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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2055 fasta sequence
[CACCATTCTCTTCTTCGTCTACTTCCAGCTAGCCTGAGCTCTAGCTTAGCTCTAGCTTAGCCTGAAGAAGCTAAGAGAGGAAGCAACAATGGAGATTGAGAGAGAGAGCAGTGAGAGAGGGAGCATCAGCTGGAGAGCTAGTGCGGCACATGATCAAGATGCCAAGAAGCTCGACGCAGATGATCAGCTGCTAATGAAGGAGCCTGCATGGAAAAGGTTCCTTGCCCATGTTGGTCCTGGATTCATGGTGTCTTTAGCCTACTTGGATCCTGGCAATTTGGAAACCGATCTGCAAGCCGGAGCCAACCACAGATATGAGCTGCTCTGGGTGATTCTGATTGGACTCATCTTCGCACTTATCATACAGTCGCTAGCAGCTAATCTTGGAGTGGTTACAGGGAGGCATCTGGCTGAGATCTGCAAGAGTGAGTACCCCAAGTTCGTCAAGATTTTCCTATGGCTGCTGGCAGAGTTGGCCGTCATCGCTGCAGATATCCCAGAAGTTATAGGGACGGCCTTTGCTTTCAACATATTGTTCCATATTCCGGTGTGGGTCGGCGTCCTCATCACCGGCACCAGCACTCTACTGCTTCTTGGCCTCCAAAAATACGGGGTGAGGAAGCTGGAGTTTCTGATATCGATGCTGGTGTTCGTGATGGCGGCGTGCTTCTTCGGGGAGCTGAGCATCGTGAAGCCGCCGGCGAAGGAGGTGATGAAGGGGCTCTTCATCCCCAGGCTCAACGGCGACGGAGCCACCGCCGACGCCATTGCCCTCCTCGGAGCTCTTGTCATGCCCCACAATCTGTTCTTGCATTCTGCCTTGGTGCTAT-CGAGGAAGACACCGGCATCAGTCAGAGGAATCAAGGACGGGTGCAGGTTCTTCCTGTACGAGAGCGGGTTCGCGCTGT-TCGTGGCGCTGCTGATAAACATCGCCGTCGTCTCCGTCTCCGGCACCGCCTGCTCCTCCGCCAACCTCTCCCAAGAGGACGCCGACAAGTGCGCCAACCTCAGCCTCGACACCTCCTCCTTCCTTCTCAAGAACGTGCTGGGCAAGTCGAGTGCGATCGTGTATGGCGTGGCACTGTTGGCATCTGGGCAGAGCTCCACTATTACCGGCACATACGCTGGACAGTACATCATGCAGGGTTTCTTGGACATCAGGATGAGGAAGTGGCTTCGGAACCTGATGACAAGAACCATCGCCATCGCGCCGAGCCTCATCGTCTCCATCATCGGCGGCTCCAGGGGCGCCGGCCGCCTCATCATCATCGCTTCGATGATACTGTCCTTCGAGCTGCCGTTTGCTCTCATCCCTCTTCTCAAGTTCAGCAGCAGTAAGAGCAAGATGGGGCCCCACAAGAACTCTATCTATATAATAGTGTTCTCGTGGTTCCTGGGTCTGCTCATCATCGGCATCAACATGTACTTCCTGAGCACGAGCTTCGTCGGCTGGCTCATCCACAACGACCTCCCCAAGTACGCCAACGTGCTCGTCGGCGCCG-CCGTCTTCCCGTTCATGCTCGTCTACATCGTCGCCGTCGTCTACCTCACCATCAGGAAGGACTCCGTCGTCACCTTCGTCGCCGACTCCTCCCTCGCCGCCGTCGTCGACGCCGAGAAGGCCGACGCCGGCGACCTCGCCGTCGACGACGACGAGCCCTTGCCGTACCGCGACGACCTGGCCGACATCCCGCTCCCAAGGTAGAGAAGAAGAAGATCGACATGCATACGTATGGTATAGCGTATGTATACGTACGTATATACGCGTACATTGTGAATATACGTACTTACGTACGTATATGTGCATCCTCTATGGATGCCACGTGCGTGCGTCGGAGCCGTTCGTTTATATTTGTGCGGTCCAGATCGCTCGCAGATCGATCGATCGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCAGGGCAGAGCCAACGTCCTTCAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK070788 [CACCATTCTCTTCTTCGTCTACTTCCAGCTAGCCTGAGCTCTAGCTTAGCTCTAGCTTAGCCTGAAGAAGCTAAGAGAGGAAGCAACAATGGAGATTGAGAGAGAGAGCAGTGAGAGAGGGAGCATCAGCTGGAGAGCTAGTGCGGCACATGATCAAGATGCCAAGAAGCTCGACGCAGATGATCAGCTGCTAATGAAGGAGCCTGCATGGAAAAGGTTCCTTGCCCATGTTGGTCCTGGATTCATGGTGTCTTTAGCCTACTTGGATCCTGGCAATTTGGAAACCGATCTGCAAGCCGGAGCCAACCACAGATATGAGCTGCTCTGGGTGATTCTGATTGGACTCATCTTCGCACTTATCATACAGTCGCTAGCAGCTAATCTTGGAGTGGTTACAGGGAGGCATCTGGCTGAGATCTGCAAGAGTGAGTACCCCAAGTTCGTCAAGATTTTCCTATGGCTGCTGGCAGAGTTGGCCGTCATCGCTGCAGATATCCCAGAAGTTATAGGGACGGCCTTTGCTTTCAACATATTGTTCCATATTCCGGTGTGGGTCGGCGTCCTCATCACCGGCACCAGCACTCTACTGCTTCTTGGCCTCCAAAAATACGGGGTGAGGAAGCTGGAGTTTCTGATATCGATGCTGGTGTTCGTGATGGCGGCGTGCTTCTTCGGGGAGCTGAGCATCGTGAAGCCGCCGGCGAAGGAGGTGATGAAGGGGCTCTTCATCCCCAGGCTCAACGGCGACGGCGCCACCGCCGACGCCATTGCCCTCCTCGGAGCTCTTGTCATGCCCCACAATCTGTTCTTGCATTCTGCCTTGGTGCTAT CGAGGAAGACACCGGCATCAGTCAGAGGAATCAAGGACGGGTGCAGGTTCTTCCTGTACGAGAGCGGGTTCGCGCTGT TCGTGGCGCTGCTGATAAACATCGCCGTCGTCTCCGTCTCCGGCACCGCCTGCTCCTCCGCCAACCTCTCCCAAGAGGACGCCGACAAGTGCGCCAACCTCAGCCTCGACACCTCCTCCTTCCTTCTCAAGAACGTGCTGGGCAAGTCGAGTGCGATCGTGTACGGCGTGGCACTGTTGGCATCTGGGCAGAGCTCCACTATTACCGGCACATACGCTGGACAGTACATCATGCAGGGTTTCTTGGACATCAGGATGAGGAAGTGGCTTCGGAACCTGATGACAAGAACCATCGCCATCGCGCCGAGCCTCATCGTCTCCATCATCGGCGGCTCCAGGGGCGCCGGCCGCCTCATCATCATCGCTTCGATGATACTGTCCTTCGAGCTGCCGTTTGCTCTCATCCCTCTTCTCAAGTTCAGCAGCAGTAAGAGCAAGATGGGGCCCCACAAGAACTCTATCTATATAATAGTGTTCTCGTGGTTCCTGGGTCTGCTCATCATCGGCATCAACATGTACTTCCTGAGCACGAGCTTCGTCGGCTGGCTCATCCACAACGACCTCCCCAAGTACGCCAACGTGCTCGTCGGCGCCG CCGTCTTCCCGTTCATGCTCGTCTACATCGTCGCCGTCGTCTACCTCACCATCAGGAAGGACTCCGTCGTCACCTTCGTCGCCGACTCCTCCCTCGCCGCCGTCGTCGACGCCGAGAAGGCCGACGCCGGCGACCTCGCCGTCGACGACGACGAGCCCTTGCCGTACCGCGACGACCTGGCCGACATCCCGCTCCCAAGGTAGAGAAGAAGAAGATCGACATGCATACGTATGGTATAGCGTATGTATACGTACGTATATACGCGTACATTGTGAATATACGTACTTACGTACGTATATGTGCATCCTCTATGGATGCCACGTGCGTGCGTCGGAGCCGTTCGTTTATATTTGTGCGGTCCAGATCGCTCGCAGATCGATCGATCGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCAGGGCAGAGCC ]
[+] EMBL AA750229 [ GTTATAGGGACGGCCTTTGCTTTCAACATATTGTTCCATATTCCGGTGTGGGTCGGCGTCCTCATCACCGGCACCAGCACTCTACTGCTTCTTGGCCTCCAAAAATACGGGGTGAGGAAGCTGGAGTTTCTGATATCGATGCTGGTGTTCGTGATGGCGGCGTGCTTCTTCGGGGAG ]
