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Oryza sativa
cluster # 9981 cluster # 9981       Sequences # 7       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9981#0 length = 2516 sequences # 2  
 consensus_9981#1 length = 663 sequences # 4  
consensus_9981#2 length = 597 sequences # 1  
consensusID : consensus_9981#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2516
fasta sequence 
                              [TAGGTTTTCGCGGCGGCGGCGGCGGCCGTCGTTCGCANCGCGGCGGCGCTGCAGCGAGAACGNCGTCTCGGNTCGCGTCTGGAATTGCTGCTCGGTGGCATCGCCTTCGGATGTGCTCGACACCACCAGCGGGAGCCGGGGAGGTAGTGCGCCACCCGGGAGCAGACAGCTTGGAAATGGATCGTCTCCACCGCCGGCGANATCGTCGGCTGAAAGGAGAAGCTCGAGGATCCGTTCCTGGTACTTGGAGGATTGAACAGAGTAATTTAGTGATCAATTTGTGATGATGATCGTTCAAGGTGCGTTCAGTTTGGAAACCTCTCTTAAGATCCATGCCATCAAGTTTGCATCCTTGGTGCTTNCATTGNACAACCAACTTTAGTTAATGTTTTCCGCCAAATTGTGGGTGTAAATTCCAATTTTCAAATGTAAGTTAAGTAGCTATATGCTTGATAGGGTAGGTATGTCAAATTTATAGTTTAAGTAATTCATTTTCTATTGATTGCTCTTTCACAGTAAAGAGTTGCGAGCCAGAGTTTCTGATGTCTTCTTGAACTTGTCTTTAAAAGCTATCGACATATCGGGCGTTTCGATGGTGGTCATTGATGGACTGAAATGTTTCATGGACCTTAATCTTCCATTACAGACGACATTCTTAGCGGAAGTTCCTCTTGCCAAATCCTTGACTGGGGTTCTCAAAATCTGTGGTCAGGTGCTGCCTGAATTTCTTTAAAATTTACAATCCTCGTAGCAGGATTGGCTTTTACTTGTTAACTGTCATATTATAACATCACTCATGCTCTTCTTGTCACCAAGCAGATTTGTCACTGCTGTAAGTTTTGACTGTTTTGTGTTCCTTTTCATCTAATTCTCATGTGTCTTCATTAATGATACACTTTTCGTTGGAGTAGTTCTTAACTTCTTGTTTTGAAAATGCAGTTAAGTACTTTGCCTGTAAGAAGTTATACTCAATGCATCCAATGTTGTCAGACGAAGAAGTTACAGTAACAAGGTGCAGACTGCTAAAGTCACCGACTTCTATGATTGTGATCCAGCAAATCCTGGACAGCCCTTTGCACCATTCCTCTTTTTCAAGCGAAGCAAAAAAAGGTACACAACACACAGTGAATCAGTGACAGATCTCTGTATCTTTAAAGTGCATGAACATGTCTAAGGAGTAACTTCTTTTTATGCACTCCTTTTTGGTACGATCCTCTTCATCTTGCTCTCTTCTCCCATTCCGTGCATTTCAAACACATCAATAGATTCTTGTGCTGCTGAGCTGATGGCAATAAGAAAGAAAAGCTTCTCTGCTTCAGCATCTTTCTTCATCAAGTGTTCGTCCTAGGCTCCTAGTAATCACTGTAAAGAGCCTTTTGGACTGGAGCTAGATGGCTAGATGCTGAACAATCAATCACAAAATGGAAGGTCATGGTGTGTTGGGACCATGATCAGCAAATGGCATGTTGATACATCACGAAAGCTAAGTTTTGCATGTACAGCTTGGTGTGTCATATCAATCTATGATCACCTCTGCTTGCTGCTTTAAGCCTCTCTTCTTTTGTAATAGGCAACCTGTGATTTTGTTCTCTCCTATGATTCCTCTGAAGTTAAGTCTCAGTGGCAAGCAATTCCAGCATTTTGCAGACAATGATCCAAACAAAAAATTAAAATTCCTACTTATCTTCATGAAGCTTCCATGCACAAGCTTGTTGTGTATTACTATCACCTCTGATTGCTGCTTTAAGTCTCTTCTTTTGCAGGCAACCTGTGATTTCGTTCAATCCTACGATTCCTCTGATGTTAAATCTCAGTGGCATGAAATTCGATTGCGTTTTGCAGACAATGATCCAAGCAAAGATATTCCTTCTCATCTCCATCTTCGGAGACGAATAAACATGGACACTTGATGCAGAAGCCTGTCTTGGAGAAACATCTCTGATGGATGGACGAGGCAATTCAGCAGAGCCCTTCTTTGTCATGACTACCATATCTGTCTCTCTGCACAACTCAGATCTTCTCCACAGGTAACTAAAATAGTTAAGAGCACATGATTAAGCATGCATTAAACTAGTCAAGTACCCTCCTTTTGGCAGCAAGCTCGATCGAGCTTATCGTAATCCCTGTGCAAAGGTAGTTCAGGCCAAAAACAGATACATTGATTAATTGGGTTAGCACAAGTATTAAATTTGCAAGTTGACACTTAAAGAGGGGCGATGATGCATCGCATCTCTTGCAAGCTTGCCTCCATGGCCATCCAAGCCTGTCAGCGTCACTGATTATACTAATTAAGCATGCAGTGTAATCATGCTTTCATGCTCCATTTGTTTTGTTGTTTGTGTTGATTGATTGGTGTGCGAGAGTCCTATTTTTTCATGAAAAACTTTGTGCCCGCTCCTTTTCCTTCGATTTGGAGATCGGCCAAGTTCGCCTTTTTATTATGAGGCGTGGAGAATGTCGTGTTAAAAAATACTGTATGCAAGGACATAGGGCAGAGGAATACCTGCTTATAAAAT]

