|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9968#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1696 fasta sequence
[GAACATCTATGGACAGACGCCATTGATGCAAGCTTGCCGGTTCGGTCACTGGGAGGTGGTTCAGACGCTGCTGGTTTTCAGATGCAATGTACAGTAAACTGATTAGCTCCTGCACTTCAGTTAATTGCAACGATTAATCAGTAAATTAGAAATTAACTTTTGTTTTTACTGAAGGTGTGGAGGGTGGAGAACCTGAGTGGGCGGACGGCGCTGCACATGGCGGCGGCCGGCGGACATGTCAAGTGCGTCAGGCTGCTGGTGGCGGACGCCGCCGGCGACAGAGACGGGTACGTGAACAAGGCGGCGAACGGCGGCGTGACGGCGCTGCACCTGGCGGCGCTGCACGGGCACGTCGAGTGCGTCCACCTGCTCATCGACGAGCGCGCCAGCCTCGCCGCGCAGACGCTGCCCTGCGCCGCGCCGCCCATGGCATCCATCGGCGCCGGCAGCACGCCGCTGCACTACGCCGCGTGCGGCGGCGAGGTCAAGTGCTGTCAGATACTCGTGTCAAGAGGAGCAGACAGAACAGCCATCAATTGCAATG----GGTGGCTCCCAATCGACGCAGCCAGAATCTGGGGCTGCAACTGGCTTGAACACGTCCTCTCCCCCAAGTCGCATCTTCCGATCCCCAAGTTCCCTCCTTCCGGCTACCTCTCCCAGCCACTCCCCAGCCTCATCGCCATTGCAAGGTACTTTAACTGATCGCTGATCACCAATGCAATTCTGCAAATTCAATGTGATCTGATCAGTGATATTCAGAACTTGAAATGCACTGAGTTGGAGTGGTGTTTTGTGTGTTGTTTTGTACTATGGTTTTGTTTGGTTTGGTGAGATTTGCAGGGAGCAAGGTCTGAACTTGTCTTCGGAGGTTTCTGATGGCTTCGATGAAGGAGCAGATGCCTGCGCCGTCTGTCTTGAGAGGCCCTGCACTGTAGCTGCTGAAGGTTGCGATCACGAGCTGTGCGTGAAATGCGCGATGGATCTCTGCTCGGTGATCAAATCCTACGACTCGGCGGGGATCGCCGGCGAGATCCCGTGCCCGCTCTGCCGGACCGGGATAGCCTCCTTCCGGACAACCGCCGCCCCGCCGCCGCCGAGCCTCGCCGGGTCGCCCGCCCGCCGCAGCCGCCGCAACAACTCCGGCGGCGGCGGCGGCGAGCACGAGGCCTCCAACTCCGGCGGCAGCGAGAAGGGATACGGCAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTCTACTACGCGCCGCCCTTCGCGCCTTCTGCCATCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTTATTTTTTTTGCAAAAAAAAAAAAAAAGG]
[+] EMBL CB675001 [GAACATCTATGGACAGACGCCATTGATGCAAGCTTGCCGGTTCGGTCACTGGGAGGTGGTTCAGACGCTGCTGGTTTTCAGATGCAATGTACAGTAAACTGATTAGCTCCTGCACTTCAGTTAATTGCAACGATTAATCAGTAAATTAGAAATTAACTTTTGTTTTTACTGAAGGTGTGGAGGGTGGAGAACCTGAGTGGGCGGACGGCGCTGCACATGGCGGCGGCCGGCGGACATGTCAAGTGCGTCAGGCTGCTGGTGGCGGACGCCGCCGGCGACAGAGACGGGTACGTGAACAAGGCGGCGAACGGCGGCGTGACGGCGCTGCACCTGGCGGCGCTGCACGGGCACGTCGAGTGCGTCCACCTGCTCATCGACGAGCGCGCCAGCCTCGCCGCGCAGACGCTGCCCTGCGCCGCGCCGCCCATGGCATCCATCGGCGCCGGCAGCACGCCGCTGCACTACGCCGCGTGCGGCGGCGAGGTCAAGTGCTGTCAGATACTCGTGTCAAGAGGAGCAGACAGAACAGCCATCAATTGCAATG GGTGGCTCCCAATCGACGCAGCCAGAATCTGGGGCTGCAACTGGCTTGAACACGTCCTCTCCCCCAAGTCGCATCTTCCGATCCCCAAGTTCCCTCCTTCCGGCTACCTCTCCCAGCCACTCCCCAGCCTCATCGCCATTGCAAGGTACTTTAACTGATCGCTGATCACCAATGCAATTCTGCAAATTCAATGTGATCTGATCAGTGATATTCAGAACTTGAAATGCACTGAGTTGGAGTGGTGTTTTGTGTGTTGT ]
[+] EMBL AK108566 [ GGCGGACATGTCAAGTGCGTCAGGCTGCTGGTGGCGGACGCCGCCGGCGACAGAGACGGGTACGTGAACAAGGCGGCGAACGGCGGCGTGACGGCGCTGCACCTGGCGGCGCTGCACGGGCACGTCGAGTGCGTCCACCTGCTCATCGACGAGCGCGCCAGCCTCGCCGCGCAGACGCTGCCCTGCGCCGCGCCGCCCATGGCATCCATCGGCGCCGGCAGCACGCCGCTGCACTACGCCGCGTGCGGCGGCGAGGTCAAGTGCTGTCAGATACTCGTGTCAAGAGGAGCAGACAGAACAGCCATCAATTGCAATGGTCAGGTGGCTCCCAATCGACGCAGCCAGAATCTGGGGCTGCAACTGGCTTGAACACGTCCTCTCCCCCAAGTCGCATCTTCCGATCCCCAAGTTCCCTCCTTCCGGCTACCTCTCCCAGCCACTCCCCAGCCTCATCGCCATTGCAAGGTACTTTAACTGATCGCTGATCACCAATGCAATTCTGCAAATTCAATGTGATCTGATCAGTGATATTCAGAACTTGAAATGCACTGAGTTGGAGTGGTGTTTTGTGTGTTGTTTTGTACTATGGTTTTGTTTGGTTTGGTGAGATTTGCAGGGAGCAAGGTCTGAACTTGTCTTCGGAGGTTTCTGATGGCTTCGATGAAGGAGCAGATGCCTGCGCCGTCTGTCTTGAGAGGCCCTGCACTGTAGCTGCTGAAGGTTGCGATCACGAGCTGTGCGTGAAATGCGCGATGGATCTCTGCTCGGTGATCAAATCCTACGACTCGGCGGGGATCGCCGGCGAGATCCCGTGCCCGCTCTGCCGGACCGGGATAGCCTCCTTCCGGACAACCGCCGCCCCGCCGCCGCCGAGCCTCGCCGGGTCGCCCGCCCGCCGCAGCCGCCGCAACAACTCCGGCGGCGGCGGCGGCGAGCACGAGGCCTCCAACTCCGGCGGCAGCGAGAAGGGATACGGCAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTCTACTACGCGCCGCCCTTCGCGCCTTCTGCCATCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTG ]