[+] EMBL CA757042 [ AGGAGGTGATGAAGGGGCTCTTCATGCCCAGGCTCAACGGCGACGGAGCCACCGCCGACGCCATTGCCCTCCTCGGAGCTCTTGTCATGCCCCACAATCTGTTCTTGCATTCTGCCTTGGCGCTATCCGAGGAAGACACCGGCATCAGTCAGAGGAATCAAGGACGGGTGCAGGTTCTTACTGTACGAGAGCGGGTTCGCGCTGG TCGGGGCGCTGCTGATAAACATCGCCGTCGTCTCCGTCTCCGGCACCGCCTGCTCCTCCGCCAACCTCTCCCAAGAGGACGCCGACAAGTGCGCCAACCTCAGCCTCGACACCTCCTCCTTCCTTCTCAAGAACGTGCTGGGCAAGTCGAGTGCGATCGTGTATGGCGTGGCACTGTTGGCATCTGGGCAGAGCTCCACTATTACCGGCACATACGCTGGACAGTACATCATGCAGGGTTTCTTGGACATCAGGATGAGGAAGTGGCTTCGGAACCTGATGACAAGAACCATCGCCATCGCGCCGAGCCTCATCGTCTCCATCATCGGCGGCTCCAGGGGCGCCGGCCGCCTCATCATCATCGCTTCGATGATACTGTCCTTCGAGCTGCCGTTTGCTCTCATCCCTCTTCTCAAGTTCAGCAGCAGTAAGAGCAAGATGGGGCCCCACAAGAACTCTATCTATATAATAGTGTTCTCGTGGTTCCTGGGGCTGCTCATCATCGGCATCAACATGTACTTCCTGAGCACGAGCTTCGTCGGCTGGCTCATCCACAACGACCNTCCCAAGTACGCCAACGTGCTCGTCGGCGCCGNNCGTCTT CCG TCATGCTCGTCT CATCGGCGCCGTCGTCTA CTCACCATCAGGAA GACTCCGT ]
[+] EMBL BE607374 [ AGGAGGNGATNAANGGGCTCTTCATCCCCAGGCTCAACNGNGACGGNGCCACCGNCGACNCCATTGCCCTCCTNGGAGCTCTTGTCATGCCCCACAANCTGTTCTTGCATTCTGCCTTGGTGCTAT CGAGGAAGACACCGGCATCAGNCAGAGGAATCAAGGACGGGNGCNGGTTCTTCCTGTACGAGAGCGGGTTCGNGCTGTATCGTGGCGCTGCTGATAAACATCGNCGTCGTCTTCGTCTCCGGCACCGCCTGCTCCTNCGCCAACCTCTCCCAAGAGGACGCCGACAAGTGCGCCAACCTCAGCCTCGACACCTACTCCTT CTTCTNAAGAACGTGCTGGGCAAGTCGAGTGCGATCGTGTATGGCGTGGCACTGTTGGCATCTGGGCAGAGCTCCACTATTACCGGCACATACGCTGGACAGTACATCATG ]
[+] EMBL AU070750 [ TTCGTCGCCGACTCCTCCCTCGCCGCCGTCGTCGACGCCGAGAAGGCCGACGCCGGCGACCTCGCCGTCGACGACGACGAGCCCTTGCCGTACCGCGACGACCTGGCCGACATCCCGCTCCCAAGGTAGAGAAGAAGAAGATCGACATGCATACGTATGGTATAGCGTATGTATACGTACGTATATACGCGTACATTGTGAATATACGTACTTACGTACGTATATGTGCATCCTCTATGGATGCCACGTGCGTGCGTCGGAGCCGTTCGTTTATATTTGTGCGGTCCAGATCGCTCGCAGATCGATCGATCGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCA ]
[+] EMBL AU091988 [ GAGAAGGCCGACGCCGGCGACCTCGCCGTCGACGACGACGAGCCCTTGCCGTACCGCGACGACCTGGCCGACATCCCGCTCCCAAGGTAGAGAAGAAGAAGATCGACATGCATACGTATGGTATAGCGTATGTATACGTACGTATATACGCGTACATTGTGAATATACGTACTTACGTACGTATATGTGCATCCTCTATGGATGCCACGTGCGTGCGTCGGAGCCGTTCGTTTATATTTGTGCGGTCCAGATCGCTCGCAGATCGATCGATCGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCAGGGCAGAGCCAACGTCCTTCAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 193 fasta sequence
[CGAGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCAGGGCAGAGCCAACGTCCTTCAATTTTCTGTGATGAATCAACTACTATTAATTAATTAATTAATTAAGCAATTAGATTAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761301 [CGAGACAAGGGTGTGCAATTAATATATAAGCATTTGAGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCAGGGCAGAGCCAACGTCCTTCAATTTTCTGTGATGAATCAACTACTATTAATTAATTAATTAATTAAGCAATTAGATTAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9984#0 CACCATTCTCTTCTTCGTCTACTTCCAGCTAGCCTGAGCTCTAGCTTAGCTCTAGCTTAG 60
