These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 878 fasta sequence [CCCCTCCCCCCTCTCTCTCTCAAAATGACAGCGTCAGCGGTGCCTCTCCCTCTCCGCCGCAACGGCGCCGCTCCCCTTCTCCCTCCCCCACCGGTGGCGCTGCTCCCCCTCCCAGCACCGGTGGCGCCGCTCCATCTCCCCCCTCCCTCCCGTTTCGTTCACACGGCGCTGCATCGGCGAGTGCTCGACGGGGGTAAGTCAGCGACGACGACCACCCTCACTTCCCCTCTCCCCATCGGCCTCGATGGTGGGGCTACGGGGCGGGCCATCCTTCTCTCTTTTTCTCATCTGCCTCCGAGCAGGAGGAGAGCGCCGGAGGATGGGGCGCCGGGGTAGAGGGAGAGGGTGCCGACGCGGTTGGGGAGGCGGTGAGTGTGGCCGTGCCTGGCGGGCGTGACCACGATAGGAGCGCAGTGGACGGCGATGGCGACGAGCTAAGATCAACCGGATCGGGTGACATTAAGCTTGCCCATTTATGTGATTTTTTCCTCTCCTTTTTTTCTTTTTTTCTAGGGTTCTCGATGCGTATATCTGTTCGAATTGATTCTTTTTTCACGTAGATTTACCCGTTTAAATTTCTATGGAGCTCCCCAATTGAATTTCGTACCGATCTTTGATTTGATTTTGTGTGTTTTCTATCGCACATGATTGGCATATAAAGTGATGACGGAGGAAACATTAGCGCCATGACGGATGAAAACGCGGACACAGAGATGTGACGATCGGAAAGTTACGAATTTTTTAATTAGTTAAGATTAGTGTTTTTTTATCTTTAGGAAATTTGTATCGTGTCCAATAAAAATTAGTATAAACATGTGGATATAAATATATATACCCGGGATTTTGTAATCTATCTCTCGATCGTTATACAATTTTCG] [+] EMBL AK107544 [CCCCTCCCCCCTCTCTCTCTCAAAATGACAGCGTCAGCGGTGCCTCTCCCTCTCCGCCGCAACGGCGCCGCTCCCCTTCTCCCTCCCCCACCGGTGGCGCTGCTCCCCCTCCCAGCACCGGTGGCGCCGCTCCATCTCCCCCCTCCCTCCCGTTTCGTTCACACGGCGCTGCATCGGCGAGTGCTCGACGGGGGTAAGTCAGCGACGACGACCACCCTCACTTCCCCTCTCCCCATCGGCCTCGATGGTGGGGCTACGGGGCGGGCCATCCTTCTCTCTTTTTCTCATCTGCCTCCGAGCAGGAGGAGAGCGCCGGAGGATGGGGCGCCGGGGTAGAGGGAGAGGGTGCCGACGCGGTTGGGGAGGCGGTGAGTGTGGCCGTGCCTGGCGGGCGTGACCACGATAGGAGCGCAGTGGACGGCGATGGCGACGAGCTAAGATCAACCGGATCGGGTGACATTAAGCTTGCCCATTTATGTGATTTTTTCCTCTCCTTTTTTTCTTTTTTTCTAGGGTTCTCGATGCGTATATCTGTTCGAATTGATTCTTTTTTCACGTAGATTTACCCGTTTAAATTTCTATGGAGCTCCCCAATTGAATTTCGTACCGATCTTTGATTTGATTTTGTGTGTTTTCTATCGCACATGATTGGCATATAAAGTGATGACGGAGGAAACATTAGCGCCATGACGGATGAAAACGCGGACACAGAGATGTGACGATCGGAAAGTTACGAATTTTTTAATTAGTTAAGATTAGTGTTTTTTTATCTTTAGGAAATTTGTATCGTGTCCAATAAAAATTAGTATAAACATGTGGATATAAATATATATACCCGGGATTTTGTAATCTATCTCTCGATCGTTATACAATTTTCG] consensusID : consensus_995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [CCCGCTCCGCCGCGACAGCGCCGCTCCCTCTCCCCCTCTCCTTCCCGTCTCGCCGGCACGGCGCCGCATCGGGGAGTGCTCGACGGGGGTACGGCGGCGACGACGACCGTCCTCTCTTCCCCTCTCTCCGTCGGCCTCGATGGTGGGGCTACGGCGCGGGCCATCCTCTCTCTTTCTCTCCTCTGCCTCCGAGCAGGAGGAGAGCGCCGGAGGACGGGGCGCCGGGGTAGAGGGAGGGGGTGCCGGCTCGGTTGGGGAGGCGGCGAGTGTGGCCGTGCCCGGCGGGCGCGGCCACGACAGGAGCGCGGTGGACGGCGATGGAGACGAGCTCGCCCATTTATGTGATTTTTTCCTCTCCTTTTCCCCTTTTTTCTAGGGTTCTCGATGTGCATATCTGTCCGAATTGATTCTTTTTCATGTAGATTTACCCGATTAAATTTTTATGGAGGCTGCCCTAATGATTTAAAAAAAAAAAAATANATNANNTTNNNNATNAATAANANATTATAATTTTATTTATTTTTNTNNATTTATTTTTATTAATTATAAACCTGGGGG] [+] EMBL CA758488 [CCCGCTCCGCCGCGACAGCGCCGCTCCCTCTCCCCCTCTCCTTCCCGTCTCGCCGGCACGGCGCCGCATCGGGGAGTGCTCGACGGGGGTACGGCGGCGACGACGACCGTCCTCTCTTCCCCTCTCTCCGTCGGCCTCGATGGTGGGGCTACGGCGCGGGCCATCCTCTCTCTTTCTCTCCTCTGCCTCCGAGCAGGAGGAGAGCGCCGGAGGACGGGGCGCCGGGGTAGAGGGAGGGGGTGCCGGCTCGGTTGGGGAGGCGGCGAGTGTGGCCGTGCCCGGCGGGCGCGGCCACGACAGGAGCGCGGTGGACGGCGATGGAGACGAGCTCGCCCATTTATGTGATTTTTTCCTCTCCTTTTCCCCTTTTTTCTAGGGTTCTCGATGTGCATATCTGTCCGAATTGATTCTTTTTCATGTAGATTTACCCGATTAAATTTTTATGGAGGCTGCCCTAATGATTTAAAAAAAAAAAAATANATNANNTTNNNNATNAATAANANATTATAATTTTATTTATTTTTNTNNATTTATTTTTATTAATTATAAACCTGGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_995#0 