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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9978#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1024 fasta sequence
[CCCTCCTTCCTCCTCCGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGTCCGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATACATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCTTTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC-TATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAAC-TGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT-GAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATACTTGTTCGAGTGAATGCTGCTATATTACTGTGTTTCTAAACATCTTATGAAGGCCACCGGGATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTAATTTGAGGCA]
[+] EMBL AK109327 [CCCTCCTTCCTCCTCCGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGTCCGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATACATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCTTTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAAC TGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT GAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATACTTGTTCGAGTGAATGCTGCTATATTACTCTGTTTCTAAACATCTTATGAAGGCCACCGGGATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTAATTTGAGGCA]
[+] EMBL CB632714 [ CGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGCCGGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATACATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCTTTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGAAGACGAG ]
[-] EMBL CB632715 [ GCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATACATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCTTTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAAC TGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT GAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATACTTGTTCGAGTGAATGCTGCTATATTACTGTGTTTCTAAACATCTTATGAAGGCCACCGGGATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTA ]
[+] EMBL CA764105 [ TGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGGAGGCGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAAC TGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT GAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAATACTTGTTCGAGTGAATGCTGCTATATTACTGTGT ]
[+] EMBL AU077622 [ gncnagnGTTGGTTTAAAGAATGGTTTTCAGGTAGGTGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGATCAAGATGCATTCTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGAGAAGC TATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAAGACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAACTTGGAGTATCAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTTGGAAATGATATATGGGACCCAACCATGTTTtaa ]
[-] EMBL D43242 [ CTAGCTGCACTGTTNAGAAGCTTATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCCAGATATAATGGAGNAGATAAGACTNAAATTCAGGGTTATCACNGCAAGTTTAGGTACAAAAC TGGAGTATNAAGGTCGCCCTACATCATCCAAGCAGGATGTTGAGGATCTGTAACTAGTTTAGCTTTCATTGTCAAATTACCATGTT GAAATGATATNTGAGACCCAAACATGTTTATGTAG ]
consensusID : consensus_9978#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 759 fasta sequence
[CGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGCCGGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTACAGGTAGGTGAAGAACTATGTTTTTATCATGGATGTTTGGATGTTAGGACGTCTATGGTTTCAATTGATCAAGATGCATTTCTCATCTATGGTTAAGGAAAACATTAATCATTTCTCTGTACTGTTGAGAATCTATGCTTTGGTTAACCCATATACTAGCATTTTGAGGATGTTATGGAGAATATTTCCTTCAATGTTGGTTTTCACATATGCGTGTGTCTAAAGCTATTTTAACGGATCCTTCTATTGCATCTGGATGTCCGGCTTGTCGGCGAATTCTTTAGATGGTGGTACTAGAGAGGATATTTGATTCATA]
[+] EMBL BE041008 [CGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCCCCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCTCTTTCGCCGGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCTGCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCCAGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACCATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGGCTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTACAGGTAGGTGAAGAACTATGTTTTTATCATGGATGTTTGGATGTTAGGACGTCTATGGTTTCAATTGATCAAGATGCATTTCTCATCTATGGTTAAGGAAAACATTAATCATTTCTCTGTACTGTTGAGAATCTATGCTTTGGTTAACCCATATACTAGCATTTTGAGGATGTTATGGAGAATATTTCCTTCAATGTTGGTTTTCACATATGCGTGTGTCTAAAGCTATTTTAACGGATCCTTCTATTGCATCTGGATGTCCGGCTTGTCGGCGAATTCTTTAGATGGTGGTACTAGAGAGGATATTTGATTCATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9978#0 CCCTCCTTCCTCCTCCGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCC 60
