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Oryza sativa
cluster # 9955 cluster # 9955       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9955#0 length = 1225 sequences # 6  
consensus_9955#1 length = 417 sequences # 1  

consensusID : consensus_9955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1225
fasta sequence
                              [GACACTGACATGGACTGAGGAGTAGAAAATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTACAGGCTCCACCCCAAGGGGGAGGAGGCCACCAAGAACGTCGTCTCCAAGTGGACCGTCGTCAAGGGCGTCCTCGTCCAGCAGTCCTTCCAGATCGCCGTCTCCCTCCTCCTCTTCACGATCATTGGTGATGAAAGTGGTACTGTGAGGAAGCAGCCTCCGGCCCTTGTGATAGCATTGCAATTCATCATTGCGATGTTTGTTATGGACACATGGCAATACTTCATGCACAGATATATGCATGTCAACAAGTTCTTGTACAAGCATGTCCACTCCAAGCACCACACTCTTGTAGTCCCGTATGCCTTTGGAGCTCTCTACAACCATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGCCCTCTCCTTCCTCATCGGCGGCATGNCTCCTAAGACGGCCATATTCTTCTTCTCGTTTGCGACCATCAAGACCATCGATGACCACTGCGGCCTGTGGCTCCCGGGCAACATCCTCCATGTCTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]

[+] EMBL CF319323             [GACACTGACATGGACTGAGGAGTAGAAAATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTACAGGCTCCACCCCAAGGGGGAGGAGGCCACCAAGAACGTCGTCTCCAAGTGGACCGTCGTCAAGGGCGTCCTCGTCCAGCAGTCCTTCCAGATCGCCGTCTCCCTCCTCCTCTTCACGATCATTGGTGATGAAAGTGGTACTGTGAGGAAGCAGCCTCCGGCCCTTGTGATAGCATTGCAATTCATCATTGCGATGTTTGTTATGGACACATGGCAATACTTCATGCACAGATATATGCATGTCAACAAGTTCTTGTACAAGCATGTCCACTCCAAGCACCACACTCTTGTAGTCCCGTATGCCTTTGGAGCTCTCTACAACCATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGCCCTCTCCTTCCTCATCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSC659               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGCACCACACTCTTGTAGTCCCGTATGCCTTTGGAGCTCTCTACAACNATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGCCCTCTCCTTNCTCATCGCCNGCATGNCTCCTAAGACGGCCATATTCTTCTTCTCGTTTGCGACCATCAAGACCATCGATGACCACTGCGGCCTGTGGCTCCCGGGCAACATCCTCCATGTCTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAANTTCTCGNAGACCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTNGAGGCGCGCCCGATTA                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CF319324             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CATCAAGACCGTCGATGACCACTGCGG CTGTGGCTCCCGGGCAACATCCTCCATGTCTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAAAa                                                               ]
[+] EMBL AU173531             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATNTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTNTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAA                                                                 ]
[+] EMBL CF315844             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]
[-] EMBL CF315845             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTGGCAGAGCAAAGCAAGACCGATTAAGGTCAATTTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTTTTCCTGCCAGGGCACAAAGGTCATGTCATGTTGTAGTAATGCCTGATTTTTTTAAATACATTTGTGTTGGTAGTCAGTAAAAGTTTTTTTCATGTTTAAAAACCCAAACCCTTTTGTGGGGGATGCCATTTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTTAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                         ]


>consensus_9955#0 GACACTGACATGGACTGAGGAGTAGAAAATATCCACTCACCTCGGAGCAGCAGCACAAGA ATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTT GAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGC ACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCC ATGGGGATGGACGACTACAGGCTCCACCCCAAGGGGGAGGAGGCCACCAAGAACGTCGTC TCCAAGTGGACCGTCGTCAAGGGCGTCCTCGTCCAGCAGTCCTTCCAGATCGCCGTCTCC CTCCTCCTCTTCACGATCATTGGTGATGAAAGTGGTACTGTGAGGAAGCAGCCTCCGGCC CTTGTGATAGCATTGCAATTCATCATTGCGATGTTTGTTATGGACACATGGCAATACTTC ATGCACAGATATATGCATGTCAACAAGTTCTTGTACAAGCATGTCCACTCCAAGCACCAC ACTCTTGTAGTCCCGTATGCCTTTGGAGCTCTCTACAACCATCCCCTTGAGGGCCTCATC CTGGACACCATCGGCGGCGCCCTCTCCTTCCTCATCGGCGGCATGNCTCCTAAGACGGCC ATATTCTTCTTCTCGTTTGCGACCATCAAGACCATCGATGACCACTGCGGCCTGTGGCTC CCGGGCAACATCCTCCATGTCTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCAC CAGCTCTATGGCAACAAGTACAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATC CTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGC CCGATTAAGCTCAATGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCA GAGTAAGGCCAATTAAGCAGTGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTA GTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGT TCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAG CATTGTGTTAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAACCCCTGTCATGCCG



consensusID : consensus_9955#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence
                              [CTTTCNTTCTTTCCTCGNAGTGCGTCTCGCCTCCGTCCAAAAAAAGAACAAATCTTTGTACGNAGTCGGCCGGGTCTCGCCGCCTTTTAAAACCCCGGCCCGCCCGCCACCGGCCACCGCNTTGGGCCATTGCCCCCCCTCCGAATTGCTTCGCTATAAGTACTCGCCGGAGTGGCCGCCCTGCACCATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTAC]

[+] EMBL AU173530             [CTTTCNTTCTTTCCTCGNAGTGCGTCTCGCCTCCGTCCAAAAAAAGAACAAATCTTTGTACGNAGTCGGCCGGGTCTCGCCGCCTTTTAAAACCCCGGCCCGCCCGCCACCGGCCACCGCNTTGGGCCATTGCCCCCCCTCCGAATTGCTTCGCTATAAGTACTCGCCGGAGTGGCCGCCCTGCACCATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTAC]


>consensus_9955#1 CTTTCNTTCTTTCCTCGNAGTGCGTCTCGCCTCCGTCCAAAAAAAGAACAAATCTTTGTA CGNAGTCGGCCGGGTCTCGCCGCCTTTTAAAACCCCGGCCCGCCCGCCACCGGCCACCGC NTTGGGCCATTGCCCCCCCTCCGAATTGCTTCGCTATAAGTACTCGCCGGAGTGGCCGCC CTGCACCATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTC TTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTT GAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTG TACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9955#0      ------------------------------------------------------------
consensus_9955#1      CTTTCNTTCTTTCCTCGNAGTGCGTCTCGCCTCCGTCCAAAAAAAGAACAAATCTTTGTA 60
                                                                                  

consensus_9955#0      ------------------------------------------------------------
consensus_9955#1      CGNAGTCGGCCGGGTCTCGCCGCCTTTTAAAACCCCGGCCCGCCCGCCACCGGCCACCGC 120
                                                                                  

consensus_9955#0      --------------------------------------GACACTGACATGGACTGA--GG 20
consensus_9955#1      NTTGGGCCATTGCCCCCCCTCCGAATTGCTTCGCTATAAGTACTCGC-CGGAGTGGCCGC 179
                                                               ***  *  *** **   * 

consensus_9955#0      AGTAGAAAATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTT 80
consensus_9955#1      CCTGCACCATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTT 239
                        *  *  ****************************************************

consensus_9955#0      CTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCT 140
consensus_9955#1      CTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCT 299
                      ************************************************************

consensus_9955#0      TGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGT 200
consensus_9955#1      TGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGT 359
                      ************************************************************

consensus_9955#0      GTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTACAG 260
consensus_9955#1      GTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTAC-- 417
                      **********************************************************  

consensus_9955#0      GCTCCACCCCAAGGGGGAGGAGGCCACCAAGAACGTCGTCTCCAAGTGGACCGTCGTCAA 320
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      GGGCGTCCTCGTCCAGCAGTCCTTCCAGATCGCCGTCTCCCTCCTCCTCTTCACGATCAT 380
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      TGGTGATGAAAGTGGTACTGTGAGGAAGCAGCCTCCGGCCCTTGTGATAGCATTGCAATT 440
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      CATCATTGCGATGTTTGTTATGGACACATGGCAATACTTCATGCACAGATATATGCATGT 500
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      CAACAAGTTCTTGTACAAGCATGTCCACTCCAAGCACCACACTCTTGTAGTCCCGTATGC 560
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      CTTTGGAGCTCTCTACAACCATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGC 620
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      CCTCTCCTTCCTCATCGGCGGCATGNCTCCTAAGACGGCCATATTCTTCTTCTCGTTTGC 680
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      GACCATCAAGACCATCGATGACCACTGCGGCCTGTGGCTCCCGGGCAACATCCTCCATGT 740
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      CTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTA 800
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      CAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTA 860
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      CACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGC 920
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      AGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAG 980
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      TGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAA 1040
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      CTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTT 1100
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      GTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAA 1160
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCA 1220
consensus_9955#1      ------------------------------------------------------------
                                                                                  

consensus_9955#0      TGCCG 1225
consensus_9955#1      -----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)