These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1259 fasta sequence [TCGTCTTCCAATCCTTCTTCCTCCTCCCTCCTCTCCTCTCCTCTCCTGCAGCAGCGCCCACCGCCATCGGAGCCTCGCCCTCGCGCGGCCATGCTTGGTCTGAGGGGAGCCAGGGCGGCGCAGCTCCCGTACGCTTCCGCCGCCGTCGCTCCCACCCCCACGCCCTCGTTTTCCGGCTTCGCGCGCCGCCTCCCGCTCCTCGCCTCCGCGGCCCTCTCGCCTCTGCCGCCCTCCTTCTCCTTCTCCTCCGCTTCCGCCGTCAGGAGGGATAGGGACCCTCCCATGCGTCCCGTCTCCGGCGCCCTCTCCAGGTCCAGGCCAACCACCAGGGTTTTCTGCTCTGCGGCTGCTACTGCTCCCAGGGAGGGCAAGGAGTTGCTTGTCCAGCATCTGCTCGTCGGCGAACAGGATGTCAGGCTTTTGGTCGATCTTGAAAAGAACATCATTACAGGAGGTGCAGACTTGAGCGATTTAGCTGTCGAGTACTCTTTATGCCCATCGAAAGAAAATGGTGGAATGCTGGGGTGGGTTCGAAGAGGACAGATGGTTCCAGAATTTGAGGAAGCAGCTTTCGGTGCTCCTTTGAACAAGGTTGTACGGTGTAAGACAAAATTTGGATGGCATTTGTTGCAAGTGCTTGCTGAGAGAGAACAATGCGTAGTGGAAGACATTCCACCAGAGGAGCTTCATGCAAAAATGCAAGATCCTAACTTTCTTGAAGAAGCTCAGTTGATTGATGTTCGGGAGCCTGATGAAGTAGATAAAGCTTCTCTTGAAGGGTTTAAAGTTCTACCTCTTCGACAGTTTGGAACTTGGGGACCAGTTATGACAGATGAATTTGATCCTCAGAAGGACACTTATGTTCTGTGCCACCATGGTATGCGCTCAATGCAGGTAGCTAAATGGCTGCAATCACAGGGGTTCAGAAAAGTTTACAATGTTGCGGGTGG-GATTCACGCTTATGCCGTTAAAGCCGATTCTTCCATCCCAACTTACTAGACATCTCCATGATCACCAATGCAACGTCAGAGCCTTTTCTACGTG-TTCG-TTTTTCAGG-CCAAACCAAAAGCATGCTTAGTATAGAATGATAGGATTTTCCACGATGATTTTGTA-CGGAATATCGGTA-CCAGAAATTCAGAGTTAAGTTTTGTCGTTCTCATGCTGCTGTCATGTACTAGCAGTTCTCTTGAAATTTTATATGGAGGATATATCACTTTTATTAGTTTGAATACA-AGGGAAATACCTGGGAGGAAAAAAAA] [+] EMBL AK073511 [TCGTCTTCCAATCCTTCTTCCTCCTCCCTCCTCTCCTCTCCTCTCCTGCAGCAGCGCCCACCGCCATCGGAGCCTCGCCCTCGCGCGGCCATGCTTGGTCTGAGGGGAGCCAGGGCGGCGCAGCTCCCGTACGCTTCCGCCGCCGTCGCTCCCACCCCCACGCCCTCGTTTTCCGGCTTCGCGCGCCGCCTCCCGCTCCTCGCCTCCGCGGCCCTCTCGCCTCTGCCGCCCTCCTTCTCCTTCTCCTCCGCTTCCGCCGTCAGGAGGGATAGGGACCCTCCCATGCGTCCCGTCTCCGGCGCCCTCTCCAGGTCCAGGCCAACCACCAGGGTTTTCTGCTCTGCGGCTGCTACTGCTCCCAGGGAGGGCAAGGAGTTGCTTGTCCAGCATCTGCTCGTCGGCGAACAGGATGTCAGGCTTTTGGTCGATCTTGAAAAGAACATCATTACAGGAGGTGCAGACTTGAGCGATTTAGCTGTCGAGTACTCTTTATGCCCATCGAAAGAAAATGGTGGAATGCTGGGGTGGGTTCGAAGAGGACAGATGGTTCCAGAATTTGAGGAAGCAGCTTTCGGTGCTCCTTTGAACAAGGTTGTACGGTGTAAGACAAAATTTGGATGGCA