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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1309 fasta sequence
[GCCGCCTTCTCACTCCTCACCTGCTCCTGTCTCCGGAGCACCAGCCCGACCAGGCTCCCCTCCTCCTCGCTCCGCCTCCCGCTCCGCCGCGGCCCGCTCGCCGCGATGGCCACGGCCGCCTCCTTCCGCCCGGAGGCCGCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTCTCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATCGCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTCCCGGAGATATGGAATGGTCCATATTCAAATGACAGCTTTCCAGAATATGCCGAAGACATCGAAGCCGGTGGTGATGCAGCTCCTTCATTTTCAATGATGTCAGAGGTTGCTCGCAGCTTGCAAATTACTCTTGTTGGTGGATCCATATCAGAACGTTCTGGTAACAAGTTGTACAATACATGCTGTGTCTTTGGTTCAGATGGCGAGCTTAAGGGCAAGCACAGAAAGATCCATCTTTTTGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCAGGATCTTACTGTTGTAGACACAGATGTAGGCCGGATTGGTATAGGTATTTGTTATGACATTCGTTTCCAGGAATTGGCAATGTTGTATGCTGCGAGAGGTGCTCATTTGTTATGCTATCCCGGTGCATTTAACATGACTACAGGGCCATTGCACTGGGAGTTGCTGCAAAGGGCAAGGGCTGCA-GACAATCAGCTGT-TTGTGGCAACCTGTGCACCAGCTCGAGACACCA-GTGCAGGTTATATTGCTTGGGGACATTCCACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGAGCATGAGGAGACCACTATAATGGCAGAAATTGATTATTCATTGATTGATCAGAGGAGGCAATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCAGTTGGTAGATGTCCAGAGATCCGGCTCTGATGAGTAGCCAGCCTGGATGCATTGCGCCACTA-GGCGTGATCCGTGAAAATATTATTCGTCCGCGAGATGCATGTGCCCACCCTTATCCGCAGCAGTTCACCCAGGAACATTGAC-TTCGTGTGT-GAAGAGGTGACCTGTAACACGTACCTTGCCAAATTGATTTACTATAAACATTATCATGGT-AATAAT-AAAAAGTCGAAATTAAATGCTCTAAAAAAAAAAAAAAAAAAACTCGAACTTNTTTGCGGGGGGGGCCCNGTACCCCAATCCCCTAAAGG]
[+] EMBL AK059981 [GCCGCCTTCTCACTCCTCACCTGCTCCTGTCTCCGGAGCACCAGCCCGACCAGGCTCCCCTCCTCCTCGCTCCGCCTCCCGCTCCGCCGCGGCCCGCTCGCCGCGATGGCCACGGCCGCCTCCTTCCGCCCGGAGGCCGCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTCTCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATCGCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTCCCGGAGATATGGAATGGTCCATATTCAAATGACAGCTTTCCAGAATATGCCGAAGACATCGAAGCCGGTGGTGATGCAGCTCCTTCATTTTCAATGATGTCAGAGGTTGCTCGCAGCTTGCAAATTACTCTTGTTGGTGGATCCATATCAGAACGTTCTGGTAACAAGTTGTACAATACATGCTGTGTCTTTGGTTCAGATGGCGAGCTTAAGGGCAAGCACAGAAAGATCCATCTTTTTGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCAGGATCTTACTGTTGTAGACACAGATGTAGGCCGGATTGGTATAGGTATTTGTTATGACATTCGTTTCCAGGAATTGGCAATGTTGTATGCTGCGAGAGGTGCTCATTTGTTATGCTATCCCGGTGCATTTAACATGACTACAGGGCCATTGCACTGGGAGTTGCTGCAAAGGGCAAGGGCTGCA GACAATCAGCTGT TTGTGGCAACCTGTGCACCAGCTCGAGACACCA GTGCAGGTTATATTGCTTGGGGACATTCCACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGAGCATGAGGAGACCACTATAATGGCAGAAATTGATTATTCATTGATTGATCAGAGGAGGCAATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCAGTTGGTAGATGTCCAGAGATCCGGCTCTGATGAGTAGCCAGCCTGGATGCATTGCGCCACTA GGCGTGATCCGTGAAAATATTATTCGTCCGCGAGATGCATGTGCCCACCCTTATCCGCAGCAGTTCACCCAGGAACATTGAC TTCGTGTGT GAAGAGGTGACCTGTAACACGTACCTTGCCAAATTGATTTACTATAAACATTATCATGGT AATAAT AAAAGGTCGAA ]
