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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 778 fasta sequence
[GNGGACGAGACAAGGGGGACTTAATCTTTTCCTTCATCTCTCCCTTCCTCTTCACTATTCCAACAGTGCAGATCTAGAGGGAAGCAATGGATAGAAACACCATGGGACATAGCAACTTATTAGAGGAATCGAAGGAACCAGTCAAGCATACGAAGGGAAAACAAGAAGATAGTTTTGGAGAGACAGCAAAGAATGATCATGTTGATCATTCCGATCAA-GAATCCTC-AACTTACCTGATCTAGGAAAGGA--AAAAC-GTACCAAAAGATTTGGAAGCTCTAGCT-GGGGCTAAAAAGGATGTACCTAAGGAAGC-GGAAGTTATTGAAATGAATTCC-ATGATTTAGACAACAAGATGGGGAGGAACA-TTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAACAAAGAAATCGTCTAATCGTAATGTGCAAGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACAACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAAGGGGG-GCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTG-TG-C-ATTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTT-GCCGATGTTTTTGAATATGCTTCCTCAGTAGCCA-CCTTGAGATGTTAGCATTTAGTTTTAAAGTTGTATTTTCATTGTCAAGTACTTAAGTGCTTTATTTATCAAATCAAGTAATTTTGCAAAAA]
[+] EMBL CA764012 [GNGGACGAGACAAGGGGGACTTAATCTTTTCCTTCATCTCTCCCTTCCTCTTCACTATTCCAACAGTGCAGATCTAGAGGGAAGCAATGGATAGAAACACCATGGGACATAGCAACTTATTAGAGGAATCGAAGGAACCAGTCAAGCATACGAAGGGAAAACAAGAAGATAGTTTTGGAGAGACAGCAAAGAATGATCATGTTGATCATTCCGATCAA GAATCCTCAAACTTACCTGATCTAGG AAGGA AAAAC GTACCAAAAGATTTGGAAGCTCTAGCT GGGGCTAAAAAGGATGTACCTAAGGAAGC GGAAGTTATTGAAATGAATTCCAATGATTTAGACAACAAGATGGGGAGGAACA TTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAACAAAGAAATCGTCTAATCGTAATGTGCAAGGCCACGGAACTAGTAGGTCCATGAAAGGAAGGACAACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAAGGGGG GCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTG TG CAATTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTTGGCCGATGNTTTTGAATATGCTTCCTCAGTAGCCA CCTTGAGATGGTAGCATTTAGTTTTAAAGGTGNATTTTCATTGNCAAGTACTTAAGTGCTTTATTTATCAAATCAAGTAATT ]
[+] EMBL BI796974 [ TTGATCATTCCGATCAAGGAATCCTC AACTTACCTGATCTAGGAAAGCA AAAAC GTACCAAAAGATTTGGAAGCTCTAGCT GGGGCTAAAAAGGATGTACCTAAGGAAGC GGAAGTTATTGAAATGAATTCC ATGATTTAGACAACAAGATGGGGAGGAACA TTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAACAAAGAAATCGTCTAATCGTAATGTGCAAGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACAACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAAGGGGGCGCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTG TG C ATTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTT GCCGATGTTTTTGAATATGCTTCCTCAGTA CCA CCTTGAGATGTTA CATTTAGTTTTAAAGTTGTATTTTCATTGTCAAGTACTTAAGTGCTTTATTTATCAAATCAAGTAATTTTCCAAAA ]
[+] EMBL BI796128 [ tcCCTC AACTTACCTGATCTAGGAAAAGAAGAAAACGGTACC AAAGATTT GAAGCTCTAGCT GGGGCTAAAAAGGATGTACCTAAGGAAGC GGAAGTTATTGAAATGAATTCCAATGATTTAGAC ACAAGATGGGGAGGAACACTTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAACCAAGAAATCGTCTAATCGTAATGTGCAAGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACCACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAA GGGG GCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTG T C ATTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTT GCCGATGTTTTTGAATATGCTTCCTCAGTAGCCACCCTTGAGATGTTAGCATTTAGTTTTAAAGTTGTATTTTCATTGTCAAGTACTTAAGTGCTTTATTTATCAAATCAAGTAATTTTGCAAAA ]
