These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [AAGGGTTTAATTCTGTCTGTATACTATATACCATATCTTACCAGACTAGATCTTGCTTAGCTAGCTAGCGAATTAGTGTCTTGTAGCCAGTTATTACGTACTCGATCGTGTGTGGATTACGTTGACTAATTAATCGCGAGTTCGATCGCGATGGCACTGTTGTTCGTCAAGTTCGTTGTACTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACTGCGGCGGCGGCGGCGGAGGCNNCNCCTNCCNCCTCGGCCCGCCGCCGCCGCGGGCGCGGGCGCGCTNCAGCNTCGGCGNCGNGGGCCCGGCGCGGNGGCAGACCTGCNGGCNCCCCGCCTGACTCGCCGCCGTGGACGCGTTCCTCCTGCCGGATCTGGTGGCTACCTGCGTTGTCGGCTCGGTCACCCGNGGTTGGCGTCCTTCACGGTGGGGTGTCGGTTGTCTGGCGGTTTCTTTCGTGTTCGAGACGTCGCAGTTGACGTTTCTTACAATCCATGAATTCACTGTTGTTCCTGCCTCTGTCTTCCTACATTGACTGTCCCGTT] [+] EMBL CA758480 [AAGGGTTTAATTCTGTCTGTATACTATATACCATATCTTACCAGACTAGATCTTGCTTAGCTAGCTAGCGAATTAGTGTCTTGTAGCCAGTTATTACGTACTCGATCGTGTGTGGATTACGTTGACTAATTAATCGCGAGTTCGATCGCGATGGCACTGTTGTTCGTCAAGTTCGTTGTACTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACTGCGGCGGCGGCGGCGGAGGCNNCNCCTNCCNCCTCGGCCCGCCGCCGCCGCGGGCGCGGGCGCGCTNCAGCNTCGGCGNCGNGGGCCCGGCGCGGNGGCAGACCTGCNGGCNCCCCGCCTGACTCGCCGCCGTGGACGCGTTCCTCCTGCCGGATCTGGTGGCTACCTGCGTTGTCGGCTCGGTCACCCGNGGTTGGCGTCCTTCACGGTGGGGTGTCGGTTGTCTGGCGGTTTCTTTCGTGTTCGAGACGTCGCAGTTGACGTTTCTTACAATCCATGAATTCACTGTTGTTCCTGCCTCTGTCTTCCTACATTGACTGTCCCGTT] consensusID : consensus_996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [TATACTATACCATATCTTACCAGACTAGATCTTGCTTAGCTAGCTAGCGAATTAGTGTCGTCTTCTAGCTAGTTATTACGNATTCTTGTGTNGATTACGTTGACTAATTAATGGCGAATTCGATCGCGATGGCACTGTTGTTCGTCAAGTCGTTCGTTGTACTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACGGCGGCGGCGGCGCCTTCGNCATGGGCCTGCCCTNGNNGTNGCCGACGGTGAACTTCAGCATCGGCGTGCAGGGCATGGTGTGNTGCAAGACCTGCAGGGACCNCGGCT] [+] EMBL OS0143A [TATACTATACCATATCTTACCAGACTAGATCTTGCTTAGCTAGCTAGCGAATTAGTGTCGTCTTCTAGCTAGTTATTACGNATTCTTGTGTNGATTACGTTGACTAATTAATGGCGAATTCGATCGCGATGGCACTGTTGTTCGTCAAGTCGTTCGTTGTACTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACGGCGGCGGCGGCGCCTTCGNCATGGGCCTGCCCTNGNNGTNGCCGACGGTGAACTTCAGCATCGGCGTGCAGGGCATGGTGTGNTGCAAGACCTGCAGGGACCNCGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_996#0 AAGGGTTTAATTCTGTCTGTATACTATATACCATATCTTACCAGACTAGATCTTGCTTAG 60 consensus_996#1 -------------------TATACTATA--CCATATCTTACCAGACTAGATCTTGCTTAG 39 ********* ****************************** consensus_996#0 CTAGCTAGCGAATTAGTGTC---TTGTAGCCAGTTATTACGTACTCGATCGTGTGTGGAT 117 consensus_996#1 CTAGCTAGCGAATTAGTGTCGTCTTCTAGCTAGTTATTACGNAT----TCTTGTGTNGAT 95 ******************** ** **** ********** * ** ***** *** consensus_996#0 TACGTTGACTAATTAATCGCGAGTTCGATCGCGATGGCACTGTTGTTCGTCAAGT---TC 174 consensus_996#1 TACGTTGACTAATTAATGGCGAATTCGATCGCGATGGCACTGTTGTTCGTCAAGTCGTTC 155 ***************** **** ******************************** ** consensus_996#0 GTTGTACTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACTGCGGCGGCGGCGGCGGAGGC 234 consensus_996#1 GTTGTACTCTCGCTCGCCGCCGTGCTGCTCGCTCTCGACGGCGGCGGCGG---------- 205 *************************************** ********** consensus_996#0 NNCNCCTNCCNCCTCGGCCCGCCGCCGCCGCGGGCGCGGGCGCGCTNCAGCNTCGGCGNC 294 consensus_996#1 --CGCCTTCGNCATGGGCCTGCCCTNGNNGTNGCCGACGGTGAACTTCAGCATCGGCGTG 263 * *** * ** * **** *** * * * ** ** * ** **** ****** consensus_996#0 GNGGGCCCGGCGCGGNGGCAGACCTGCNGGCNCCCCGCCTGACTCGCCGCCGTGGACGCG 354 consensus_996#1 CAGGGCATGGTGTGNTGCAAGACCTGCAGGGACCNCGGCT-------------------- 303 **** ** * * * ******** ** ** ** ** consensus_996#0 TTCCTCCTGCCGGATCTGGTGGCTACCTGCGTTGTCGGCTCGGTCACCCGNGGTTGGCGT 414 consensus_996#1 ------------------------------------------------------------ consensus_996#0 CCTTCACGGTGGGGTGTCGGTTGTCTGGCGGTTTCTTTCGTGTTCGAGACGTCGCAGTTG 474 consensus_996#1 ------------------------------------------------------------ consensus_996#0 ACGTTTCTTACAATCCATGAATTCACTGTTGTTCCTGCCTCTGTCTTCCTACATTGACTG 534 consensus_996#1 ------------------------------------------------------------ consensus_996#0 TCCCGTT 541 consensus_996#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||