[+] EMBL OS1321770            [TAGGTTTTCGCGGCGGCGGCGGCGGCCGTCGTTCGCANCGCGGCGGCGCTGCAGCGAGAACGNCGTCTCGGNTCGCGTCTGGAATTGCTGCTCGGTGGCATCGCCTTCGGATGTGCTCGACACCACCAGCGGGAGCCGGGGAGGTAGTGCGCCACCCGGGAGCAGACAGCTTGGAAATGGATCGTCTCCACCGCCGGCGANATCGTCGGCTGAAAGGAGAAGCTCGAGGATCCGTTCCTGGTACTTGGAGGATTGAACAGAGTAATTTAGTGATCAATTTGTGATGATGATCGTTCAAGGTGCGTTCAGTTTGGAAACCTCTCTTAAGATCCATGCCATCAAGTTTGCATCCTTGGTGCTTNCATTGNACAACCAACTTTAGTTAATGTTTTCCGCCAAATTGTGGGTGTAAATTCCAATTTTCAAATGTAAGTTAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK102804             [         GCGGCGGCGGCGGCGGCCGTCGTTCGCATCGCGGCGGCGCTGCAGCGAGAACGCCGTCTCGGCTCGCGTCTGGAATTGCTGCTCGGTGGCATCGCCTTCGGATGTGCTCGACACCACCAGCGGGAGCCGGGGAGGTAGTGCGCCACCCGGGAGCAGACAGCTTGGAAATGGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAGGATCCGTTCCTGGTACTTGGAGGATTGAACAGAGTAATTTAGTGATCAATTTGTGATGATGATCGTGC AGGTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATC AGTTTGCATCC TGGTGCTTCCATTGAAC ACCAAC TTAGTT ATGTTTT CGCC AATTGTGGATGT AATTCC ATTTTC AATGTCAGTGAGTTAGCTATATGCTTGATAGGGTAGGTATGTCAAATTTATAGTTTAAGTAATTCATTTTCTATTGATTGCTCTTTCACAGTAAAGAGTTGCGAGCCAGAGTTTCTGATGTCTTCTTGAACTTGTCTTTAAAAGCTATCGACATATCGGGCGTTTCGATGGTGGTCATTGATGGACTGAAATGTTTCATGGACCTTAATCTTCCATTACAGACGACATTCTTAGCGGAAGTTCCTCTTGCCAAATCCTTGACTGGGGTTCTCAAAATCTGTGGTCAGGTGCTGCCTGAATTTCTTTAAAATTTACAATCCTCGTAGCAGGATTGGCTTTTACTTGTTAACTGTCATATTATAACATCACTCATGCTCTTCTTGTCACCAAGCAGATTTGTCACTGCTGTAAGTTTTGACTGTTTTGTGTTCCTTTTCATCTAATTCTCATGTGTCTTCATTAATGATACACTTTTCGTTGGAGTAGTTCTTAACTTCTTGTTTTGAAAATGCAGTTAAGTACTTTGCCTGTAAGAAGTTATACTCAATGCATCCAATGTTGTCAGACGAAGAAGTTACAGTAACAAGGTGCAGACTGCTAAAGTCACCGACTTCTATGATTGTGATCCAGCAAATCCTGGACAGCCCTTTGCACCATTCCTCTTTTTCAAGCGAAGCAAAAAAAGGTACACAACACACAGTGAATCAGTGACAGATCTCTGTATCTTTAAAGTGCATGAACATGTCTAAGGAGTAACTTCTTTTTATGCACTCCTTTTTGGTACGATCCTCTTCATCTTGCTCTCTTCTCCCATTCCGTGCATTTCAAACACATCAATAGATTCTTGTGCTGCTGAGCTGATGGCAATAAGAAAGAAAAGCTTCTCTGCTTCAGCATCTTTCTTCATCAAGTGTTCGTCCTAGGCTCCTAGTAATCACTGTAAAGAGCCTTTTGGACTGGAGCTAGATGGCTAGATGCTGAACAATCAATCACAAAATGGAAGGTCATGGTGTGTTGGGACCATGATCAGCAAATGGCATGTTGATACATCACGAAAGCTAAGTTTTGCATGTACAGCTTGGTGTGTCATATCAATCTATGATCACCTCTGCTTGCTGCTTTAAGCCTCTCTTCTTTTGTAATAGGCAACCTGTGATTTTGTTCTCTCCTATGATTCCTCTGAAGTTAAGTCTCAGTGGCAAGCAATTCCAGCATTTTGCAGACAATGATCCAAACAAAAAATTAAAATTCCTACTTATCTTCATGAAGCTTCCATGCACAAGCTTGTTGTGTATTACTATCACCTCTGATTGCTGCTTTAAGTCTCTTCTTTTGCAGGCAACCTGTGATTTCGTTCAATCCTACGATTCCTCTGATGTTAAATCTCAGTGGCATGAAATTCGATTGCGTTTTGCAGACAATGATCCAAGCAAAGATATTCCTTCTCATCTCCATCTTCGGAGACGAATAAACATGGACACTTGATGCAGAAGCCTGTCTTGGAGAAACATCTCTGATGGATGGACGAGGCAATTCAGCAGAGCCCTTCTTTGTCATGACTACCATATCTGTCTCTCTGCACAACTCAGATCTTCTCCACAGGTAACTAAAATAGTTAAGAGCACATGATTAAGCATGCATTAAACTAGTCAAGTACCCTCCTTTTGGCAGCAAGCTCGATCGAGCTTATCGTAATCCCTGTGCAAAGGTAGTTCAGGCCAAAAACAGATACATTGATTAATTGGGTTAGCACAAGTATTAAATTTGCAAGTTGACACTTAAAGAGGGGCGATGATGCATCGCATCTCTTGCAAGCTTGCCTCCATGGCCATCCAAGCCTGTCAGCGTCACTGATTATACTAATTAAGCATGCAGTGTAATCATGCTTTCATGCTCCATTTGTTTTGTTGTTTGTGTTGATTGATTGGTGTGCGAGAGTCCTATTTTTTCATGAAAAACTTTGTGCCCGCTCCTTTTCCTTCGATTTGGAGATCGGCCAAGTTCGCCTTTTTATTATGAGGCGTGGAGAATGTCGTGTTAAAAAATACTGTATGCAAGGACATAGGGCAGAGGAATACCTGCTTATAAAAT]