[+] EMBL BP184696 [ GCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTCTCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATCGCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTCCCGGAGATATGGAATGGTCCATATTCAAATGACAGCTTTCCAGAATATGCCGAAGACATCGAAGCCGGTGGTGATGCAGCTCCTTCATTTTCAATGATGTCAGAGGTTGCTCGCAGCTTGCAAATTACTCTTGTTGGTGGATCCATATCAGAACGTTCTGGTAACAAGTTGTACAATACATGCTGTGTCTTTGGTTCAGATGGCGAGCTTAAGGGCAAGCACAGAAAGATCCATCTTTTTGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCAGGATCTTACTGTTGTAGACACAGATGTAGGCCGGATTGGTATAGGTATTTGTTATGACATTCGTTTCCAGGAATTGGCAATGTTGTATGCTGCGAGAGGTGCTCATTTGTTATGCTATCCCGGTGCATTTAACATGACTACAGGGCCATTGCACTGGGAGTTGCTGC AAGGGCAAGG ]
[+] EMBL BP184420 [ CGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTCTCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATCGCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTCCCGGAGATATGGAATGGTCCATATTCAAATGACAGCTTTCCAGAATATGCCGAAGACATCGAAGCCGGTGGTGATGCAGCTCCTTCATTTTCAATGATGTCAGAGGTTGCTCGCAGCTTGCAAATTACTCTTGTTGGTGGATCCATATCAGAACGTTCTGGTAACAAGTTGTACAATACATGCTGTGTCTTTGGTTCAGATGGCGAGCTTAAGGGCAAGCACAGAAAGATCCATCTTTTTGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCAGGATCTTACTGTTGTAGACACAGATGTAGGCCGGATTGGTATAGGTATTTGTTATGACATTCGTTTCCAGGAATTGGCAATGTTGTATGCTGCGAGAGGTGCTCATTTGTTATGCTATCCCGGTGCATTTAACATGACTA ]
[+] EMBL CA757915 [ TACAATACATGCTGTGTCTTTGGTTCAGATGGCGAGCTTAAGGGCAAGCACAGAAAGATCCATCTTTTTGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCAGGATCTTACTGTTGTAGACACAGATGTAGGCCGGATTGGTATAGGTATTTGTTATGACATTCGTTTCCAGGAATTGGCAATGTTGTATGCTGCGAGAGGTGCTCATTTGTTATGCTATCCCGGTGCATTTAACATGACTACAGGGCCATTGCACTGGGAGTTGCTGCAAAGGGCAAGGGCTGCA GACAATCAGCTGT TTGTGGCAACCTGTGCACCAGCTCGAGACACCA GTGCAGGTTATATTGCTTGGGGACATTCCACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGAGCATGAGGAGACCACTATAATGGCAGAAATTGATTATTCATTGATTGATCAGAGGAGGCAATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCAGTTGGTAGATGTCCAGAGATCCGGCTCTGATGAGTAGCCAGCCTGGATGCATTGCGCCACTAGGGCGTGATCCGTGAAAATATTATTCGTCCGCGAGATGCATGTGCCCACCCTTATCGGCAGCAGTTCACCCAGGAACATTGACTTTCGTGTGTGGAAGAGGTGACCTGTAACACGTACCTTGCCAANATGATTTACTATAAACATTATCATGGTNANTAATNAAAAAGTCGAAATTAAATGCTCTAAAAAAAAAAAAAAAAAAACTCGAACTTNTTTGCGGGGGGGGCCCNGTACCCCAATCCCCTAAAGG]
[+] EMBL BM420408 [ ATTGCACTGGGAGTTGCTGCAAAGGGCAA GGCTGCATGACAATCANCTGTGTTGTGGCAACCTGTGCACCAGCTCGAGACACCACGTGCAGGTTATATTGCTTGGGGACATTCCACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGAGCATGAGGAGACCACTATAATGGCAGAAATTGATTATTCATTGATTGATCAGAGGAGGCAATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCAGTTGGTAGATGTCCAGAGATCCGGCTCTGATGAGTAGCCAGCCTGGATGC TTGCGCCACTA GGCGTGATCCGTGAAAATATTATTCGTCCGCGAGATGCATGTGCCCACCCTTATCCGCAGCAGTTCACCCAGGAAC TTGAC TTCGTGTGT GAAGAGGTGACCTGTAACACGTACCTTGCC AATTGATTTACTATAAACATTATCATGGT AATAAT AAAAAGTCGAAATTAAATGCTCTAAAAAAAAAA ]
