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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1225 fasta sequence
[GACACTGACATGGACTGAGGAGTAGAAAATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTACAGGCTCCACCCCAAGGGGGAGGAGGCCACCAAGAACGTCGTCTCCAAGTGGACCGTCGTCAAGGGCGTCCTCGTCCAGCAGTCCTTCCAGATCGCCGTCTCCCTCCTCCTCTTCACGATCATTGGTGATGAAAGTGGTACTGTGAGGAAGCAGCCTCCGGCCCTTGTGATAGCATTGCAATTCATCATTGCGATGTTTGTTATGGACACATGGCAATACTTCATGCACAGATATATGCATGTCAACAAGTTCTTGTACAAGCATGTCCACTCCAAGCACCACACTCTTGTAGTCCCGTATGCCTTTGGAGCTCTCTACAACCATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGCCCTCTCCTTCCTCATCGGCGGCATGNCTCCTAAGACGGCCATATTCTTCTTCTCGTTTGCGACCATCAAGACCATCGATGACCACTGCGGCCTGTGGCTCCCGGGCAACATCCTCCATGTCTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]
[+] EMBL CF319323 [GACACTGACATGGACTGAGGAGTAGAAAATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTACAGGCTCCACCCCAAGGGGGAGGAGGCCACCAAGAACGTCGTCTCCAAGTGGACCGTCGTCAAGGGCGTCCTCGTCCAGCAGTCCTTCCAGATCGCCGTCTCCCTCCTCCTCTTCACGATCATTGGTGATGAAAGTGGTACTGTGAGGAAGCAGCCTCCGGCCCTTGTGATAGCATTGCAATTCATCATTGCGATGTTTGTTATGGACACATGGCAATACTTCATGCACAGATATATGCATGTCAACAAGTTCTTGTACAAGCATGTCCACTCCAAGCACCACACTCTTGTAGTCCCGTATGCCTTTGGAGCTCTCTACAACCATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGCCCTCTCCTTCCTCATCGGCG ]
[+] EMBL OSC659 [ AAGCACCACACTCTTGTAGTCCCGTATGCCTTTGGAGCTCTCTACAACNATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGCCCTCTCCTTNCTCATCGCCNGCATGNCTCCTAAGACGGCCATATTCTTCTTCTCGTTTGCGACCATCAAGACCATCGATGACCACTGCGGCCTGTGGCTCCCGGGCAACATCCTCCATGTCTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAANTTCTCGNAGACCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTNGAGGCGCGCCCGATTA ]
[-] EMBL CF319324 [ CATCAAGACCGTCGATGACCACTGCGG CTGTGGCTCCCGGGCAACATCCTCCATGTCTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAAAa ]
[+] EMBL AU173531 [ AACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATNTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTNTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAA ]
[+] EMBL CF315844 [ TGTGGCAGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCG]
[-] EMBL CF315845 [ GTGGCAGAGCAAAGCAAGACCGATTAAGGTCAATTTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTTTTCCTGCCAGGGCACAAAGGTCATGTCATGTTGTAGTAATGCCTGATTTTTTTAAATACATTTGTGTTGGTAGTCAGTAAAAGTTTTTTTCATGTTTAAAAACCCAAACCCTTTTGTGGGGGATGCCATTTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTTAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_9955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence
[CTTTCNTTCTTTCCTCGNAGTGCGTCTCGCCTCCGTCCAAAAAAAGAACAAATCTTTGTACGNAGTCGGCCGGGTCTCGCCGCCTTTTAAAACCCCGGCCCGCCCGCCACCGGCCACCGCNTTGGGCCATTGCCCCCCCTCCGAATTGCTTCGCTATAAGTACTCGCCGGAGTGGCCGCCCTGCACCATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTAC]
[+] EMBL AU173530 [CTTTCNTTCTTTCCTCGNAGTGCGTCTCGCCTCCGTCCAAAAAAAGAACAAATCTTTGTACGNAGTCGGCCGGGTCTCGCCGCCTTTTAAAACCCCGGCCCGCCCGCCACCGGCCACCGCNTTGGGCCATTGCCCCCCCTCCGAATTGCTTCGCTATAAGTACTCGCCGGAGTGGCCGCCCTGCACCATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9955#0 ------------------------------------------------------------
consensus_9955#1 CTTTCNTTCTTTCCTCGNAGTGCGTCTCGCCTCCGTCCAAAAAAAGAACAAATCTTTGTA 60
consensus_9955#0 ------------------------------------------------------------
consensus_9955#1 CGNAGTCGGCCGGGTCTCGCCGCCTTTTAAAACCCCGGCCCGCCCGCCACCGGCCACCGC 120
consensus_9955#0 --------------------------------------GACACTGACATGGACTGA--GG 20
consensus_9955#1 NTTGGGCCATTGCCCCCCCTCCGAATTGCTTCGCTATAAGTACTCGC-CGGAGTGGCCGC 179
*** * *** ** *
consensus_9955#0 AGTAGAAAATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTT 80
consensus_9955#1 CCTGCACCATATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTT 239
* * ****************************************************
consensus_9955#0 CTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCT 140
consensus_9955#1 CTTGCGTTCTTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCT 299
************************************************************
consensus_9955#0 TGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGT 200
consensus_9955#1 TGAGAGGATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGT 359
************************************************************
consensus_9955#0 GTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTACAG 260
consensus_9955#1 GTACTGGCTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTAC-- 417
**********************************************************
consensus_9955#0 GCTCCACCCCAAGGGGGAGGAGGCCACCAAGAACGTCGTCTCCAAGTGGACCGTCGTCAA 320
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 GGGCGTCCTCGTCCAGCAGTCCTTCCAGATCGCCGTCTCCCTCCTCCTCTTCACGATCAT 380
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 TGGTGATGAAAGTGGTACTGTGAGGAAGCAGCCTCCGGCCCTTGTGATAGCATTGCAATT 440
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 CATCATTGCGATGTTTGTTATGGACACATGGCAATACTTCATGCACAGATATATGCATGT 500
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 CAACAAGTTCTTGTACAAGCATGTCCACTCCAAGCACCACACTCTTGTAGTCCCGTATGC 560
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 CTTTGGAGCTCTCTACAACCATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGC 620
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 CCTCTCCTTCCTCATCGGCGGCATGNCTCCTAAGACGGCCATATTCTTCTTCTCGTTTGC 680
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 GACCATCAAGACCATCGATGACCACTGCGGCCTGTGGCTCCCGGGCAACATCCTCCATGT 740
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 CTTCTTCAGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTA 800
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 CAACTTCTCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTA 860
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 CACTCTTGAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGC 920
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 AGAGCAGAGCAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAG 980
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 TGTTCTTCCTGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAA 1040
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 CTACATTTGTGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTT 1100
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 GTGGGGGATGCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTTAAAAAGAAAAA 1160
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCA 1220
consensus_9955#1 ------------------------------------------------------------
consensus_9955#0 TGCCG 1225
consensus_9955#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||