>consensus_9981#0
TAGGTTTTCGCGGCGGCGGCGGCGGCCGTCGTTCGCANCGCGGCGGCGCTGCAGCGAGAA
CGNCGTCTCGGNTCGCGTCTGGAATTGCTGCTCGGTGGCATCGCCTTCGGATGTGCTCGA
CACCACCAGCGGGAGCCGGGGAGGTAGTGCGCCACCCGGGAGCAGACAGCTTGGAAATGG
ATCGTCTCCACCGCCGGCGANATCGTCGGCTGAAAGGAGAAGCTCGAGGATCCGTTCCTG
GTACTTGGAGGATTGAACAGAGTAATTTAGTGATCAATTTGTGATGATGATCGTTCAAGG
TGCGTTCAGTTTGGAAACCTCTCTTAAGATCCATGCCATCAAGTTTGCATCCTTGGTGCT
TNCATTGNACAACCAACTTTAGTTAATGTTTTCCGCCAAATTGTGGGTGTAAATTCCAAT
TTTCAAATGTAAGTTAAGTAGCTATATGCTTGATAGGGTAGGTATGTCAAATTTATAGTT
TAAGTAATTCATTTTCTATTGATTGCTCTTTCACAGTAAAGAGTTGCGAGCCAGAGTTTC
TGATGTCTTCTTGAACTTGTCTTTAAAAGCTATCGACATATCGGGCGTTTCGATGGTGGT
CATTGATGGACTGAAATGTTTCATGGACCTTAATCTTCCATTACAGACGACATTCTTAGC
GGAAGTTCCTCTTGCCAAATCCTTGACTGGGGTTCTCAAAATCTGTGGTCAGGTGCTGCC
TGAATTTCTTTAAAATTTACAATCCTCGTAGCAGGATTGGCTTTTACTTGTTAACTGTCA
TATTATAACATCACTCATGCTCTTCTTGTCACCAAGCAGATTTGTCACTGCTGTAAGTTT
TGACTGTTTTGTGTTCCTTTTCATCTAATTCTCATGTGTCTTCATTAATGATACACTTTT
CGTTGGAGTAGTTCTTAACTTCTTGTTTTGAAAATGCAGTTAAGTACTTTGCCTGTAAGA
AGTTATACTCAATGCATCCAATGTTGTCAGACGAAGAAGTTACAGTAACAAGGTGCAGAC
TGCTAAAGTCACCGACTTCTATGATTGTGATCCAGCAAATCCTGGACAGCCCTTTGCACC
ATTCCTCTTTTTCAAGCGAAGCAAAAAAAGGTACACAACACACAGTGAATCAGTGACAGA
TCTCTGTATCTTTAAAGTGCATGAACATGTCTAAGGAGTAACTTCTTTTTATGCACTCCT
TTTTGGTACGATCCTCTTCATCTTGCTCTCTTCTCCCATTCCGTGCATTTCAAACACATC
AATAGATTCTTGTGCTGCTGAGCTGATGGCAATAAGAAAGAAAAGCTTCTCTGCTTCAGC
ATCTTTCTTCATCAAGTGTTCGTCCTAGGCTCCTAGTAATCACTGTAAAGAGCCTTTTGG
ACTGGAGCTAGATGGCTAGATGCTGAACAATCAATCACAAAATGGAAGGTCATGGTGTGT
TGGGACCATGATCAGCAAATGGCATGTTGATACATCACGAAAGCTAAGTTTTGCATGTAC
AGCTTGGTGTGTCATATCAATCTATGATCACCTCTGCTTGCTGCTTTAAGCCTCTCTTCT
TTTGTAATAGGCAACCTGTGATTTTGTTCTCTCCTATGATTCCTCTGAAGTTAAGTCTCA
GTGGCAAGCAATTCCAGCATTTTGCAGACAATGATCCAAACAAAAAATTAAAATTCCTAC
TTATCTTCATGAAGCTTCCATGCACAAGCTTGTTGTGTATTACTATCACCTCTGATTGCT
GCTTTAAGTCTCTTCTTTTGCAGGCAACCTGTGATTTCGTTCAATCCTACGATTCCTCTG
ATGTTAAATCTCAGTGGCATGAAATTCGATTGCGTTTTGCAGACAATGATCCAAGCAAAG
ATATTCCTTCTCATCTCCATCTTCGGAGACGAATAAACATGGACACTTGATGCAGAAGCC
TGTCTTGGAGAAACATCTCTGATGGATGGACGAGGCAATTCAGCAGAGCCCTTCTTTGTC
ATGACTACCATATCTGTCTCTCTGCACAACTCAGATCTTCTCCACAGGTAACTAAAATAG
TTAAGAGCACATGATTAAGCATGCATTAAACTAGTCAAGTACCCTCCTTTTGGCAGCAAG
CTCGATCGAGCTTATCGTAATCCCTGTGCAAAGGTAGTTCAGGCCAAAAACAGATACATT
GATTAATTGGGTTAGCACAAGTATTAAATTTGCAAGTTGACACTTAAAGAGGGGCGATGA
TGCATCGCATCTCTTGCAAGCTTGCCTCCATGGCCATCCAAGCCTGTCAGCGTCACTGAT
TATACTAATTAAGCATGCAGTGTAATCATGCTTTCATGCTCCATTTGTTTTGTTGTTTGT
GTTGATTGATTGGTGTGCGAGAGTCCTATTTTTTCATGAAAAACTTTGTGCCCGCTCCTT
TTCCTTCGATTTGGAGATCGGCCAAGTTCGCCTTTTTATTATGAGGCGTGGAGAATGTCG
TGTTAAAAAATACTGTATGCAAGGACATAGGGCAGAGGAATACCTGCTTATAAAAT