[-] EMBL AW070121 [ ACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGAGCATGAGGAGACCACTATAATGGCAGAAATTGATTATTCATTGATTGATCAGAGGAGGCAATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCA ]
consensusID : consensus_9943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[CACCTGCTCCTGTCTCCGGAGCACCAGCCCGACCAGGCTCCCCTCCTCCTCGCTCCGCCTCCCGCTCCGCCGCGGCCCGCTCGCCGCGATGGCCACGGCCGCCTCCTTCCGCCCGGAGGCCGCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTCTCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATCGCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTCCCGGTGAGCGCTCGGTTGATCATAACGACCTCTCGTTTTGTCTGCTCGTCCGATTTAAATGGGAGGCGGAGAGGTGAGGATTGAGTGTGATGGAGTCATAGCTCGGCAAGGGTTCGCGGATAGGATCATAGGACCACACGATCTTAGCGTGGTTACGTACATTGAACTGTGAATAGCACTAGCACTGTTATGCACAGTGACAGAAGACACCTCTCACTTCACATCTTAAAACCATGAATGTGCCTCTTGGATTGTGTTTCCGCATGATTTGGTGACCAGATGGAATAGTTTGTACTGTTGCTTGATCGGGTTATCTCCTACCTGTGACAATTTGGTCTTGC]
[+] EMBL CB639881 [CACCTGCTCCTGTCTCCGGAGCACCAGCCCGACCAGGCTCCCCTCCTCCTCGCTCCGCCTCCCGCTCCGCCGCGGCCCGCTCGCCGCGATGGCCACGGCCGCCTCCTTCCGCCCGGAGGCCGCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTCTCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATCGCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTCCCGGTGAGCGCTCGGTTGATCATAACGACCTCTCGTTTTGTCTGCTCGTCCGATTTAAATGGGAGGCGGAGAGGTGAGGATTGAGTGTGATGGAGTCATAGCTCGGCAAGGGTTCGCGGATAGGATCATAGGACCACACGATCTTAGCGTGGTTACGTACATTGAACTGTGAATAGCACTAGCACTGTTATGCACAGTGACAGAAGACACCTCTCACTTCACATCTTAAAACCATGAATGTGCCTCTTGGATTGTGTTTCCGCATGATTTGGTGACCAGATGGAATAGTTTGTACTGTTGCTTGATCGGGTTATCTCCTACCTGTGACAATTTGGTCTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9943#0 GCCGCCTTCTCACTCCTCACCTGCTCCTGTCTCCGGAGCACCAGCCCGACCAGGCTCCCC 60
consensus_9943#1 -----------------CACCTGCTCCTGTCTCCGGAGCACCAGCCCGACCAGGCTCCCC 43
*******************************************
consensus_9943#0 TCCTCCTCGCTCCGCCTCCCGCTCCGCCGCGGCCCGCTCGCCGCGATGGCCACGGCCGCC 120
consensus_9943#1 TCCTCCTCGCTCCGCCTCCCGCTCCGCCGCGGCCCGCTCGCCGCGATGGCCACGGCCGCC 103
************************************************************
consensus_9943#0 TCCTTCCGCCCGGAGGCCGCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTC 180
consensus_9943#1 TCCTTCCGCCCGGAGGCCGCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTC 163
************************************************************
consensus_9943#0 TCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATC 240
consensus_9943#1 TCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATC 223
************************************************************
consensus_9943#0 GCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTC 300
consensus_9943#1 GCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTC 283
