cluster # 9941

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Oryza sativa
cluster # 9941 cluster # 9941 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9941#0 length = 819 sequences # 6

consensus_9941#1 length = 250 sequences # 1

consensusID : consensus_9941#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 819
fasta sequence

                              [TCCTTTTTTTTTTTTTTTTTTTTTAAAACAATGGCAATT-CTCTACTCTTTATTTGCATGGTTACTTCAACTGCTTGCCCTATTAACAACCTGAGGTGTGTGTTCTTCAGTAATGTGATCCATTATATACATGGTTATATAACTACACAAGTAAGGTGACAACATGGATCTGCTGGATGGCTACTGCTTCT-----ACATAACCACTATATGCACTGACAAGCAGGTTGGATCATTAAAACAACAATCTGGAATTCCAGTACCCCATGGATCAAAAACTCCTTGGAGCAGTTGAATGCTTGGTCCATCTGCGTAAGTGAATGAAAGAATGTGTCTCACTCTCGCTTGCCAGGGGCAGCAGGGCTCAAAAACATTTCGATTTCCTCAAGAAAACGTCCTTTCGTCTCGACAATGAAATTGTAGGCGAAAAGTGCTGACAACAAGGATACTCCACCAAAACCTGCATAGACGGCTCCAACGCCTAACTTCTTCGCAAGCTCCAGGAAATACAGTCCCACCAGAAAATTGCATATCCAATGTACAGTGAAGCTGAAGCCCATAACTTTCGAGCGTGTCCGAGCACCACTCAGCTCTGGTATGATGATTCCTGTAACTGGTCCGGCTCCAATGGCGAATGTAAATATGTACAACAGAGTTCCAGTAATTGACAGGCCATGGCTAACTCCTTCATCAAGGGGGAAGCTAATGGCATATACTATTAGGAACATTGCAAGTGCTATTCCAAGATAGCTTCCTGTCAAGAGTTTCTTTCGACCTTG-CTTATCCATCAAAATTGAAGCAACAATTGNCCCCTGCAAAATTAGTT]

