These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 821 fasta sequence [GTTTTTTTTTGAGCCAGCTCAGGATGTTCGAAATTCATCGAGAATGTGAACTCTGAACAGAAGAATCCCCACAAACGTGCAGTCATTTTCAATGACAACGGGGTTTTTACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCGCATTTTTGCCACGGATCTCAATAG-CAGCAATGTCGTAAGCCTCCGCTGCTTCTT-CCTCAGTTTTGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACCTCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAATAGAAGCCCCTCTTGAGAAGCAGCTACTTCTTCTTCTTAGGTATGTTACGCATTCCTCTCGAGACATGTCCCTTATGTCCTCCAGTTCCCTTTCGTATTCTGAAACCGAGAAATTCAGCTTTGTATTTTGGCCCCAGTATTTAAGAGCTGCAACATCATATGACCTGGCAGCTTTTTCCTCGGTATCA] [+] EMBL CF303426 [GTTTTTTTTTGAGCCAGCTCAGGATGTTCGAAATTCATCGAGAATGTGAACTCTGAACAGAAGAATCCCCACAAACGTGCAGTCATTTTCAATGACAACGGGGAACATACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCGCATTTTTGCCACGGATCTCAATAG CAGCAATGTCGTAAGCCTCCGCTGCTTCTT CCTCAGTTTTGAAAGTTCCCAGG ] [+] EMBL CF293914 [ TTTTT ATCTGGAATGATAGGTTTTATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCGCATTTTTGCCACGGATCTCAATAG CAGCAAT ] [-] EMBL CA765402 [ TTTTNACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGAT ] [+] EMBL CF276984 [ tTTTTTAC ATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTA ] [-] EMBL BI797344 [ ttttttTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATT ACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGG TCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCG ATTTTTGCCACGGATCTCAATAG CAGCAATGTCGTAAGCCTCCGCTGCTTCTT CCTCAGTTTTGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACCTCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAAT ] [-] EMBL AU078642 [ tcCAATAGCCAGCAATGTCGTAAGCCTCCGCTGCNTCTTCCCTCAGTTTTGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACCTCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAATAGAAGCCCCTCTTGAGAAGCAGCTACTTCTTCTTCTTAGGTATGTTACGCATTCCTCTCGAGACATGTCCCTTATGTCCTCCAGTTCCCTTTCGTATTCTGAAACCGAGAAATTCAGCTTTGTATTTTGGCCCCAGTATTTAAGAGCTGCAACATCATATGACCTGGCAGCTTTTTCCTCGGTATCA] consensusID : consensus_9933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [TTTTTTTTNTTTTTTACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGNATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGNTTTCATTCTGGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCANGTAGGTTGCTTCGATCAAAGTTGGTCACCGNATTTTTGCCACGGATNTCAATAGCAGCAATGGTCG] [-] EMBL AU078643 [TTTTTTTTNTTTTTTACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGNATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGNTTTCATTCTGGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCANGTAGGTTGCTTCGATCAAAGTTGGTCACCGNATTTTTGCCACGGATNTCAATAGCAGCAATGGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9933#0 GTTTTTTTTTGAGCCAGCTCAGGATGTTCGAAATTCATCGAGAATGTGAACTCTGAACAG 60 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 AAGAATCCCCACAAACGTGCAGTCATTTTCAATGACAACGGGGTTTTTACAATCTGGAAT 120 consensus_9933#1 -------------------------TTTTTTTTN--------TTTTTTACAATCTGGAAT 27 **** * ***************** consensus_9933#0 GATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACC 180 consensus_9933#1 GATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACC 87 ************************************************************ consensus_9933#0 CTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAAT 240 consensus_9933#1 CTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAAT 147 ************************************************************ consensus_9933#0 CGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGT 300 consensus_9933#1 CGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGT 207 ************************************************************ consensus_9933#0 TGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCG 360 consensus_9933#1 TGTATCTGNATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCG 267 ******** *************************************************** consensus_9933#0 GCTCCACCAAGTCAAGTTTTCATTCTGG-CTTAGACGCAAGCAGCTTCAAGCCTGCCCCT 419 consensus_9933#1 GCTCCACCAAGTCAAGNTTTCATTCTGGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCT 327 **************** *********** ******************************* consensus_9933#0 TCTATACAGTGCATACCCTTCTCCATGTAG-TTGCTTCGATCAAAGTTGGTCACCGCATT 478 consensus_9933#1 TCTATACAGTGCATACCCTTCTCCANGTAGGTTGCTTCGATCAAAGTTGGTCACCGNATT 387 ************************* **** ************************* *** consensus_9933#0 TTTGCCACGGATCTCAATAGCAGCAATG-TCGTAAGCCTCCGCTGCTTCTTCCTCAGTTT 537 consensus_9933#1 TTTGCCACGGATNTCAATAGCAGCAATGGTCG---------------------------- 419 ************ *************** *** consensus_9933#0 TGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACC 597 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 TCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAATAGAAGCCCCTCTTGAGAAGCAGC 657 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 TACTTCTTCTTCTTAGGTATGTTACGCATTCCTCTCGAGACATGTCCCTTATGTCCTCCA 717 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 GTTCCCTTTCGTATTCTGAAACCGAGAAATTCAGCTTTGTATTTTGGCCCCAGTATTTAA 777 consensus_9933#1 ------------------------------------------------------------ consensus_9933#0 GAGCTGCAACATCATATGACCTGGCAGCTTTTTCCTCGGTATCA 821 consensus_9933#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||