consensusID : consensus_9981#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 663
fasta sequence 
                              [CGGTTTCGTGGGCTAGGTTTTCGCGGCGGCGGCGGCGGCCGTCGTTCGCATCGCGGCGGCGCTGCAGCGAGAACGCCGTCTCGGCTCGCGTCTGGAATTGCTGCTCGGTGGCATCGCCTTCGGATGTGCTCGACACCACCAGCGGGAGCCGGGGAGGTAGTGCGCCACCCGGGAGCAGACAGCTTGGAAATGGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAGGTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATCCTGGTGCTTCCATTGAACACCAACTTAGTTATGTTTTCGCCAATTGTGGATGTAATTCCATTTTCAATGTCAGTGAGTTAGCTATATGCTTGATAGGGTAGGTATGTCAAATTTATAGTTTAAGTAATTCATTTTCTATTGATTGCTCTTTCACAGTAAAGAGTTGCGAGCCAGAGTTTCTGATATCTTCTTGAACTTGTCTTTAAAAGCTATCGACATATCGGGCGTTTCGATGGTGGTGAGTAAATTTGATCATTGGACTCTTTGGTACTGAGGCAGCTGATTGTATCACTTACATTTAATATCTGAGAATGGATTTTAACGACCAATATATATAGTTTTCACTTCTANAGTTTGCAAGATATTAAAAA]