[+] EMBL CB680834             [TCCTTTTTTTTTTTTTTTTTTTTTAAAACAATGGCAATT CTCTACTCTTTATTTGCATGGTTACTTCAACTGCTTGCCCTATTAACAACCTGAGGTGTGTGTTCTTCAGTAATGTGATCCATTATATACATGGTTATATAACTACACAAGTAAGGTGACAACATGGATCTGCTGGATGGCTACTGCTTCT     ACATAACCACTATATGCACTGACAAGCAGGTTGGATCATTAAAACAACAATCTGGAATTCCAGTACCCCATGGATCAAAAACTCCTTGGAGCAGTTGAATGCTTGGTCCATCTGCGTAAGTGAATGAAAAAATGTGTCTCACTCTCGCTTGCCAGGGGCAGCAGGGCTCAAAAACATTTCGATTTCCTCAAGAAAACGTCCTTTCGTCTCGACAATGAAATTGTAGGCGAAAAGTGCTGACAACAAGGATACTCCACCAAAACCTGCATAGACGGCTCCAACGCCTAACTTCTTCGCAAGCTCCAGGAAATACAGTCCCACCAAAAAATTGCATATCCAATGTACAGTGAAGCTGAAGCCCATAACTTTCGAGCGTGTCCGAGCACCACTCAGCTCTGGTATGATGATTCCTGTAACTGGTCCGGCTCCAATGGCGAATGTAAATATGTACAACAGAGTTCCAGTAATTGACAGGCCATGGCTAACTCCTTCATCAAGGGGGAAGCTAATGGCATATACTATTAGGAACATTGCAAGTGCTATTCCAAGATAGCTTCCTGTCAAGAGTTTCTTTCGACCTTG CTTAT                                          ]
[+] EMBL CB665434             [                         AAACAATGGCAATT CTCTACTCTTTATTTGCCTGGTTACTTCAACTGCTTGCCCTATTAACAACCTGAGGTGTGTGTTCTTCAGTAATGTGATCCATTATATACATGGTTATATAACTACACAAGTAAGGTGACAACATGGATCTGCTGGATGGCTACTGCTTCT     ACATAACCACTATATGCACTGACAAGCAGGTTGGATCATTAAAACAACAATCTGGAATTCCAGTACCCCATGGATCAAAAACTCCTTGGAGCAGTTGAATGCTTGGTCCATCTGCGTAAGTGAATGAAAGAATGTGTCTCACTCTCGCTTGCCAGGGGCAGCAGGGCTCAGAGACATTTCGATTTCCTCAAGAGAACGTCCTTTCGTCTCGACAATGAAATTGTAGGCGAAAAGTGCTGACAACAAGGATACTCCACCAAAACCTGCATAGACGGCTCCAACGCCTAACTTCTTCGCAAGCTCCAGGAAATACAGTCCCACCAGAAAATTGCATATCCAATGTACAGTGAAGCTGAAGCCCATAACTTTCGAGCGTGTCCGAGCACCACTCAGCTCTGGTATGATGATTCCTGTAACTGGTCCGGCTCCAATGGCGAATGTAAATATGTACAACAGAGTTCCAGTAATTGACAGGCCATGGCTAACTCCTTCATCAAGGGGGAAGCTAATGGCATATACTATTAGGAACATTGCAAGTGCCATTCCAAGATAGCTTCCTGTCAAGAGTTTCTTTCGACCTTG CTTATCCATCAAAATTGAAGCAACAATTGNCCCCTGCAAAATTAGTT]
[+] EMBL CB652641             [                            CAATGGGAATT CCCTTTAAGGTATTTGCATGGTTACTTCAACTGCTTGCCCTATTAACAACCTGAGGGGGGTGTTCTTCAGTAATGTGATCCATTATATACATGGTTATATAACTACACAAGTAAGGGGACAACATGGATCTGCTGGATGGCTACTGCTTCT     ACATAACCACTATATGCACTGACAAGCAGGTTGGATCATTAAAACAACAATCTGGAATTCCAGTACCCCATGGATCAAAAACTCCTTGGAGCAGTTGAATGCTTGGTCCATCTGCGTAAGTGAATGAAAAAATGTGTCTCACTCTCCCTTGCCAGGGGCAGCAGGGCTCAAAAACATTTCGATTTCCTCAAAAAAACGTCCTTTCGTCTCGACAATGAAATTGTAGGCGAAAAGTGCTGACAACAAGGATACTCCACCAAAACCTGCATAGACGGCTCCAACGCCTAACTTCTTCGCAAGCTCCAAGAAATACAGTCCCACCAAAAAATTGCATATCCAATGTACAGTGAAGCTGAAGCCCATAACTTTCGAGCGTGTCCGAACACCACTCAGCTCTGGTATGATGATTCCTGTAACTGGTCCGGCTCCAATGGCGAATGTAAATATGTACAACAGAGTTCCAGTAATTGACAGGCCATGGCTAACTCCTTCATCAAGGGGGAAGCTAATGGCATAT                                                                                                                 ]
[+] EMBL CB673789             [                                  CAATTCCTCTACTCTTTATTTGCATGGTTACTTCATCTGCTTGCCCTATTAACAGCCTGAGGTGTGTGTTCTTCAGTAATGTGATCCATTATATACATGGTTATATAACTACACAAGTAAGGTGACAACATGGATCTGCTGGATGGCTACTACTTCTACATAACATAACCACTATATGCACTGACAAGCAGGTTGGATCATTAAAACAACAATCTGGAATTCCAGTACCCCATGGATAAAAAACTCCTTGGAGTGGTTGAATGCTTGATCCATCTGCGTAAGTGAATGAAAGAATGTGTCTCACTCTCGCTTGCCAGGGGCAGCAGGGCTCAAAAACATTTCGATTTCCTCAAGAAAACGTCCTTTCGTCTCGACAATGAAATTGTAGGCGAAAAGTGCTGACAAGAAGGATACTCCACCAAAACCTGCATAGACGGCTCCAACGCCTAACTTCTTCACAAGCTCCAGGAAATACAGTCCCACCAGAAAATTGCATATCCAATGTACAGTGAAGCTGAAGCCCATAACTTTCGAGCGTGTCCGAGCACCACTCAGCTCTGGTATGATGATTCCTGTAACTGGTCCGGCTCCAATGGCGAATGTAAATATGTACAACAGAGTTCCAGTAATTGACAGGCCATGGCTAACTCCTTCATCAAGGGGGAAGCTAATAGCATATACTATTAGGAACATTGCAAGTGCCATTCCAAGATAGCTTCCTGTCAAGAGTTTCTTTCGAC                                                    ]
[-] EMBL CB680833             [                                                                                                             GTAATGTGATCCATTATATACATGGTTATATAACTACACAAGTAAGGTGACACCATGGATCTGCTGGATGGCTACTGCTTCT     ACATAACCACTATATGCACTGACAAGCAGGTTGGATCATTAGAACAACAATCTGGAATTCCAGTACCCCATGGATCAAAAACTCCTTGGAGCAGTTGAATGCTTGGTCCATCTGCGTAAGTGAATGAAAGAATGTGTCTCACTCTCGCTTGCCAGGGGCAGCAGGGCTCAGAGACATTTCGATTTCCTCAAGAGAACGTCCTTTCGTCTCGACAATGAAATTGTAGGCGAAAAGTGCTGACAACAAGGATACTCCACCAAAACCTGCATAGACGGCTCCAACGCCTAACTTCTTCGCAAGCTCCAGGAAATACAGTCCCACCAGAAAATTGCATATCCAATGTACAGTGAAGCTGAAGCCCATAACTTTCGAGCGTGTCCGAGCACCACTCAGCTCTGGTATGATGATTCCTGTAACTGGTCCGGCTCCAATGGCGAATGTAAATATGTACAACAGAGTTCCAGTAATTGACAGGCCATGGCTAACTCCTTCATCAAGGGGGAAGCTAATGGCATATACTATTAGGAACATTGCAAGTGCTATTCCAAGATAGCTTCCTGTCAAGAGTTTCTTTCGACCTTGTCTTATaaag                                      ]
[-] EMBL AW070060             [                                                                                                                                                                                                                                                                             ATCAAAAACTCCTTGGAGCAGTTGAATGCTTGGTCCATCTGCGTAAGTGAATGAAAGAATGTGTCTCACTCTCGCTTGCCAGGGGCGGCAGGGCTCAGAGACATTTCGATTTCCTCAAGAGAACGTCCTTTCGTCTCGACAATGAAATTGTAGGCGAAAAGTGCTGACAACAAGGATACTCCACCAAAACCTGCc                                                                                                                                                                                                                                                                                                                                                                          ]