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CCTGAAGAAGCTAAGAGAGGAAGCAACAATGGAGATTGAGAGAGAGAGCAGTGAGAGAGG 120
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 GAGCATCAGCTGGAGAGCTAGTGCGGCACATGATCAAGATGCCAAGAAGCTCGACGCAGA 180
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 TGATCAGCTGCTAATGAAGGAGCCTGCATGGAAAAGGTTCCTTGCCCATGTTGGTCCTGG 240
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 ATTCATGGTGTCTTTAGCCTACTTGGATCCTGGCAATTTGGAAACCGATCTGCAAGCCGG 300
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 AGCCAACCACAGATATGAGCTGCTCTGGGTGATTCTGATTGGACTCATCTTCGCACTTAT 360
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CATACAGTCGCTAGCAGCTAATCTTGGAGTGGTTACAGGGAGGCATCTGGCTGAGATCTG 420
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CAAGAGTGAGTACCCCAAGTTCGTCAAGATTTTCCTATGGCTGCTGGCAGAGTTGGCCGT 480
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CATCGCTGCAGATATCCCAGAAGTTATAGGGACGGCCTTTGCTTTCAACATATTGTTCCA 540
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 TATTCCGGTGTGGGTCGGCGTCCTCATCACCGGCACCAGCACTCTACTGCTTCTTGGCCT 600
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CCAAAAATACGGGGTGAGGAAGCTGGAGTTTCTGATATCGATGCTGGTGTTCGTGATGGC 660
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 GGCGTGCTTCTTCGGGGAGCTGAGCATCGTGAAGCCGCCGGCGAAGGAGGTGATGAAGGG 720
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 GCTCTTCATCCCCAGGCTCAACGGCGACGGAGCCACCGCCGACGCCATTGCCCTCCTCGG 780
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 AGCTCTTGTCATGCCCCACAATCTGTTCTTGCATTCTGCCTTGGTGCTATCGAGGAAGAC 840
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 ACCGGCATCAGTCAGAGGAATCAAGGACGGGTGCAGGTTCTTCCTGTACGAGAGCGGGTT 900
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CGCGCTGTTCGTGGCGCTGCTGATAAACATCGCCGTCGTCTCCGTCTCCGGCACCGCCTG 960
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CTCCTCCGCCAACCTCTCCCAAGAGGACGCCGACAAGTGCGCCAACCTCAGCCTCGACAC 1020
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CTCCTCCTTCCTTCTCAAGAACGTGCTGGGCAAGTCGAGTGCGATCGTGTATGGCGTGGC 1080
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 ACTGTTGGCATCTGGGCAGAGCTCCACTATTACCGGCACATACGCTGGACAGTACATCAT 1140
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 GCAGGGTTTCTTGGACATCAGGATGAGGAAGTGGCTTCGGAACCTGATGACAAGAACCAT 1200