[-] EMBL CB675002 [ CAGATGCCTGCGCCGTCTGTCTTGAGAGGCCCTGCACTGTAGCTGCTGAAGGTTGCGATCACGAGCTGTGCGTGAAATGCGCGATGGATCTCTGCTCGGTGATCAAATCCTACGACTCGGCGGGGATCGCCGGCGAGATCCCGTGCCCGCTCTGCCGGACCGGGATAGCCTCCTTCCGGACAACCGCCGCCCCGCCGCCGCCGAGCCTCGCCGGGTCGCCCGCCCGCCGCAGCCGCCGCAACAACTCCGGCGGCGGCGGCGGCGAGCACGAGGCCTCCAACTCCGGCGGCAGCGAGAAGGGATACGGCAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTCTACTACGCGCCGCCCTTCGCGCCTTCTGCCATCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTTATTTTTTTTG ]
[-] EMBL CB669503 [ AAATGCGCGATGGATCTCTGCTCGGTGATCAAATCCTACGACTCGGCGGGGATCGCCGGCGAGATCCCGTGCCCGCTCTGCCGGACCGGGATAGCCTCCTTCCGGACAACCGCCGCCCCGCCGCCGCCGAGCCTCGCCGGGTCGCCCGCCCGCCGCAGCCGCCGCAACAACTCCGGCGGCGGCGGCGGCGAGCACGAGGCCTCCAACTCCGGCGGCAGCGAGAAGGGATACGGCAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTTTATTACGCGCCGCCCTTCGCGCCTTTTGCCATCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTTATTTGTTTTGCA ]
[-] EMBL CB681921 [ GGATCTCTGCTCGGTGATCAAATCTTACGACTCGGCGGGGATCGCCGGCGAGATCCCGTGCCCGCTCTGCCGGACCGGGATAGCCTCCTTCCGGACAACCGCCGCCCCGCCGCCGCCGAGCCTCGCCGGGTCGCCCGCCCGCCGCAGCCGCCGCAACAACTCCGGCGGCGGCGGCGGCGAGCACGAGGCCTCCAACTCCGGCGGCAGCGAGAAGGGATACGGCAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTTTATTACGCGCCGCCCTTCGCGCCTTCTGCCATCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTCCATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTTATTTTTTTTGCAAAAAAAAAAAAAAAGG]
[+] EMBL CB681920 [ GTCCCCCTCTACTACGCGCCGCCCTTCGCGCCTTCTGCCATCCTGACCTGATCGGACATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAACAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAACACATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTACGAGTGTACATGGGTGATTTGATTTGATCT ]
consensusID : consensus_9968#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[TTCGCGCCTTNTGCCATCTTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTATTTTTTTTGCATTCTATGGTAAATTAAGGCATTCTCTTTTTAAAAAGCT]
[-] EMBL CB638250 [TTCGCGCCTTNTGCCATCTTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTCTTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTCTCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAGCAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATTAGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGGTGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTCTGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTATTTTTTTTGCATTCTATGGTAAATTAAGGCATTCTCTTTTTAAAAAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9968#0 GAACATCTATGGACAGACGCCATTGATGCAAGCTTGCCGGTTCGGTCACTGGGAGGTGGT 60
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 TCAGACGCTGCTGGTTTTCAGATGCAATGTACAGTAAACTGATTAGCTCCTGCACTTCAG 120
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 TTAATTGCAACGATTAATCAGTAAATTAGAAATTAACTTTTGTTTTTACTGAAGGTGTGG 180
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 AGGGTGGAGAACCTGAGTGGGCGGACGGCGCTGCACATGGCGGCGGCCGGCGGACATGTC 240
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 AAGTGCGTCAGGCTGCTGGTGGCGGACGCCGCCGGCGACAGAGACGGGTACGTGAACAAG 300
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 GCGGCGAACGGCGGCGTGACGGCGCTGCACCTGGCGGCGCTGCACGGGCACGTCGAGTGC 360
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 GTCCACCTGCTCATCGACGAGCGCGCCAGCCTCGCCGCGCAGACGCTGCCCTGCGCCGCG 420
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 CCGCCCATGGCATCCATCGGCGCCGGCAGCACGCCGCTGCACTACGCCGCGTGCGGCGGC 480