>consensus_9941#0
TCCTTTTTTTTTTTTTTTTTTTTTAAAACAATGGCAATTCTCTACTCTTTATTTGCATGG
TTACTTCAACTGCTTGCCCTATTAACAACCTGAGGTGTGTGTTCTTCAGTAATGTGATCC
ATTATATACATGGTTATATAACTACACAAGTAAGGTGACAACATGGATCTGCTGGATGGC
TACTGCTTCTACATAACCACTATATGCACTGACAAGCAGGTTGGATCATTAAAACAACAA
TCTGGAATTCCAGTACCCCATGGATCAAAAACTCCTTGGAGCAGTTGAATGCTTGGTCCA
TCTGCGTAAGTGAATGAAAGAATGTGTCTCACTCTCGCTTGCCAGGGGCAGCAGGGCTCA
AAAACATTTCGATTTCCTCAAGAAAACGTCCTTTCGTCTCGACAATGAAATTGTAGGCGA
AAAGTGCTGACAACAAGGATACTCCACCAAAACCTGCATAGACGGCTCCAACGCCTAACT
TCTTCGCAAGCTCCAGGAAATACAGTCCCACCAGAAAATTGCATATCCAATGTACAGTGA
AGCTGAAGCCCATAACTTTCGAGCGTGTCCGAGCACCACTCAGCTCTGGTATGATGATTC
CTGTAACTGGTCCGGCTCCAATGGCGAATGTAAATATGTACAACAGAGTTCCAGTAATTG
ACAGGCCATGGCTAACTCCTTCATCAAGGGGGAAGCTAATGGCATATACTATTAGGAACA
TTGCAAGTGCTATTCCAAGATAGCTTCCTGTCAAGAGTTTCTTTCGACCTTGCTTATCCA
TCAAAATTGAAGCAACAATTGNCCCCTGCAAAATTAGTT

consensusID : consensus_9941#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTAAACAAGGGCAATTCTCTACTCTTTATTTGCATGGTTACTTCAACTGCTTGCCCTATTAACAACCTGAGGTGGGTGTTCTTCAGTAATGGGATCCATTATATACATGGTTATATAACTACACAAGTAAGGGGACAACATGGATCTGCTGGATGGCTACTGCCTCTACATAACCACTATATGCACTGACAAGCAGGTTGGATCATTAAAACAACCCCCTTGTCTCGTCCTCT]

[+] EMBL CA760446             [TTTTTTTTTTTTTTTTTTTAAACAAGGGCAATTCTCTACTCTTTATTTGCATGGTTACTTCAACTGCTTGCCCTATTAACAACCTGAGGTGGGTGTTCTTCAGTAATGGGATCCATTATATACATGGTTATATAACTACACAAGTAAGGGGACAACATGGATCTGCTGGATGGCTACTGCCTCTACATAACCACTATATGCACTGACAAGCAGGTTGGATCATTAAAACAACCCCCTTGTCTCGTCCTCT]