[+] EMBL AK062442             [CGGTTTCGTGGGCTAGGTTTTCGCGGCGGCGGCGGCGGCCGTCGTTCGCATCGCGGCGGCGCTGCAGCGAGAACGCCGTCTCGGCTCGCGTCTGGAATTGCTGCTCGGTGGCATCGCCTTCGGATGTGCTCGACACCACCAGCGGGAGCCGGGGAGGTAGTGCGCCACCCGGGAGCAGACAGCTTGGAAATGGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAGGTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATCCTGGTGCTTCCATTGAACACCAACTTAGTTATGTTTTCGCCAATTGTGGATGTAATTCCATTTTCAATGTCAGTGAGTTAGCTATATGCTTGATAGGGTAGGTATGTCAAATTTATAGTTTAAGTAATTCATTTTCTATTGATTGCTCTTTCACAGTAAAGAGTTGCGAGCCAGAGTTTCTGATATCTTCTTGAACTTGTCTTTAAAAGCTATCGACATATCGGGCGTTTCGATGGTGGTGAGTAAATTTGATCATTGGACTCTTTGGTACTGAGGCAGCTGATTGTATCACTTACATTTAATATCTGAGAATGGATTTT                                                   ]
[+] EMBL AU077525             [                GTTTTCGCGGCGGCGGCGGCGGCCGTCGTTCGCATCGCGGCGGCGCTGCAGCGAGAACNCCGTCTCGGCTCGCGTCTGGAATTNCTGCTCGGTGGCATCGCCTTCGGATGTGCTCGACACCACCAGCGGGAGCCGGGGAGGTAGTGCGCCACCCGGGANCAGACAGCTTGGAAATGGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAGGTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATCCTGGTGCTTCCATTGAACACCAACTTAGTTATGTTTTCGCCAATTGTGGATGTAATTCCATTTTCAATGTCAGTGAGTTAGCTATA                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB679948             [                               GCGGCGGCCGTCGTTCGCATCGCGGCGGCGCTGCAGCGAGAACGCCGTCTCGGCTCGCGTCTGGAATTGCTGCTCGGTGGCATCGCCTTCGGATGTGCTCGACACCACCAGCGGGAGCCGGGGAGGTAGTGCGCCACCCGGGAGCAGACAGCTTGGAAATGGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAGGTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATCCTGGTGCTTCCATTGAACACCAACTTAGTTATGTTTTCGCCAATTGTGGATGTAATTCCATTTTCAATGTCAGTGAGTTAGCTATATGCTTGATAGGGTAGGTATGTCAAATTTATAGTTTAAGTAATTCATTTTCTATTGATTGCTCTTTCACAGTAAAGAGTTGCGAGCCAGAGTTTCTGATATCTTCTTGAACTTGTCTTTAAAAGCTATCGACATATCGGGCGTTTCGATGGTGGTGAGTAAATTTGATCATTGGACTCTTTGGTACTGAGGCAGCTGATTGTATCACTTACATTTAATATCTGAGAATGGATTTTAACGAC                                             ]
[+] EMBL AU077526             [                                                                                                                                                                                                                                                                                                                                                                                                                 AATTTATAGTTTAAGTAATTCATTTTCTATTGANTNCTCTTNCACAGTAAAGAGTTGCGAGCCAGAGTTTCTGATATCTTCTTGNANTTGTCTTTAAAAGCTATCGACATATCGGGCGTTTCGATGGTGGTGAGTAANTTTGATCATTGGACTCTTTGGTACTGAGGCNGNTGATTGTATCACTTACATTTAATATCTGAGAATGGATTTTNACGNCCAATATATATAGTTTTCACTTCTANAGTTTGCAAGATATTAAAAA]




>consensus_9981#1
CGGTTTCGTGGGCTAGGTTTTCGCGGCGGCGGCGGCGGCCGTCGTTCGCATCGCGGCGGC
GCTGCAGCGAGAACGCCGTCTCGGCTCGCGTCTGGAATTGCTGCTCGGTGGCATCGCCTT
CGGATGTGCTCGACACCACCAGCGGGAGCCGGGGAGGTAGTGCGCCACCCGGGAGCAGAC
AGCTTGGAAATGGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGA
GGTGCGTTCAGTTTGGAAACCTCTCTGAAGATCCATGCCATCAGTTTGCATCCTGGTGCT
TCCATTGAACACCAACTTAGTTATGTTTTCGCCAATTGTGGATGTAATTCCATTTTCAAT
GTCAGTGAGTTAGCTATATGCTTGATAGGGTAGGTATGTCAAATTTATAGTTTAAGTAAT
TCATTTTCTATTGATTGCTCTTTCACAGTAAAGAGTTGCGAGCCAGAGTTTCTGATATCT
TCTTGAACTTGTCTTTAAAAGCTATCGACATATCGGGCGTTTCGATGGTGGTGAGTAAAT
TTGATCATTGGACTCTTTGGTACTGAGGCAGCTGATTGTATCACTTACATTTAATATCTG
AGAATGGATTTTAACGACCAATATATATAGTTTTCACTTCTANAGTTTGCAAGATATTAA
AAA