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 GAGGTCAAGTGCTGTCAGATACTCGTGTCAAGAGGAGCAGACAGAACAGCCATCAATTGC 540
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 AATGGGTGGCTCCCAATCGACGCAGCCAGAATCTGGGGCTGCAACTGGCTTGAACACGTC 600
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 CTCTCCCCCAAGTCGCATCTTCCGATCCCCAAGTTCCCTCCTTCCGGCTACCTCTCCCAG 660
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 CCACTCCCCAGCCTCATCGCCATTGCAAGGTACTTTAACTGATCGCTGATCACCAATGCA 720
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 ATTCTGCAAATTCAATGTGATCTGATCAGTGATATTCAGAACTTGAAATGCACTGAGTTG 780
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 GAGTGGTGTTTTGTGTGTTGTTTTGTACTATGGTTTTGTTTGGTTTGGTGAGATTTGCAG 840
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 GGAGCAAGGTCTGAACTTGTCTTCGGAGGTTTCTGATGGCTTCGATGAAGGAGCAGATGC 900
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 CTGCGCCGTCTGTCTTGAGAGGCCCTGCACTGTAGCTGCTGAAGGTTGCGATCACGAGCT 960
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 GTGCGTGAAATGCGCGATGGATCTCTGCTCGGTGATCAAATCCTACGACTCGGCGGGGAT 1020
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 CGCCGGCGAGATCCCGTGCCCGCTCTGCCGGACCGGGATAGCCTCCTTCCGGACAACCGC 1080
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 CGCCCCGCCGCCGCCGAGCCTCGCCGGGTCGCCCGCCCGCCGCAGCCGCCGCAACAACTC 1140
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 CGGCGGCGGCGGCGGCGAGCACGAGGCCTCCAACTCCGGCGGCAGCGAGAAGGGATACGG 1200
consensus_9968#1 ------------------------------------------------------------
consensus_9968#0 CAGCATCGACCCCGACGCCGGCGCCGTCGTCCCCCTCTACTACGCGCCGCCCTTCGCGCC 1260
consensus_9968#1 ----------------------------------------------------TTCGCGCC 8
********
consensus_9968#0 TTCTGCCATCCTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTC 1320
consensus_9968#1 TTNTGCCATCTTGACCTGATCGGAGATTGGAGATTCAGTTCTGAAGCAAAAATGTTTGTC 68
** ******* *************************************************
consensus_9968#0 TTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTC 1380
consensus_9968#1 TTTGCAAGAGCTCTGAATTTGGCAGAGAGATATGTTTCTCGGTTTCTGAAGAGATGTGTC 128
************************************************************
consensus_9968#0 TCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAG 1440
consensus_9968#1 TCGCAAAAAAAAGGCAGCTCTGAATTTGGGAGAGGTGTGTCTCTTCTTTGATTCGTCAAG 188
************************************************************
consensus_9968#0 CAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATT 1500
consensus_9968#1 CAAAGATCATTAAGGTGATAACTGATAAAGATTAAAATTTGTTGTATGCAATGTATAATT 248
************************************************************
consensus_9968#0 AGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGG 1560
consensus_9968#1 AGTTGGGGTTAGGAGTGTACATGGGTGATTTGATTTGATCTGTTTTGTTTGGTTTGGTGG 308
************************************************************
consensus_9968#0 TGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTC 1620
consensus_9968#1 TGGCGTTGATGACTTGATGCTGGCTGGGGGAGTATTGGGTTGTGTTGTGTTGGGTTGGTC 368
************************************************************
consensus_9968#0 TGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTTTATTTTTTTTGCA 1680
consensus_9968#1 TGAATGTATGTAGGGTGGGCTGTAGGGAAAAAGAATAAACTTTTTTT-ATTTTTTTTGCA 427
*********************************************** ************
consensus_9968#0 AAAAAAAAAAAA--AAGG-------------------- 1696
consensus_9968#1 TTCTATGGTAAATTAAGGCATTCTCTTTTTAAAAAGCT 465
* *** ****
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||