGGAGCACTACCATTTGCTGTGGAATACAG 1012
consensus_9930#3      ------------------------------------------------------------
consensus_9930#1      CCTCCGCACAGAAAAATCATTTTGACCGCAAGGAAAAATGGTTTTCGCAGTAACGAGAGA 837
                                                                                  

consensus_9930#2      ACAATTCTTATGCGGTTGGTTGTATGGCAATTGCTCGCCTATTCAAAGGGATTTTT---- 704
consensus_9930#4      ACAATTCTTATGCGGTTGGTTGTATGGCAATTGCTCGCCTATTCA--------------- 250
consensus_9930#0      ACAATTCTTATGCGGTTGGTTGTATGGCAATTGCTCGCCTATTCATTTTTATTTTAAACA 1072
consensus_9930#3      ------------------------------------------------------------
consensus_9930#1      CCGAAG------------------------------------------------------ 843
                                                                                  

consensus_9930#2      -----------------------------------
consensus_9930#4      -----------------------------------
consensus_9930#0      ATATAAGTAGATCTCCTACTGTGCTAAAAAAAAAA 1107
consensus_9930#3      -----------------------------------
consensus_9930#1      -----------------------------------