CCCCTCCCCCCTCTCTCTCTCAAAATGACAGCGTCAGCGGTGCCTCTCCCTCTCCGCCGC 60 consensus_995#1 ------------------------------------------------------------ consensus_995#0 AACGGCGCCGCTCCCCTTCTCCCTCCCCCACCGGTGGCGCTGCTCCCCCTCCCAGCACCG 120 consensus_995#1 ----------------------------------------------CCCGCTCCGCCGCG 14 *** * * ** ** consensus_995#0 GTGGCGCCGCTCCATCTCCCCC-CTCCCTCCCGTTTCGTTCACACGGCGCTGCATCGGCG 179 consensus_995#1 ACAGCGCCGCTCCCTCTCCCCCTCTCCTTCCCGTCTCGCCGGCACGGCGCCGCATCGGGG 74 ********** ******** **** ****** *** ******** ******* * consensus_995#0 AGTGCTCGACGGGGGTAAGTCAGCGACGACGACCACCCTCACTTCCCCTCTCCCCATCGG 239 consensus_995#1 AGTGCTCGACGGGGGTACGGCGGCGACGACGACCGTCCTCTCTTCCCCTCTCTCCGTCGG 134 ***************** * * ************ **** *********** ** **** consensus_995#0 CCTCGATGGTGGGGCTACGGGGCGGGCCATCCTTCTCTCTTTTTCTCATCTGCCTCCGAG 299 consensus_995#1 CCTCGATGGTGGGGCTACGGCGCGGGCCATCCT-CTCTCTTTCTCTCCTCTGCCTCCGAG 193 ******************** ************ ******** **** ************ consensus_995#0 CAGGAGGAGAGCGCCGGAGGATGGGGCGCCGGGGTAGAGGGAGAGGGTGCCGACGCGGTT 359 consensus_995#1 CAGGAGGAGAGCGCCGGAGGACGGGGCGCCGGGGTAGAGGGAGGGGGTGCCGGCTCGGTT 253 ********************* ********************* ******** * ***** consensus_995#0 GGGGAGGCGGTGAGTGTGGCCGTGCCTGGCGGGCGTGACCACGATAGGAGCGCAGTGGAC 419 consensus_995#1 GGGGAGGCGGCGAGTGTGGCCGTGCCCGGCGGGCGCGGCCACGACAGGAGCGCGGTGGAC 313 ********** *************** ******** * ****** ******** ****** consensus_995#0 GGCGATGGCGACGAGCTAAGATCAACCGGATCGGGTGACATTAAGCTTGCCCATTTATGT 479 consensus_995#1 GGCGATGGAGACGAGCT------------------------------CGCCCATTTATGT 343 ******** ******** ************ consensus_995#0 GATTTTTTCCTCTCCTTTTTTTCTTTTTTTCTAGGGTTCTCGATGCGTATATCTGTTCGA 539 consensus_995#1 GATTTTTTCCTCTCCTTTTCCCCTTTTTT-CTAGGGTTCTCGATGTGCATATCTGTCCGA 402 ******************* ******* *************** * ******** *** consensus_995#0 ATTGATTCTTTTTTCACGTAGATTTACCCGTTTAAATTTCTATGGAG-CTCCCCAATTGA 598 consensus_995#1 ATTGATTCTTTTT-CATGTAGATTTACCCGATTAAATTTTTATGGAGGCTGCCCTAATGA 461 ************* ** ************* ******** ******* ** *** * *** consensus_995#0 ATTTCGTACCGATCTTTGATTTGATTTTGTGTGTTTTCTATCGCACATGATTGGCATATA 658 consensus_995#1 TTTAAAAAAAAAA----AAATANATNANNTTNNNNATNAATAANANATTATAATTTTATT 517 ** * * * * ** * * ** * ** ** *** consensus_995#0 AAGTGATGACGGAGGAAACATTAGCGCCATGACGGATGAAAACGCGGACACAGAGATGTG 718 consensus_995#1 TATTTTTNTNNAT-------TTATTTTTATTAATTATAAACCTGGGGG------------ 558 * * * *** ** * ** ** * ** consensus_995#0 ACGATCGGAAAGTTACGAATTTTTTAATTAGTTAAGATTAGTGTTTTTTTATCTTTAGGA 778 consensus_995#1 ------------------------------------------------------------ consensus_995#0 AATTTGTATCGTGTCCAATAAAAATTAGTATAAACATGTGGATATAAATATATATACCCG 838 consensus_995#1 ------------------------------------------------------------ consensus_995#0 GGATTTTGTAATCTATCTCTCGATCGTTATACAATTTTCG 878 consensus_995#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||