consensusID : consensus_9981#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence 
                              [GACAAGGGGCAGACTGCTAAAGTCACCGACTTCTATGATTGTGATCCAGCAAGTCCTGGACAGCCCTTTGCACCATTCCTCTTTTTCAAGCGAAGCAAAAAAAGACAATGATCCAAGCAAAGATATTCCTTCTCATCTCCATCTTNGGAGACGAATAAACATGGACACTTGATGCAGAAGCCTGTCTTGGAGAAACATCTCTGATGGATGGACGAGGCAATTCAGCAGAGCCCTTCTTTGTCATGACTACCATATCTGTCTCTCTGCACAACTCAGATCTTCTCCACAGGTAACTAAAATAGTTTAGAGCACATGATTAAGCATGCATTAAACTAGTCAAGTACCCTCCTTTTGGCAGCAAGCTCGATCGAGCTTATCGTAATCCCTGTGCAAAGGTAGTTCAGGCCAAAAACAGATACATTGATTAATTGGGTTAGCACAAGTATTAAATTTGCAAGTTGACACTTAAAGAGGGGCGATGATGCATCGCATCTCTTGCAAGCTTGCCTCCATGGCCATCCAAGCCTGTTAGCGTCACTGATTATACTAATTAAGCATGCAGTGTAATCATGCTTTCATGCTCCAAAAAAAAAAAAA]

[-] EMBL CA761911             [GACAAGGGGCAGACTGCTAAAGTCACCGACTTCTATGATTGTGATCCAGCAAGTCCTGGACAGCCCTTTGCACCATTCCTCTTTTTCAAGCGAAGCAAAAAAAGACAATGATCCAAGCAAAGATATTCCTTCTCATCTCCATCTTNGGAGACGAATAAACATGGACACTTGATGCAGAAGCCTGTCTTGGAGAAACATCTCTGATGGATGGACGAGGCAATTCAGCAGAGCCCTTCTTTGTCATGACTACCATATCTGTCTCTCTGCACAACTCAGATCTTCTCCACAGGTAACTAAAATAGTTTAGAGCACATGATTAAGCATGCATTAAACTAGTCAAGTACCCTCCTTTTGGCAGCAAGCTCGATCGAGCTTATCGTAATCCCTGTGCAAAGGTAGTTCAGGCCAAAAACAGATACATTGATTAATTGGGTTAGCACAAGTATTAAATTTGCAAGTTGACACTTAAAGAGGGGCGATGATGCATCGCATCTCTTGCAAGCTTGCCTCCATGGCCATCCAAGCCTGTTAGCGTCACTGATTATACTAATTAAGCATGCAGTGTAATCATGCTTTCATGCTCCAAAAAAAAAAAAA]




