These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2040 fasta sequence [CAGAGTCAACCACGCCCGCACAACGCGAAAACACCGCGTTTCCCCCACCATTTCCGCCCGAAATCAACCGGGCCAAGAAAAAAAAAAAAAAACAGCACACCGCCGACGAGATGCGCCTCCACCTCGCCCTCCTCGCCGCGCTCCTCACCCTCGCCGCCGCCGCCCAGCCGCCATTCCGCGGCTACTACTACCTGCTCGACTGCGGCGCCGCGGCGTCCACCACCGACAGCCGCGGCCTCGAGTGGCTCCCCGATGGCGGCTACGTCACCGGCGGCGAGCCCCACCAGCTCCCCGACCAGGGCCTCCTCGACCCGGCGCTCGCCACCCGCCGTGACTTCCCGCACGAGCCCGGGAAGAAGTTCTGCTACGAGCTCCCCGTCGACCGCAACCGCCGCTACCTGCTCCGCCCCACCTTCTTCTACGGGGCCTCCTCGCCGCCGCCGCCCGTCTTCGACCTCATCGTGGACGGCACCTTCTGGACCGCCGTCAACACCACCGACGACGTCCTCGCCGGCAGCGCCTCCTACTACGAGGCCGTCTTCGGCGCGAGCGGCAGGAACATGAGTTTCTGCCTCGGCGTGAACCCGGACTACACCAGCGCTGGCCCTTTCATCAACGCGCTGCAGGTGATCCAGCTTCACGATTCGGTGTACAACGCCACGAACTTCACTACCAGCGCCATGGGGCTCATTGCGCGTACCAAGTTTGGCTCCACCGACGGTGTTGAGAGGTACCCTAATGACACCTTCAATCGGTATTGGCAGCCATTCCCAGACAGTAAACATGCAGTCAGTAGTACCCACAATGTCACATCGGCTGATTTTTGGAATCTTCCACCTCCTGGGGTGTTTAATACAGCTTTGGTGGCAGAACAAGATGCACCCTTGGTGCTGCAATGGCCTCCAATACCTCTCCAGAATGATAGCTATTATGTTGCTCTTTATTTTGCTGATACAGTCTCTGAGAGTTCAAGGACCTTTAATGTATATATAAATGATTACAGCTTCTATGAAGGCCTAACAGTAACATCAGCTGGTCTTTCTGTCTTTGCAACACAATGGATTCTCTCAGGCTTGACCAGAGTTATTTTGGCTCCTATTTCTGGCCTTCCTCCACTTATCAATGCTGGTGAAGTCTTTGGACTTTTCCCACTAGGAGGATACACATTTCCTCGGGATGCACATGCCCTGGAAGCTATTAAGAGAAGCCTTCAAAATATACCTGATGATTGGAATGGAGATCCATGTATGCCTCATGGATATGCTTGGACTGGAGTTACATGTGATAAAGGCCAAATACCACGTGTCATCTCACTGAACTTTTCAAGTATGGGCCTCTCTGGATATCTTTCATCTGATATTGCAAGGCTCACCGCTCTGACTGATATATCTTTTGCAAACAATAGCTTGTCTGGACCTATTCCAAATCTCAGCAACCTGAGGAATCTCACAAGACTGCACCTGCAGGACAACAAATTAAATGGAACAGTACCGCAGACACTGGGGATAATCACATCTTTGCGTGAACTATTCTTGCAGAACA-ATGAACTGGATGGAGCAGTTCCA-CTGAACTTGCTGTTGAATCAAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACTTTTTTCCAAGACCA-CCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGACAGTTTGTCGATTCTTTGGGTGGCTACACCAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCGTTAGCAACGGCAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTACATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCTTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACA-CAATATATATGGTCTACGTCTTTTTTTTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK073507 [CAGAGTCAACCACGCCCGCACAACGCGAAAACACCGCGTTTCCCCCACCATTTCCGCCCGAAATCAACCGGGCCAAGAAAAAAAAAAAAAAACAGCACACCGCCGACGAGATGCGCCTCCACCTCGCCCTCCTCGCCGCGCTCCTCACCCTCGCCGCCGCCGCCCAGCCGCCATTCCGCGGCTACTACTACCTGCTCGACTGCGGCGCCGCGGCGTCCACCACCGACAGCCGCGGCCTCGAGTGGCTCCCCGATGGCGGCTACGTCACCGGCGGCGAGCCCCACCAGCTCCCCGACCAGGGCCTCCTCGACCCGGCGCTCGCCACCCGCCGTGACTTCCCGCACGAGCCCGGGAAGAAGTTCTGCTACGAGCTCCCCGTCGACCGCAACCGCCGCTACCTGCTCCGCCCCACCTTCTTCTACGGGGCCTCCTCGCCGCCGCCGCCCGTCTTCGACCTCATCGTGGACGGCACCTTCTGGACCGCCGTCAACACCACCGACGACGTCCTCGCCGGCAGCGCCTCCTACTACGAGGCCGTCTTCGGCGCGAGCGGCAGGAACATGAGTTTCTGCCTCGGCGTGAACCCGGACTACACCAGCGCTGGCCCTTTCATCAACGCGCTGCAGGTGATCCAGCTTCACGATTCGGTGTACAACGCCACGAACTTCACTACCAGCGCCATGGGGCTCATTGCGCGTACCAAGTTTGGCTCCACCGACGGTGTTGAGAGGTACCCTAATGACACCTTCAATCGGTATTGGCAGCCATTCCCAGACAGTAAACATGCAGTCAGTAGTACCCACAATGTCACATCGGCTGATTTTTGGAATCTTCCACCTCCTGGGGTGTTTAATACAGCTTTGGTGGCAGAACAAGATGCACCCTTGGTGCTGCAATGGCCTCCAATACCTCTCCAGAATGATAGCTATTATGTTGCTCTTTATTTTGCTGATACAGTCTCTGAGAGTTCAAGGACCTTTAATGTATATATAAATGATTACAGCTTCTATGAAGGCCTAACAGTAACATCAGCTGGTCTTTCTGTCTTTGCAACACAATGGATTCTCTCAGGCTTGACCAGAGTTATTTTGGCTCCTATTTCTGGCCTTCCTCCACTTATCAATGCTGGTGAAGTCTTTGGACTTTTCCCACTAGGAGGATACACATTTCCTCGGGATGCACATGCCCTGGAAGCTATTAAGAGAAGCCTTCAAAATATACCTGATGATTGGAATGGAGATCCATGTATGCCTCATGGATATGCTTGGACTGGAGTTACATGTGATAAAGGCCAAATACCACGTGTCATCTCACTGAACTTTTCAAGTATGGGCCTCTCTGGATATCTTTCATCTGATATTGCAAGGCTCACCGCTCTGACTGATATATCTTTTGCAAACAATAGCTTGTCTGGACCTATTCCAAATCTCAGCAACCTGAGGAATCTCACAAGACTGCACCTGCAGGACAACAAATTAAATGGAACAGTACCGCAGACACTGGGGATAATCACATCTTTGCGTGAACTATTCTTGCAGAACA ATGAACTGGATGGAGCAGTTCCA CTGAACTTGCTGTTGAATCAAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACTTTTTTCCAAGACCA CCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGACAATTTGTCGATTCTTTGGGTGGCTACACCAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCGTTAGCAACGGTAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTACATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCTTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACA CAATATATATGGTCTACGTCTTTTTTTTTCTTT ] [+] EMBL AU173865 [ AAAAAAAACAGCACACCGCCGACGAGATGCGCCTCCACCTCGCCCTCCTCGCCGCGCTCCTCACCCTCGCCGCCGCCGCCCAGCCGCCATTCCGCGGNTACTACTACCTGCTCGACTGCGGCGCCGCGGCGTCCACCACCGACAGCCGGGGCCTCGAGTGGCTCCCCGATGGCGGCTACGTCACCGGCGGCGAGCCCCACCAGCTCCCCGACCAGGGCCTCCTCGACCCGGCGCTCGCCACCCGCCGTGACTTCCCGCACGAGCCCGGGAAGAAGTTCTGCTACGAGCTCCCCGTCGACCGCAACCGCCGNTACCTGCTCCGCCCCACCTTCTTCTACGGGGCCTCCTCGCCGCCGCCGCCCGTNTTCGACCTTATCGNGGACGGCACCTTCTGGACCGCCGTCAACACCACCGACGACG ] [-] EMBL CA762211 [ cTCATCTGATATTGCAAGGCTCACCGCTCTGCATGATATATCTTTTGCAAACAATAGCTTGTCTGGACCTATTCCAAATCTCAGCAACCTTAGGAATCTCACAAGACTGCACCTGCAGGACAACAAATTAAATGGACCAGTACCGCAGACACTGGGGATAATCACATCTTTGCGTGAACTATTCTTGCAGAACA ATGAACTGGATGGAGCAGTTCCA CTGAACTTGCTGTTGAATCAAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACTTTTTTCCAAGACCA CCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGACAGTTTGTCGATTCTTTGGGTGGCTACACCAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCG AGCAACGGCAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTACATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCTTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACA CAATATATATGGTCTACGTCTTTTTT TTTAAAAAAAAAAA ] [+] EMBL CB634012 [ AAATGGAACAGTACCGCAGACACTGGGGATAATCACATCTTTGCGTGAACTATTCTTGCAGAACA ATGAACTGGATGGAGCAGTTCCA CTGAACTTGCTGTTGAATCAAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACTTTTTTCCAAGACCA CCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGACAGTTTGTCGATTCTTGGTGTAGCCACCCAAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCG AGCAACGGCAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTACATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCTTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACA CAATATATATGGTCTACGTC ] [+] EMBL CA766316 [ ATCTTTGCGTGAACNCTTCTTGCAGAACA ATGGACTGGATGGAGCAGTTCCA CTGAACTTGCTGTTGAAT AAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACTTTTTTCCAAGACCA CCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGACAGTTTGTCGATTCTTTGGGTGGCTACACCAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCG AGCAACGGCAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTGCATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCCTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACA CAATATATATGGTCTACGTCT ] [+] EMBL BQ908961 [ TCTTTGCGTGAACTATTCTTGCAGAACACATGAACTGGATGGAGCAGTTCCACCTGAACTTGCTGTTGAATCAAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACTTTTTTCCAAGACCACCCTCGCTGACAATCAGGCATTTTATTTGCAACCCATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGACAGTTTGTCGATTCTTTGGGTGGCTACACCAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCGTTAGCAACGGCAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTACATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCTTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACACCAATATATATGGTCTACGTCTTTTTCTTTTTTCAAAAAAAAAA ] [+] EMBL AU173866 [ TTCCGGGGAACAACTTTTTTCCAAGACCA CCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGNCAATTTGTCGATTCTTTGGGTGGCTACACCAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCGTTAGCANCGGTAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTACATTGTCAATATATTCAGGAGGAAGGGTTGTGATNCCCAANAAGTGTTTGATGATCTTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACN CAATATATATGGTCTACGTCTTTTTTTTTCTTTTTGGTGCTAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||