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Oryza sativa
cluster # 9933 cluster # 9933       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9933#0 length = 821 sequences # 6  
consensus_9933#1 length = 419 sequences # 1  

consensusID : consensus_9933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 821
fasta sequence
                              [GTTTTTTTTTGAGCCAGCTCAGGATGTTCGAAATTCATCGAGAATGTGAACTCTGAACAGAAGAATCCCCACAAACGTGCAGTCATTTTCAATGACAACGGGGTTTTTACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCGCATTTTTGCCACGGATCTCAATAG-CAGCAATGTCGTAAGCCTCCGCTGCTTCTT-CCTCAGTTTTGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACCTCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAATAGAAGCCCCTCTTGAGAAGCAGCTACTTCTTCTTCTTAGGTATGTTACGCATTCCTCTCGAGACATGTCCCTTATGTCCTCCAGTTCCCTTTCGTATTCTGAAACCGAGAAATTCAGCTTTGTATTTTGGCCCCAGTATTTAAGAGCTGCAACATCATATGACCTGGCAGCTTTTTCCTCGGTATCA]

[+] EMBL CF303426             [GTTTTTTTTTGAGCCAGCTCAGGATGTTCGAAATTCATCGAGAATGTGAACTCTGAACAGAAGAATCCCCACAAACGTGCAGTCATTTTCAATGACAACGGGGAACATACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCGCATTTTTGCCACGGATCTCAATAG CAGCAATGTCGTAAGCCTCCGCTGCTTCTT CCTCAGTTTTGAAAGTTCCCAGG                                                                                                                                                                                                                                                                              ]
[+] EMBL CF293914             [                                                                                                       TTTTT   ATCTGGAATGATAGGTTTTATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCGCATTTTTGCCACGGATCTCAATAG CAGCAAT                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA765402             [                                                                                                       TTTTNACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGAT                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF276984             [                                                                                                      tTTTTTAC ATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL BI797344             [                                                                                                            ttttttTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATT ACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGG TCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCG ATTTTTGCCACGGATCTCAATAG CAGCAATGTCGTAAGCCTCCGCTGCTTCTT CCTCAGTTTTGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACCTCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAAT                                                                                                                                                                                           ]
[-] EMBL AU078642             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tcCAATAGCCAGCAATGTCGTAAGCCTCCGCTGCNTCTTCCCTCAGTTTTGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACCTCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAATAGAAGCCCCTCTTGAGAAGCAGCTACTTCTTCTTCTTAGGTATGTTACGCATTCCTCTCGAGACATGTCCCTTATGTCCTCCAGTTCCCTTTCGTATTCTGAAACCGAGAAATTCAGCTTTGTATTTTGGCCCCAGTATTTAAGAGCTGCAACATCATATGACCTGGCAGCTTTTTCCTCGGTATCA]


>consensus_9933#0 GTTTTTTTTTGAGCCAGCTCAGGATGTTCGAAATTCATCGAGAATGTGAACTCTGAACAG AAGAATCCCCACAAACGTGCAGTCATTTTCAATGACAACGGGGTTTTTACAATCTGGAAT GATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACC CTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAAT CGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGT TGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCG GCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTT CTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCGCATTTT TGCCACGGATCTCAATAGCAGCAATGTCGTAAGCCTCCGCTGCTTCTTCCTCAGTTTTGA AAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACCTCC CATCTTTCTGCCTTCTAGTAACTCCTCTATAAATAGAAGCCCCTCTTGAGAAGCAGCTAC TTCTTCTTCTTAGGTATGTTACGCATTCCTCTCGAGACATGTCCCTTATGTCCTCCAGTT CCCTTTCGTATTCTGAAACCGAGAAATTCAGCTTTGTATTTTGGCCCCAGTATTTAAGAG CTGCAACATCATATGACCTGGCAGCTTTTTCCTCGGTATCA



consensusID : consensus_9933#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence
                              [TTTTTTTTNTTTTTTACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGNATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGNTTTCATTCTGGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCANGTAGGTTGCTTCGATCAAAGTTGGTCACCGNATTTTTGCCACGGATNTCAATAGCAGCAATGGTCG]