>consensus_9981#2
GACAAGGGGCAGACTGCTAAAGTCACCGACTTCTATGATTGTGATCCAGCAAGTCCTGGA
CAGCCCTTTGCACCATTCCTCTTTTTCAAGCGAAGCAAAAAAAGACAATGATCCAAGCAA
AGATATTCCTTCTCATCTCCATCTTNGGAGACGAATAAACATGGACACTTGATGCAGAAG
CCTGTCTTGGAGAAACATCTCTGATGGATGGACGAGGCAATTCAGCAGAGCCCTTCTTTG
TCATGACTACCATATCTGTCTCTCTGCACAACTCAGATCTTCTCCACAGGTAACTAAAAT
AGTTTAGAGCACATGATTAAGCATGCATTAAACTAGTCAAGTACCCTCCTTTTGGCAGCA
AGCTCGATCGAGCTTATCGTAATCCCTGTGCAAAGGTAGTTCAGGCCAAAAACAGATACA
TTGATTAATTGGGTTAGCACAAGTATTAAATTTGCAAGTTGACACTTAAAGAGGGGCGAT
GATGCATCGCATCTCTTGCAAGCTTGCCTCCATGGCCATCCAAGCCTGTTAGCGTCACTG
ATTATACTAATTAAGCATGCAGTGTAATCATGCTTTCATGCTCCAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9981#0      TAGGTTTTCGCGGCGGCGGCGGCGGCCGTCGTTCGCANCGCGGCGGCGCTGCAGCGAGAA 60
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      CGNCGTCTCGGNTCGCGTCTGGAATTGCTGCTCGGTGGCATCGCCTTCGGATGTGCTCGA 120
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      CACCACCAGCGGGAGCCGGGGAGGTAGTGCGCCACCCGGGAGCAGACAGCTTGGAAATGG 180
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      ATCGTCTCCACCGCCGGCGANATCGTCGGCTGAAAGGAGAAGCTCGAGGATCCGTTCCTG 240
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      GTACTTGGAGGATTGAACAGAGTAATTTAGTGATCAATTTGTGATGATGATCGTTCAAGG 300
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TGCGTTCAGTTTGGAAACCTCTCTTAAGATCCATGCCATCAAGTTTGCATCCTTGGTGCT 360
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TNCATTGNACAACCAACTTTAGTTAATGTTTTCCGCCAAATTGTGGGTGTAAATTCCAAT 420
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TTTCAAATGTAAGTTAAGTAGCTATATGCTTGATAGGGTAGGTATGTCAAATTTATAGTT 480
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TAAGTAATTCATTTTCTATTGATTGCTCTTTCACAGTAAAGAGTTGCGAGCCAGAGTTTC 540
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TGATGTCTTCTTGAACTTGTCTTTAAAAGCTATCGACATATCGGGCGTTTCGATGGTGGT 600
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      CATTGATGGACTGAAATGTTTCATGGACCTTAATCTTCCATTACAGACGACATTCTTAGC 660
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      GGAAGTTCCTCTTGCCAAATCCTTGACTGGGGTTCTCAAAATCTGTGGTCAGGTGCTGCC 720
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TGAATTTCTTTAAAATTTACAATCCTCGTAGCAGGATTGGCTTTTACTTGTTAACTGTCA 780
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TATTATAACATCACTCATGCTCTTCTTGTCACCAAGCAGATTTGTCACTGCTGTAAGTTT 840
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TGACTGTTTTGTGTTCCTTTTCATCTAATTCTCATGTGTCTTCATTAATGATACACTTTT 900
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      CGTTGGAGTAGTTCTTAACTTCTTGTTTTGAAAATGCAGTTAAGTACTTTGCCTGTAAGA 960
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      AGTTATACTCAATGCATCCAATGTTGTCAGACGAAGAAGTTACAGTAACAAGGTGCAGAC 1020
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TGCTAAAGTCACCGACTTCTATGATTGTGATCCAGCAAATCCTGGACAGCCCTTTGCACC 1080
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      ATTCCTCTTTTTCAAGCGAAGCAAAAAAAGGTACACAACACACAGTGAATCAGTGACAGA 1140
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TCTCTGTATCTTTAAAGTGCATGAACATGTCTAAGGAGTAACTTCTTTTTATGCACTCCT 1200
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TTTTGGTACGATCCTCTTCATCTTGCTCTCTTCTCCCATTCCGTGCATTTCAAACACATC 1260
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      AATAGATTCTTGTGCTGCTGAGCTGATGGCAATAAGAAAGAAAAGCTTCTCTGCTTCAGC 1320
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      ATCTTTCTTCATCAAGTGTTCGTCCTAGGCTCCTAGTAATCACTGTAAAGAGCCTTTTGG 1380
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      ACTGGAGCTAGATGGCTAGATGCTGAACAATCAATCACAAAATGGAAGGTCATGGTGTGT 1440
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TGGGACCATGATCAGCAAATGGCATGTTGATACATCACGAAAGCTAAGTTTTGCATGTAC 1500
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      AGCTTGGTGTGTCATATCAATCTATGATCACCTCTGCTTGCTGCTTTAAGCCTCTCTTCT 1560
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TTTGTAATAGGCAACCTGTGATTTTGTTCTCTCCTATGATTCCTCTGAAGTTAAGTCTCA 1620
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      GTGGCAAGCAATTCCAGCATTTTGCAGACAATGATCCAAACAAAAAATTAAAATTCCTAC 1680
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      --------------------------------------------------------CGGT 4
                                                                                  

consensus_9981#0      TTATCTTCATGAAGCTTCCATGCACAAGCTTGTTGTGTATTACTATCACCTCTGATTGCT 1740
consensus_9981#2      --------------------------GACAAGGGGCAGACTGCTAAAGTCACCGACT--- 31
consensus_9981#1      TTCGTGGGCTAGGTTTTCGCGGCGGCGGCGGCGGCCGTCGTTCGCATCGCGGCGGCGCTG 64
                                                  *           * *      *   *      

consensus_9981#0      GCTTTAAGTCTCTTCTTTTGCAGGCAACCTGTGATTTCGTTCAA-TCCTACGAT-TCCTC 1798
consensus_9981#2      --TCTATGATTGTGATCCAGCAAGT--CCTGGA----CAGCCCT-TTGCACCAT-TCCTC 81
consensus_9981#1      CAGCGAGAACGCCGTCTCGGCTCGCG-TCTGGAATTGCTGCTCGGTGGCATCGCCTTCGG 123
                           *             **  *    ***      *       *   *     * *  

consensus_9981#0      TGATGTTAAATCTCAGTGGCATGAAATTCGATTGCGTTTTGCAGACAATGATCCAA--GC 1856
consensus_9981#2      T--TTTTCAAGC---GAAGCAAAAAA----------------AGACAATGATCCAA--GC 118
consensus_9981#1      ATGTGCTCGACACCACCAGCGGGAGCCGGGGAGGTAGTGCGCCACCCGGGAGCAGACAGC 183
                         *  *  *        **   *                     *   ** *  *  **

consensus_9981#0      AAAGATAT---TCCTTCTCATCTCCATCTTCGGAGACGAATAAACATGGACACTTGATGC 1913
consensus_9981#2      AAAGATAT---TCCTTCTCATCTCCATCTTNGGAGACGAATAAACATGGACACTTGATGC 175
consensus_9981#1      TTGGAAATGGATCGTCTCCACCGCCGGCGACATCGTCGGCTGAAAGGAGAAGCTCGAGGT 243
                         ** **   ** *   ** * **  *      * **  * **    **  ** ** * 