>consensus_9941#1
TTTTTTTTTTTTTTTTTTTAAACAAGGGCAATTCTCTACTCTTTATTTGCATGGTTACTT
CAACTGCTTGCCCTATTAACAACCTGAGGTGGGTGTTCTTCAGTAATGGGATCCATTATA
TACATGGTTATATAACTACACAAGTAAGGGGACAACATGGATCTGCTGGATGGCTACTGC
CTCTACATAACCACTATATGCACTGACAAGCAGGTTGGATCATTAAAACAACCCCCTTGT
CTCGTCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9941#0      TCCTTTTTTTTTTTTTTTTTTTTTAAAACAATGGCAATTCTCTACTCTTTATTTGCATGG 60
consensus_9941#1      ------TTTTTTTTTTTTTTTTTTTAAACAAGGGCAATTCTCTACTCTTTATTTGCATGG 54
                            ****************** ****** ****************************

consensus_9941#0      TTACTTCAACTGCTTGCCCTATTAACAACCTGAGGTGTGTGTTCTTCAGTAATGTGATCC 120
consensus_9941#1      TTACTTCAACTGCTTGCCCTATTAACAACCTGAGGTGGGTGTTCTTCAGTAATGGGATCC 114
                      ************************************* **************** *****

consensus_9941#0      ATTATATACATGGTTATATAACTACACAAGTAAGGTGACAACATGGATCTGCTGGATGGC 180
consensus_9941#1      ATTATATACATGGTTATATAACTACACAAGTAAGGGGACAACATGGATCTGCTGGATGGC 174
                      *********************************** ************************

consensus_9941#0      TACTGCTTCTACATAACCACTATATGCACTGACAAGCAGGTTGGATCATTAAAACAACAA 240
consensus_9941#1      TACTGCCTCTACATAACCACTATATGCACTGACAAGCAGGTTGGATCATTAAAACAACCC 234
                      ****** ***************************************************  

consensus_9941#0      TCTGGAATTCCAGTACCCCATGGATCAAAAACTCCTTGGAGCAGTTGAATGCTTGGTCCA 300
consensus_9941#1      CCTTG---TCTCGTCCTCT----------------------------------------- 250
                       ** *   **  ** * *                                          

consensus_9941#0      TCTGCGTAAGTGAATGAAAGAATGTGTCTCACTCTCGCTTGCCAGGGGCAGCAGGGCTCA 360
consensus_9941#1      ------------------------------------------------------------
                                                                                  

consensus_9941#0      AAAACATTTCGATTTCCTCAAGAAAACGTCCTTTCGTCTCGACAATGAAATTGTAGGCGA 420
consensus_9941#1      ------------------------------------------------------------
                                                                                  

consensus_9941#0      AAAGTGCTGACAACAAGGATACTCCACCAAAACCTGCATAGACGGCTCCAACGCCTAACT 480
consensus_9941#1      ------------------------------------------------------------
                                                                                  

consensus_9941#0      TCTTCGCAAGCTCCAGGAAATACAGTCCCACCAGAAAATTGCATATCCAATGTACAGTGA 540
consensus_9941#1      ------------------------------------------------------------
                                                                                  

consensus_9941#0      AGCTGAAGCCCATAACTTTCGAGCGTGTCCGAGCACCACTCAGCTCTGGTATGATGATTC 600
consensus_9941#1      ------------------------------------------------------------
                                                                                  

consensus_9941#0      CTGTAACTGGTCCGGCTCCAATGGCGAATGTAAATATGTACAACAGAGTTCCAGTAATTG 660
consensus_9941#1      ------------------------------------------------------------
                                                                                  

consensus_9941#0      ACAGGCCATGGCTAACTCCTTCATCAAGGGGGAAGCTAATGGCATATACTATTAGGAACA 720
consensus_9941#1      ------------------------------------------------------------
                                                                                  

consensus_9941#0      TTGCAAGTGCTATTCCAAGATAGCTTCCTGTCAAGAGTTTCTTTCGACCTTGCTTATCCA 780
consensus_9941#1      ------------------------------------------------------------
                                                                                  

consensus_9941#0      TCAAAATTGAAGCAACAATTGNCCCCTGCAAAATTAGTT 819
consensus_9941#1      ---------------------------------------