TTGTTGCAAGTGCTTGCTGAGAGAGAACAATGCGTAGTGGAAGACATTCCACCAGAGGAGCTTCATGCAAAAATGCAAGATCCTAACTTTCTTGAAGAAGCTCAGTTGATTGATGTTCGGGAGCCTGATGAAGTAGATAAAGCTTCTCTTGAAGGGTTTAAAGTTCTACCTCTTCGACAGTTTGGAACTTGGGGACCAGTTATGACAGATGAATTTGATCCTCAGAAGGACACTTATGTTCTGTGCCACCATGGTATGCGCTCAATGCAGGTAGCTAAATGGCTGCAATCACAGGGGTTCAGAAAAGTTTACAATGTTGCGGGTGG GATTCACGCTTATGCCGTTAAAGCCGATTCTTCCATCCCAACTTACTAGACATCTCCATGATCACCAATGCAACGTCAGAGCCTTTTCTACGTG TTCG TTTTTCAGG CCAAACCAAAAGCATGCTTAGTATAGAATGATAGGATTTTCCACGATGATTTTGTA CGGAATATCGGTA CCAGAAATTCAGAGTTAAGTTTTGTCGTTCTCATGCTGCTGTCATGTACTAGCAGTTCTCTTGAAATTTTATATGGAGGATATATCACTTTTATTAGTTTGAATACA AGGGAAAT ] [+] EMBL CK085212 [ CGCCATCGGAGCCTCGCCCTCGCGCGGCCATGCTTGGTCTGAGGGGAGCCAGGGCGGCGCAGCTCCCGTACGCTTCCGCCGCCGTCGCTCCCACCCCCACGCCCTCGTTTTCCGGCTTCGCGCGCCGCCTCCCGCTCCTCGCCTCCGCGGCCCTCTCGCCTCTGCCGCCCTCCTTCTCCTTCTCCTCCGCTTCCGCCGTCAGGAGGGATAGGGACCCTCCCATGCGTCCCGTCTCCGGCGCCCTCTCCAGGTCCAGGCCAACCACCAGGGTTTTCTGCTCTGCGGCTGCTACTGCTCCCAGGGAGGGCAAGGAGTTGCTTGTCCAGCATCTGCTCGTCGGCGAACAGGATGTCAGGCTTTTGGTCGATCTTGAAAAGAACATCATTACAGGAGGTGCAGACTTGAGCGATTTAGCTGTCGAGTACTCTTTATGCCCATCGAAAGAAAATGGTGGAATGCTGGGGTGGGTTCGAAGAGGACAGATGGTTCCAGAATTTGAGGAAGCAGCTTTCGGTGCTCCTTTGAACAAGGTTGTACGGTGTAAGACAAAATTTGGATGGCATTTGTTGCAAGTGCTTGCTGAGAGAGAACAATGCGTAGTGGAAGACATTCCACCAGAGGAGC ] [+] EMBL CF303600 [ GGCCCTCTCGCCTCTGCCGCCCTCCTTCTCCTTCTCCTCCGCTTCCGCCGTCAGGAGGGATAGGGACCCTCCCATGCGTCCCGTCTCCGGCGCCCTCTCCAGGTCCAGGCCAACCACCAGGGTTTTCTGCTCTGCGGCTGCTACTGCTCCCAGGGAGGGCAAGGAGTTGCTTGTCCAGCATCTGCTCGTCGGCGAACAGGATGTCAGGCTTTTGGTCGATCTTGAAAAGAACATCATTACAGGAGGTGCAGACTTGAGCGATTTAGCTGTCGAGTACTCTTTATGCCCATCGAAAGAAAATGGTGGAATGCTGGGGTGGGTTCGAAGAGGACAGATGGTTCCAGAATTTGAGGAAGCAGCTTTCGGTGCTCCTTTGAACAAGGTTGTACGGTGTAAGACAAAATTTGGATGGCATTTGTTGCAAGTGCTTGCTGAGAGAGAACAATGCGTAGTGGAAGACATTCCACCAGAGGAGCTTCATGCAAAAATGCAAGATCCTAACTTTCTTGAAGAAGCTCAGTTGATTGATGTTCGGGAGC ] [+] EMBL OSC09241 [ TGCGTAGTGGAAGACATTCCACCAGAGGAGCTTCATGCAAAAATGCAAGATCCTAACTTTCTTGAAGAAGCTCAGTTGATTGATGTTCGGGAGCCTGATGAAGTAGATAAAGCTTCTCTTGAAGGGTTTAAAGTTCTACCTCTTCGACAGTTTGGAACTTGGGGACCAGTTATGACAGATGAATTTGATCCTCAGAAGGACACTTATGTTCTGTGCCACCATGGTATGCGCTCAATGCAGGTAGCTAAATGGCTGCAATCACAGGGGTTCAGAAAAGTTTACAATGTTGCGGGTGGNGATTCACGCTTAT ] [+] EMBL AK103992 [ TGGAAGACATTCCACCAGAGGAGCTTCATGCAAAAATGCAAGATCCTAACTTTCTTGAAGAAGCTCAGTTGATTGATGTTCGGGAGCCTGATGAAGTAGATAAAGCTTCTCTTGAAGGGTTTAAAGTTCTACCTCTTCGACAGTTTGGAACTTGGGGACCAGTTATGACAGATGAATTTGATCCTCAGAAGGACACTTATGTTCTGTGCCACCATGGTATGCGCTCAATGCAGGTAGCTAAATGGCTGCAATCACAGGGGTTCAGAAAAGTTTACAATGTTGCGGGTGG GATTCACGCTTATGCCGTTAAAGCCGATTCTTCCATCCCAACTTACTAGACATCTCCATGATCACCAATGCAACGTCAGAGCCTTTTCTACGTG TTCG TTTTTCAGG CCAAACCAAAAGCATGCTTAGTATAGAATGATAGGATTTTCCACGATGATTTTGTA CGGAATATCGGTA CCAGAAATTCAGAGTTAAGTTTTGTCGTTCTCATGCTGCTGTCATGTACTAGCAGTTCTCTTGAAATTTTATATGGAGGATATATCACTTTTATTAGTTTGAATACA AGGGAAAT ] [+] EMBL C98171 [ CCCAACTTNCTAGACATCTCCATGATCACCAATGCAACNTCAGAGCCTTTTCTACGTG TTCG TTTTTCAGG CCAAACNAAAAGCATGCTTAGTATAGAATGATAGGATTNTCCACGATGATTTTGTA CGGAATATCGGTA CCAGAAATTCAGAGTTAAGTTTTGTCGTTCTCATGCTGCTGTCATGTACTAGCAGTNCTCTTGAAATTTTATATGGAGGATATATCACTTTTATTAGTTTGAAAAAA Aaa ] [+] EMBL BI799512 [ acCCAATGCAACGTCAGAGCCTTTTCTACGTGCTTCGCTTTTTCAGGCCCATACCCAAAGCATGCTTAGTATAGAATGATAGGATTTTCCCCGATGATTTTGTACCGGAATATCGGTACCCAGAAATTCAGAGTTAAGTTTTGTCGTTCTCATGCTCCTGTCATGTACTA CCGTTCTCTTGAAATTTTATATGGAGGATATATCCCTTTTATTAGTTTGAATACACAGGGAAATACCTGGGAGGAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||