consensus_9981#0      AGAAGCCTGTCTTGGAGAAACATCTCTGATGGATGGACGAGGCAATT--CAGCAGAGCCC 1971
consensus_9981#2      AGAAGCCTGTCTTGGAGAAACATCTCTGATGGATGGACGAGGCAATT--CAGCAGAGCCC 233
consensus_9981#1      G--CGTTCAGTTTGG--AAACCTCTCTGAAGATCCATGCCATCAGTTTGCATCCTGGTGC 299
                          *      ****  **** ******* *           ** **  ** *   *  *

consensus_9981#0      TTCTTTGTCATGACTACCATATCTGTCTCTCTGCACAACTCAGATCTT-CTCCACAGGTA 2030
consensus_9981#2      TTCTTTGTCATGACTACCATATCTGTCTCTCTGCACAACTCAGATCTT-CTCCACAGGTA 292
consensus_9981#1      TTCCAT-TGAACACCAACTTAGTTATGTTTTCGCCAATTGTGGATGTAATTCCATTTTCA 358
                      ***  * * *  ** * * **  * * * *  **  *     *** *   ****     *

consensus_9981#0      ACTAAAATAGTTAAGAGCACATGATTAAGCATGCATTAAACTAGTCAAGTACCCTCCTTT 2090
consensus_9981#2      ACTAAAATAGTTTAGAGCACATGATTAAGCATGCATTAAACTAGTCAAGTACCCTCCTTT 352
consensus_9981#1      ATGTCAGTGAGTTAGC-TATATGCTTGA---TAGGGTAGGTATGTCAAAT-TTATAGTTT 413
                      *    * *   * **   * *** ** *   *    **     ***** *    *  ***

consensus_9981#0      TGGCAGCAAGCTCGATCGAGCTTATCGTAATCCCTGTGCAAAGGTAGTTCAGGCCAAAAA 2150
consensus_9981#2      TGGCAGCAAGCTCGATCGAGCTTATCGTAATCCCTGTGCAAAGGTAGTTCAGGCCAAAAA 412
consensus_9981#1      AAGTAATTCATT---TTCTATTGATTGCTCTTTCACAGTAAAGA-GTTGCGAGCCAGAGT 469
                        * *      *   *     * ** *   *  *   * ****    * *  **** *  

consensus_9981#0      --CAGATACATTGATTAATTGGGTTAGCACAAGTATTAAATTTGCAAGTTGACACTTAAA 2208
consensus_9981#2      --CAGATACATTGATTAATTGGGTTAGCACAAGTATTAAATTTGCAAGTTGACACTTAAA 470
consensus_9981#1      TTCTGATATCTTCTTGAACTTGTCTTTAAAAGCTATCGACATATCGGGCGTTTCGATGGT 529
                        * ****  **  * ** * *  *   * *  ***  *  *  *  *        *   

consensus_9981#0      GAGGGGCGATGATG--CATCGCATCTCTTG----CAAGCTTGCCTCCATGGCCATCCAAG 2262
consensus_9981#2      GAGGGGCGATGATG--CATCGCATCTCTTG----CAAGCTTGCCTCCATGGCCATCCAAG 524
consensus_9981#1      GGTGAGTAAATTTGATCATTGGACTCTTTGGTACTGAGGCAGCTGATTGTATCACTTACA 589
                      *  * *  *   **  *** * *    ***      **   **         **   *  

consensus_9981#0      CCTGTCAGC--GTCACTGATTATACTAATTAAGCATGCAGTGTAATCATGCTTTCATGCT 2320
consensus_9981#2      CCTGTTAGC--GTCACTGATTATACTAATTAAGCATGCAGTGTAATCATGCTTTCATGCT 582
consensus_9981#1      TTTAATATCTGAGAATGGATTTTAACGACCAA-TATATATAGTTTTCACTTCTANAGTTT 648
                        *   * *     *  **** **   *  **  **  *  **  ***    *  *   *

consensus_9981#0      CCATTTGTTTTGTTGTTTGTGTTGATTGATTGGTGTGCGAGAGTCCTATTTTTTCATGAA 2380
consensus_9981#2      CCAAAAAAAAAAAAA--------------------------------------------- 597
consensus_9981#1      GCAAGATATTAAAAA--------------------------------------------- 663
                       **                                                         

consensus_9981#0      AAACTTTGTGCCCGCTCCTTTTCCTTCGATTTGGAGATCGGCCAAGTTCGCCTTTTTATT 2440
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      ATGAGGCGTGGAGAATGTCGTGTTAAAAAATACTGTATGCAAGGACATAGGGCAGAGGAA 2500
consensus_9981#2      ------------------------------------------------------------
consensus_9981#1      ------------------------------------------------------------
                                                                                  

consensus_9981#0      TACCTGCTTATAAAAT 2516
consensus_9981#2      ----------------
consensus_9981#1      ----------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)