[+] EMBL BI795178 [ GAAGCTCTA CTGGGGGCTAAAAAGGATGTACCTAAGGAA C GGAAGTTATTGAAATGAATTCC ATGATTTAGAC AC AGATGGGGAGGAACA TTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAACCAAGAAATCGTCTAATCGTAATGTGC AGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACCACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAAGGGGG GCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTGCCGCC ATTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTT GCCGATGTTTTTGAATATGCTTCCTCAGTAGCCACCCTTGAGATGTTAGCATTTAGTTTTAAAGTTGTATTTTCATTGTCAAGTACTTAAGTGCTTTATTTATC AATCAAGTAATTTTGCAAAAA]
[+] EMBL BI798621 [ GGGCTAAAAAGGATGTACCTAAGGAAGCGGGAAGTTATTGAAATGAATTCC ATGATTTAGACAACAAGATGGGGAGGAACA TTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAAC AAGAAATCGTCTAATCGTAATGTGCAAGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACAACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAAGGGGG GCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTCTGAATATTG TG C ATTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTT GCCGATGTTTTTGAATATGCTTCCTCAGTAGCCA CCTTGAGATGTTAGCATTTAGTTTTAAAGTTGTATTTTCATTGTCAAGTACTTAAGTGCTTTATTTATCAAATCAAGTAATTTTGCAAAA ]
[+] EMBL AA749556 [ ACGGAACTAGTAGGTCCATGAAAGGAAGGACAACAGAACTAACTCCAGATCCTACTGAATACGCAACGGGAAGGGGG GCAACCAGACTCACACTTCCTCACGGTTTTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAG TTCTGAATA TG TG C A TG TGCT GAGT ]
consensusID : consensus_9962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[CAAGGGGGCTTTTCCTCTTCACTATTTAAACAAAGCAGATCTAGAGGGAAGCCATGGATAGGGACACCTTGGGTCATAGCATCTTATTAGAGGAATCGAAGGAACCAATCAAGCAAATGAAGGGAAAGAAAAATGTACCAAAAGATTTGGAAGCTCTAGCCAGGGCTACAAAGAATGTACCCGAGGATGTGGAAATTACTGAAATAAAATCCAATGATTTAGACAACAAGACGGGGAGGAACATTGGAAAGAGAAATCGACAAGATGACAGTGGGAGTAAAACAAAGGATCTAGTAGGTCCGTGAAAGGAAGGACAATAGAGCTAACTCCAGATCCTACTGAATACCCAAGGGGAAGGGGGCCAACTAGACTCGAACTTCCACATGGTTTTATGTAGCTGTTATTGGAGGATTTGATTTGTTAAGAATTAGTGTCTCCACTAAAGTTTCTGAATATTGTGCAATTGTTGCTGGAGTATGTGACTTCTTAAGAATTGGTGTCTTTGCTGATGTTTTTGAATATGCTATCTCAGTAGACACCTTGAGATGTTAGCATTTGGTTTTAAAGTTATATTTTCATTGTCAAGTACTTAAGTGATTTATTTGTCAAATCAAGTACT]
[+] EMBL CA764366 [CAAGGGGGCTTTTCCTCTTCACTATTTAAACAAAGCAGATCTAGAGGGAAGCCATGGATAGGGACACCTTGGGTCATAGCATCTTATTAGAGGAATCGAAGGAACCAATCAAGCAAATGAAGGGAAAGAAAAATGTACCAAAAGATTTGGAAGCTCTAGCCAGGGCTACAAAGAATGTACCCGAGGATGTGGAAATTACTGAAATAAAATCCAATGATTTAGACAACAAGACGGGGAGGAACATTGGAAAGAGAAATCGACAAGATGACAGTGGGAGTAAAACAAAGGATCTAGTAGGTCCGTGAAAGGAAGGACAATAGAGCTAACTCCAGATCCTACTGAATACCCAAGGGGAAGGGGGCCAACTAGACTCGAACTTCCACATGGTTTTATGTAGCTGTTATTGGAGGATTTGATTTGTTAAGAATTAGTGTCTCCACTAAAGTTTCTGAATATTGTGCAATTGTTGCTGGAGTATGTGACTTCTTAAGAATTGGTGTCTTTGCTGATGTTTTTGAATATGCTATCTCAGTAGACACCTTGAGATGTTAGCATTTGGTTTTAAAGTTATATTTTCATTGTCAAGTACTTAAGTGATTTATTTGTCAAATCAAGTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9962#0 GNGGACGAGACAAGGGGGACTTAATCTTTTCCTTCATCTCTCCCTTCCTCTTCACTATTC 60