[-] EMBL AU078643             [TTTTTTTTNTTTTTTACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGNATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGNTTTCATTCTGGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCANGTAGGTTGCTTCGATCAAAGTTGGTCACCGNATTTTTGCCACGGATNTCAATAGCAGCAATGGTCG]


>consensus_9933#1 TTTTTTTTNTTTTTTACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGA GTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTT CTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACG CAGAGATATTAACAAGCTGCAACCAGTTGTATCTGNATGTACCACTAAGCTCCAAATATG ACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGNTTTCATTCTGGGCTTA GACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCANGTAGGTT GCTTCGATCAAAGTTGGTCACCGNATTTTTGCCACGGATNTCAATAGCAGCAATGGTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9933#0      GTTTTTTTTTGAGCCAGCTCAGGATGTTCGAAATTCATCGAGAATGTGAACTCTGAACAG 60
consensus_9933#1      ------------------------------------------------------------
                                                                                  

consensus_9933#0      AAGAATCCCCACAAACGTGCAGTCATTTTCAATGACAACGGGGTTTTTACAATCTGGAAT 120
consensus_9933#1      -------------------------TTTTTTTTN--------TTTTTTACAATCTGGAAT 27
                                               ****   *          *****************

consensus_9933#0      GATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACC 180
consensus_9933#1      GATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACC 87
                      ************************************************************

consensus_9933#0      CTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAAT 240
consensus_9933#1      CTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAAT 147
                      ************************************************************

consensus_9933#0      CGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGT 300
consensus_9933#1      CGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGT 207
                      ************************************************************

consensus_9933#0      TGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCG 360
consensus_9933#1      TGTATCTGNATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCG 267
                      ******** ***************************************************

consensus_9933#0      GCTCCACCAAGTCAAGTTTTCATTCTGG-CTTAGACGCAAGCAGCTTCAAGCCTGCCCCT 419
consensus_9933#1      GCTCCACCAAGTCAAGNTTTCATTCTGGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCT 327
                      **************** *********** *******************************

consensus_9933#0      TCTATACAGTGCATACCCTTCTCCATGTAG-TTGCTTCGATCAAAGTTGGTCACCGCATT 478
consensus_9933#1      TCTATACAGTGCATACCCTTCTCCANGTAGGTTGCTTCGATCAAAGTTGGTCACCGNATT 387
                      ************************* **** ************************* ***

consensus_9933#0      TTTGCCACGGATCTCAATAGCAGCAATG-TCGTAAGCCTCCGCTGCTTCTTCCTCAGTTT 537
consensus_9933#1      TTTGCCACGGATNTCAATAGCAGCAATGGTCG---------------------------- 419
                      ************ *************** ***                            

consensus_9933#0      TGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACC 597
consensus_9933#1      ------------------------------------------------------------
                                                                                  

consensus_9933#0      TCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAATAGAAGCCCCTCTTGAGAAGCAGC 657
consensus_9933#1      ------------------------------------------------------------
                                                                                  

consensus_9933#0      TACTTCTTCTTCTTAGGTATGTTACGCATTCCTCTCGAGACATGTCCCTTATGTCCTCCA 717
consensus_9933#1      ------------------------------------------------------------
                                                                                  

consensus_9933#0      GTTCCCTTTCGTATTCTGAAACCGAGAAATTCAGCTTTGTATTTTGGCCCCAGTATTTAA 777
consensus_9933#1      ------------------------------------------------------------
                                                                                  

consensus_9933#0      GAGCTGCAACATCATATGACCTGGCAGCTTTTTCCTCGGTATCA 821
consensus_9933#1      --------------------------------------------
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)