consensus_9978#1 ---------------CGGTCGTAGCGGCGGCGCCCAGCGGCCGCGCCACCGCGTCGTCCC 45
*********************************************
consensus_9978#0 CCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCT 120
consensus_9978#1 CCCGCCAGCTGCGGCGCCTCGCCTGGTCCACCGGCGGAGGGGCCGTGCGGCGCCCCGCCT 105
************************************************************
consensus_9978#0 CTTTCGTCCGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCT 180
consensus_9978#1 CTTTCGCCGGCGGAGACCGGGGAAAGCGCAGTTCCGTTGCTATCAGCGGCCTTCGCCTCT 165
****** * ***************************************************
consensus_9978#0 GCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCC 240
consensus_9978#1 GCCCTGAGTAGGCGGCGGAAAGCGCGGTGGCTAAGGACTCCAACTGCAGCGGCGTGTTCC 225
************************************************************
consensus_9978#0 AGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGTATGCATAC 300
consensus_9978#1 AGAAGTATCGCGGAAACTGACGCCTTCTTCCGGGAGCAACTGAGCAAAGGGT-------- 277
****************************************************
consensus_9978#0 ATTTTCTTACTGAGCAACCTTTTGGAATCCCTCTCTAAGGAACTGTTTACTGCAACATCT 360
consensus_9978#1 ------------------------------------------------------------
consensus_9978#0 TTAGGTTCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACC 420
consensus_9978#1 ------TCTTATTAATACCATGGATCAGAAACCTAAGGATGATTTTGATTTCCTTGAACC 331
******************************************************
consensus_9978#0 ATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGG 480
consensus_9978#1 ATCAGTACTCTTAGATGAGACACACTATCAAACGGGTTTCAAGAATGGTTATAGTGAGGG 391
************************************************************
consensus_9978#0 CTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTTCAGGTAGG 540
consensus_9978#1 CTTGGTGTCTGGAAAAGAAGAGGGAAGGCAGGTTGGTTTAAAGAATGGTTTACAGGTAGG 451
*************************************************** ********
consensus_9978#0 TGAAGAACTAGGTTTTTATCAGGGATGTCTGGATGTTTGGACGTCGTTGGTTTCAATTGA 600
consensus_9978#1 TGAAGAACTATGTTTTTATCATGGATGTTTGGATGTTAGGACGTCTATGGTTTCAATTGA 511
********** ********** ****** ******** ******* *************
consensus_9978#0 TCAAGATGCATT-CTCAGCTCGGGTCAGGAAAAACATTGAGCAACTAGCTGCACTGTTGA 659
consensus_9978#1 TCAAGATGCATTTCTCATCTATGGTTAAGGAAAACATTAATCATTTCTCTGTACTGTTGA 571
************ **** ** *** * * ******** * ** * *** ********
consensus_9978#0 GAAGCTATCCGTTGTCGAACCCAGAAGACGAGCAAGTTCAAGATATAATGGAGAAGATAA 719
consensus_9978#1 GAATCTATGCTTTGGTTAACCCATAT-ACTAGCATTTTGAGGATGTTATGGAGAATATTT 630
*** **** * *** ****** * ** **** ** * *** * ******** **
consensus_9978#0 GACTGAAATTCAGGGTTATCACAGCAAGTTTAGGTACAAAACTGGAGTATCAAGGTCGCC 779
consensus_9978#1 CCTTCAATGTT--GGTTTTCACA-TATGCGTGTGTCTAAAGCTATTTTAACG-GATCCTT 686
* ** * **** ***** * * * ** *** ** ** * * **
consensus_9978#0 CTACATCATCCAAGCAGGATGTTGAGG--ATCTGTAACTAGTTTAGCTTTCATTGTCAAA 837
consensus_9978#1 CTATTGCATCT-----GGATGTCCGGCTTGTCGGCGAATTCTTTAGATGGTGGTACTAGA 741
*** **** ****** * ** * * * ***** * * * *
consensus_9978#0 TTACCATGTTGAAATGATATATGAGACCCAAACATGTTTATGTAGGTTTCGGTTAACGAA 897
consensus_9978#1 G-AGGATATTTGATTCATA----------------------------------------- 759
* ** ** * * ***
consensus_9978#0 TACTTGTTCGAGTGAATGCTGCTATATTACTGTGTTTCTAAACATCTTATGAAGGCCACC 957
consensus_9978#1 ------------------------------------------------------------
consensus_9978#0 GGGATCACAGTGGAGACCTGAAAGCCTGTATCTGAGTATCTATGTACACTCAAGTTAATT 1017
consensus_9978#1 ------------------------------------------------------------
consensus_9978#0 TGAGGCA 1024
consensus_9978#1 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||