consensus_9962#1 ---------------------------------CAAGGGGGCTTTTCCTCTTCACTATTT 27
* * ***************
consensus_9962#0 CAACAGTGCAGATCTAGAGGGAAGCAATGGATAGAAACACCATGGGACATAGCAACTTAT 120
consensus_9962#1 AAACAAAGCAGATCTAGAGGGAAGCCATGGATAGGGACACCTTGGGTCATAGCATCTTAT 87
**** ****************** ******** ***** **** ******* *****
consensus_9962#0 TAGAGGAATCGAAGGAACCAGTCAAGCATACGAAGGGAAAACAAGAAGATAGTTTTGGAG 180
consensus_9962#1 TAGAGGAATCGAAGGAACCAATCAAGCAAATGAAGGGAAA-------------------- 127
******************** ******* * *********
consensus_9962#0 AGACAGCAAAGAATGATCATGTTGATCATTCCGATCAAGAATCCTCAACTTACCTGATCT 240
consensus_9962#1 ------------------------------------------------------------
consensus_9962#0 AGGAAAGGAAAAACGTACCAAAAGATTTGGAAGCTCTAGCTGGGGCTAAAAAGGATGTAC 300
consensus_9962#1 -------GAAAAATGTACCAAAAGATTTGGAAGCTCTAGCCAGGGCTACAAAGAATGTAC 180
****** ************************** ****** **** ******
consensus_9962#0 CTAAGGAAGCGGAAGTTATTGAAATGAATTCCA-TGATTTAGACAACAAGATGGGGAGGA 359
consensus_9962#1 CCGAGGATGTGGAAATTACTGAAATAAAATCCAATGATTTAGACAACAAGACGGGGAGGA 240
* **** * **** *** ****** ** **** ***************** ********
consensus_9962#0 ACATTGGAAAGAGAAATCGTCAAGATGATAATGGGAGTAAAACAAAGAAATCGTCTAATC 419
consensus_9962#1 ACATTGGAAAGAGAAATCGACAAGATGACAGTGGGAGTAAAACAAAG------------- 287
******************* ******** * ****************
consensus_9962#0 GTAATGTGCAAGGTCACGGAACTAGTAGGTCCATGAAAGGAAGGACAACAGAACTAACTC 479
consensus_9962#1 ------------------GATCTAGTAGGTCCGTGAAAGGAAGGACAATAGAGCTAACTC 329
** *********** *************** *** *******
consensus_9962#0 CAGATCCTACTGAATACGCAACGGGAAGGGGGGCAACCAGACTCACACTTCCTCACGGTT 539
consensus_9962#1 CAGATCCTACTGAATACCCAAGGGGAAGGGGGCCAACTAGACTCGAACTTCCACATGGTT 389
***************** *** ********** **** ****** ****** ** ****
consensus_9962#0 TTGTGTAGCTGTTATTGGAGGATTTGATATGTTAAGAATTAGTGTCTGCGCTGAAGTTTC 599
consensus_9962#1 TTATGTAGCTGTTATTGGAGGATTTGATTTGTTAAGAATTAGTGTCTCCACTAAAGTTTC 449
** ************************* ****************** * ** *******
consensus_9962#0 TGAATATTGTGCA-TTGTTGCTGGAGTTTGTAACTTCTTAAGAATTGGTGTCTTTGCCGA 658
consensus_9962#1 TGAATATTGTGCAATTGTTGCTGGAGTATGTGACTTCTTAAGAATTGGTGTCTTTGCTGA 509
************* ************* *** ************************* **
consensus_9962#0 TGTTTTTGAATATGCTTCCTCAGTAGCCACCTTGAGATGTTAGCATTTAGTTTTAAAGTT 718
consensus_9962#1 TGTTTTTGAATATGCTATCTCAGTAGACACCTTGAGATGTTAGCATTTGGTTTTAAAGTT 569
**************** ******** ********************* ***********
consensus_9962#0 GTATTTTCATTGTCAAGTACTTAAGTGCTTTATTTATCAAATCAAGTAATTTTGCAAAAA 778
consensus_9962#1 ATATTTTCATTGTCAAGTACTTAAGTGATTTATTTGTCAAATCAAGTACT---------- 619
************************** ******* ************ *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||