These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1225 fasta sequence [GACACTGACATGGACTGAGGAGTAGAAAATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTACAGGCTCCACCCCAAGGGGGAGGAGGCCACCAAGAACGTCGTCTCCAAGTGGACCGTCGTCAAGGGCGTCCTCGTCCAGCAGTCCTTCCAGATCGCCGTCTCCCTCCTCCTCTTCACGATCATTGGTGATGAAAGTGGTACTGTGAGGAAGCAGCCTCCGGCCCTTGTGATAGCATTGCAATTCATCATTGCGATGTTTGTTATGGACACATGGCAATACTTCATGCACAGATATATGCATGTCAACAAGTTCTTGTACAAGCATGTCCACTCCAAGCACCACACTCTTGTAGTCCCGTATGCCTTTGGAGCTCTCTACAACCATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGCCCTCTCCTTCCTCATCGGCGGCATGNCTCCTAAGACGGCCATATTCTTCTTCTCGTTTGCGACCATCAAGACCATCGATGACCACTGCGGCCTGTGGCTCCCGGGCAACATCCTCCATGTCTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG] [+] EMBL CF319323 [GACACTGACATGGACTGAGGAGTAGAAAATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTACAGGCTCCACCCCAAGGGGGAGGAGGCCACCAAGAACGTCGTCTCCAAGTGGACCGTCGTCAAGGGCGTCCTCGTCCAGCAGTCCTTCCAGATCGCCGTCTCCCTCCTCCTCTTCACGATCATTGGTGATGAAAGTGGTACTGTGAGGAAGCAGCCTCCGGCCCTTGTGATAGCATTGCAATTCATCATTGCGATGTTTGTTATGGACACATGGCAATACTTCATGCACAGATATATGCATGTCAACAAGTTCTTGTACAAGCATGTCCACTCCAAGCACCACACTCTTGTAGTCCCGTATGCCTTTGGAGCTCTCTACAACCATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGCCCTCTCCTTCCTCATCGGCG ] [+] EMBL OSC659 [ AAGCACCACACTCTTGTAGTCCCGTATGCCTTTGGAGCTCTCTACAACNATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGCCCTCTCCTTNCTCATCGCCNGCATGNCTCCTAAGACGGCCATATTCTTCTTCTCGTTTGCGACCATCAAGACCATCGATGACCACTGCGGCCTGTGGCTCCCGGGCAACATCCTCCATGTCTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAANTTCTCGNAGACCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTNGAGGCGCGCCCGATTA ] [-] EMBL CF319324 [ CATCAAGACCGTCGATGACCACTGCGG CTGTGGCTCCCGGGCAACATCCTCCATGTCTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAAAa ] [+] EMBL AU173531 [ AACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATNTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTNTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAA ] [+] EMBL CF315844 [ TGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG] [-] EMBL CF315845 [ GTGGCAGAGCAAAGCAAGACCGATTAAGGTCAATTTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTTTTCCTGCCAGGGCACAAAGGTCATGTCATGTTGTAGTAATGCCTGATTTTTTTAAATACATTTGTGTTGGTAGTCAGTAAAAGTTTTTTTCATGTTTAAAAACCCAAACCCTTTTGTGGGGGATGCCATTTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTTAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_9955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [CTTTCNTTCTTTCCTCGNAGTGCGTCTCGCCTCCGTCCAAAAAAAGAACAAATCTTTGTACGNAGTCGGCCGGGTCTCGCCGCCTTTTAAAACCCCGGCCCGCCCGCCACCGGCCACCGCNTTGGGCCATTGCCCCCCCTCCGAATTGCTTCGCTATAAGTACTCGCCGGAGTGGCCGCCCTGCACCATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTAC] [+] EMBL AU173530 [CTTTCNTTCTTTCCTCGNAGTGCGTCTCGCCTCCGTCCAAAAAAAGAACAAATCTTTGTACGNAGTCGGCCGGGTCTCGCCGCCTTTTAAAACCCCGGCCCGCCCGCCACCGGCCACCGCNTTGGGCCATTGCCCCCCCTCCGAATTGCTTCGCTATAAGTACTCGCCGGAGTGGCCGCCCTGCACCATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9955#0 ------------------------------------------------------------ consensus_9955#1 CTTTCNTTCTTTCCTCGNAGTGCGTCTCGCCTCCGTCCAAAAAAAGAACAAATCTTTGTA 60 consensus_9955#0 ------------------------------------------------------------ consensus_9955#1 CGNAGTCGGCCGGGTCTCGCCGCCTTTTAAAACCCCGGCCCGCCCGCCACCGGCCACCGC 120 consensus_9955#0 --------------------------------------GACACTGACATGGACTGA--GG 20 consensus_9955#1 NTTGGGCCATTGCCCCCCCTCCGAATTGCTTCGCTATAAGTACTCGC-CGGAGTGGCCGC 179 *** * *** ** * consensus_9955#0 AGTAGAAAATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTT 80 consensus_9955#1 CCTGCACCATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTT 239 * * **************************************************** consensus_9955#0 CTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCT 140 consensus_9955#1 CTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCT 299 ************************************************************ consensus_9955#0 TGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGT 200 consensus_9955#1 TGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGT 359 ************************************************************ consensus_9955#0 GTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTACAG 260 consensus_9955#1 GTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTAC-- 417 ********************************************************** consensus_9955#0 GCTCCACCCCAAGGGGGAGGAGGCCACCAAGAACGTCGTCTCCAAGTGGACCGTCGTCAA 320 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 GGGCGTCCTCGTCCAGCAGTCCTTCCAGATCGCCGTCTCCCTCCTCCTCTTCACGATCAT 380 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 TGGTGATGAAAGTGGTACTGTGAGGAAGCAGCCTCCGGCCCTTGTGATAGCATTGCAATT 440 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 CATCATTGCGATGTTTGTTATGGACACATGGCAATACTTCATGCACAGATATATGCATGT 500 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 CAACAAGTTCTTGTACAAGCATGTCCACTCCAAGCACCACACTCTTGTAGTCCCGTATGC 560 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 CTTTGGAGCTCTCTACAACCATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGC 620 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 CCTCTCCTTCCTCATCGGCGGCATGNCTCCTAAGACGGCCATATTCTTCTTCTCGTTTGC 680 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 GACCATCAAGACCATCGATGACCACTGCGGCCTGTGGCTCCCGGGCAACATCCTCCATGT 740 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 CTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTA 800 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 CAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTA 860 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 CACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGC 920 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 AGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAG 980 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 TGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAA 1040 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 CTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTT 1100 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 GTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAA 1160 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCA 1220 consensus_9955#1 ------------------------------------------------------------ consensus_9955#0 TGCCG 1225 consensus_9955#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||