************************************************************
consensus_9943#0 CCGGAGA-TATGGAATGGTCCATATTCAAATGACAGCTTTCCAGAATATGCCGAAGACAT 359
consensus_9943#1 CCGGTGAGCGCTCGGTTGATCATAACGACCTCTCGTTTTGTCTGCTCGTCCGATTTAAAT 343
**** ** * * **** * * * ** * * * * * **
consensus_9943#0 CGAAGCCGGTGGTGATGCAGCTCCTTCATTTTCAATGATGTCAGAGGTTGCTCGCAGCTT 419
consensus_9943#1 GGGAGGCGG-AGAGGTGAGGATT----GAGTGTGATGGAGTCATAGCTCGGCAAGGGTTC 398
* ** *** * * ** * * * *** **** ** * * * *
consensus_9943#0 GCAAATTACTCTTGTTGGTGGATCCATATCAGAACGTTCTGGTAACAAGTTGTACAATAC 479
consensus_9943#1 GCGGATAG-----GATCATAGGACCACACGATCTTAGCGTGGTTAC-----GTACATTGA 448
** ** * * * * *** * * **** ** ***** *
consensus_9943#0 ATGCTGTGTCTTTGGTTCAGATGGCGAGCTTAAGGGCAAGCACAGAAAGATCCATCTTTT 539
consensus_9943#1 AC----TGTGAATAGCAC---TAGCACTGTTATGCACAGTGACAGAAGACACCTCTCACT 501
* *** * * * * ** *** * ** ****** ** *
consensus_9943#0 TGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCA 599
consensus_9943#1 TCACATCTTAAAACC----ATGAATGTGCCTCTTGGATTGTGTTTCCGCATGATTTGGTG 557
* **** * ** * ** * * ** * * * * **
consensus_9943#0 GGATCTTACTGTTGTAGACACAGATGTAGGCCGGATTGGTATAGGTATTTGTTATGACAT 659
consensus_9943#1 ACCAGATGGAATAGTTTGTACTGTT----GCTTGATCGGGTTATCTCCTACCTGTGACAA 613
* * ** ** * * ** *** ** ** * * * *****
consensus_9943#0 TCGTTTCCAGGAATTGGCAATGTTGTATGCTGCGAGAGGTGCTCATTTGTTATGCTATCC 719
consensus_9943#1 TTTGGTCTTGC------------------------------------------------- 624
* ** *
consensus_9943#0 CGGTGCATTTAACATGACTACAGGGCCATTGCACTGGGAGTTGCTGCAAAGGGCAAGGGC 779
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 TGCAGACAATCAGCTGTTTGTGGCAACCTGTGCACCAGCTCGAGACACCAGTGCAGGTTA 839
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 TATTGCTTGGGGACATTCCACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGA 899
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 GCATGAGGAGACCACTATAATGGCAGAAATTGATTATTCATTGATTGATCAGAGGAGGCA 959
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 ATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCAGTTGGTAGATGTCCAGAG 1019
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 ATCCGGCTCTGATGAGTAGCCAGCCTGGATGCATTGCGCCACTAGGCGTGATCCGTGAAA 1079
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 ATATTATTCGTCCGCGAGATGCATGTGCCCACCCTTATCCGCAGCAGTTCACCCAGGAAC 1139
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 ATTGACTTCGTGTGTGAAGAGGTGACCTGTAACACGTACCTTGCCAAATTGATTTACTAT 1199
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 AAACATTATCATGGTAATAATAAAAAGTCGAAATTAAATGCTCTAAAAAAAAAAAAAAAA 1259
consensus_9943#1 ------------------------------------------------------------
consensus_9943#0 AAACTCGAACTTNTTTGCGGGGGGGGCCCNGTACCCCAATCCCCTAAAGG 1309
consensus_9943#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||