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CGCCATCGCGCCGAGCCTCATCGTCTCCATCATCGGCGGCTCCAGGGGCGCCGGCCGCCT 1260
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CATCATCATCGCTTCGATGATACTGTCCTTCGAGCTGCCGTTTGCTCTCATCCCTCTTCT 1320
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CAAGTTCAGCAGCAGTAAGAGCAAGATGGGGCCCCACAAGAACTCTATCTATATAATAGT 1380
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 GTTCTCGTGGTTCCTGGGTCTGCTCATCATCGGCATCAACATGTACTTCCTGAGCACGAG 1440
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CTTCGTCGGCTGGCTCATCCACAACGACCTCCCCAAGTACGCCAACGTGCTCGTCGGCGC 1500
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 CGCCGTCTTCCCGTTCATGCTCGTCTACATCGTCGCCGTCGTCTACCTCACCATCAGGAA 1560
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 GGACTCCGTCGTCACCTTCGTCGCCGACTCCTCCCTCGCCGCCGTCGTCGACGCCGAGAA 1620
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 GGCCGACGCCGGCGACCTCGCCGTCGACGACGACGAGCCCTTGCCGTACCGCGACGACCT 1680
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 GGCCGACATCCCGCTCCCAAGGTAGAGAAGAAGAAGATCGACATGCATACGTATGGTATA 1740
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 GCGTATGTATACGTACGTATATACGCGTACATTGTGAATATACGTACTTACGTACGTATA 1800
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 TGTGCATCCTCTATGGATGCCACGTGCGTGCGTCGGAGCCGTTCGTTTATATTTGTGCGG 1860
consensus_9984#1 ------------------------------------------------------------
consensus_9984#0 TCCAGATCGCTCGCAGATCGATCGATCGACAAGGGTGTGCAATTAATATATAAGCATTTG 1920
consensus_9984#1 ----------------------CGA--GACAAGGGTGTGCAATTAATATATAAGCATTTG 36
*** *********************************
consensus_9984#0 AGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCA 1980
consensus_9984#1 AGGGGAGGTGGCTCATGTATCCTTGTAATTTATATGTACGATATGATTTATCATAATTCA 96
************************************************************
consensus_9984#0 GGGCAGAGCCAACGTCCTTCAATTTA----------------------AAAAAAAAAAAA 2018
consensus_9984#1 GGGCAGAGCCAACGTCCTTCAATTTTCTGTGATGAATCAACTACTATTAATTAATTAATT 156
************************* ** ** **
consensus_9984#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2055
consensus_9984#1 AATTAAGCAATTAGATTAAAAAAAAAAAAAAAAAAAA 193
** ** ** * * ********************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||