These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 532 fasta sequence [AGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGCGCGCGTCGGCGGCATCGTCGTCGTCGACGAG-CCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGG-GGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGG-GGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTA-GTAATCGCTTGAATAATAATCTCCTCT-CCCTTTGCCTAGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTATCCATGAACTGTCAAAGAACATGAACAGAAGTCCTCTCTTTCCTGTCATCCCTTGTAACAGTGTCATTTCGATTTCAACTGAAAAATGCCTGTGGTTAAATCTTCACTTGTATCAAAAA] [+] EMBL OS0290A [AGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGCGCGCGTCGGCGGCATCGTCGTCGTCGACGAG CCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCNGCCGG GGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGGCGGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTA GTAATCGCTTGAATAATAATCTCCTCT CCCTTTGCCTAGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTATCCATGAACTGT AAAG ACATG ACAGAAGTCCTCTCTTT CTGTNAT CCTTGTAACAANGTNATTTCGA TTNAACTGAAA ] [+] EMBL C28094 [ CAGCAGCAAGCAGGTTAGCTGCNTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGCGCGCNTCGGCGGCATCGTCGTCGTCGA GAG CCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGG GGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGG GGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTA GTAATCGCTTGANTAATAATCTCCTCTNCCTTTTGCCTAGCGGTCGGCATCCATGTNTAAACCACTATCTTTTTGCTTAGGTTTATGGATCCNTTTTATCCATGNACTGTCAAAGACCATG ACAGAAGTCC ] [+] EMBL AU092833 [ AGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGCGCGCGTCGGCGGCATCGTCGTCGTCGACGAG CCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGGCGGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGG GGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTA GTAATCGCTTGAATAATAATCTCCTCT CCCTTTGCCTAGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTATCCATGAACTGTCAAAGAACATGAACAGAAGTCCTCTCTTTCCTGTCATCCCTTGTAACAGTGTCATTTCGATTTCAACTGAAAAATGCCTGTGGTTAAATCTTCACTTGTATCAAAAA] [+] EMBL C74058 [ GCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGCGCGCGTCGGCGGCATCGTCGTCGTCGA GAGACCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGG GGCCTCCTCGTCGGCGCCGTCGNCTACTTCATGTTCAAGG GGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTAGGTAATCGCTTGAAT ] [+] EMBL AK107786 [ AGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAGGCGCGCGTCGGCGGCATCGTCGTCGTCGACGAG CCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGGCGGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGG GGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTA GTAATCGCTTGAATAATAATCTCCTCT CCCTTTGCCTAGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTATCCATGAACTGTCAAAGAACATGAACAGAAGTCCTCTCTTTCCTGTCATCCCTTGTAACAGTGTCATTTCGATTTCAACTGAAAAAT ] [+] EMBL AU029389 [ AAGNTGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGCGCGCNTCGGCGGCATCGTCGTCGTCGACGAGCCCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGGCGGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGG GGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTA GTAATCGCTTGAATAATAATCTCCTCT CCCTTTGCCTAGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTATCCATGAACTGTCAAAGAACATGAACAGAAGTCCTCTCTTTCCTGTCATCCCTTGTAACAGTGTCATTTCGATTTCAACTGAAAAATGCCTGTGGTTAAAaaaaaaa ] consensusID : consensus_9985#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [ACCAACCAGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGCCAGGGTCGCCGCGATCATGTGGCGGAGAAGATGAGGGCTTGGGCATCCATGCCGAGACCCTTGAAGCGCGCGTCGGCGGCATCGTCGTTGTCGACGAGCGCGTGCGGCGTACAGCCGGCAGTCGCGCGAGTACTGCTGTCGGGCGTCGCTATTATGTTCAGGAGCAGGCA] [+] EMBL AA750497 [ACCAACCAGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGCCAGGGTCGCCGCGATCATGTGGCGGAGAAGATGAGGGCTTGGGCATCCATGCCGAGACCCTTGAAGCGCGCGTCGGCGGCATCGTCGTTGTCGACGAGCGCGTGCGGCGTACAGCCGGCAGTCGCGCGAGTACTGCTGTCGGGCGTCGCTATTATGTTCAGGAGCAGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9985#0 -------AGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGG 53 consensus_9985#1 ACCAACCAGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAG-CCAGGG 59 ********************************************** ****** consensus_9985#0 TCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCG 113 consensus_9985#1 TCGCCG-CGATCATGTGGC-GGAGAAGATGAGGGCTTGGGCATCCATG-CCGAGACCC-- 114 ****** ************ **************************** ***** ** consensus_9985#0 CTGAAGCGCGCGTCGGCGGCATCGTCGTCGTCGACGAGCCCGCTGCGGCGCTACAGCCCG 173 consensus_9985#1 TTGAAGCGCGCGTCGGCGGCATCGTCGTTGTCGACGAGCGCG-TGCGGCG-TACAGCCGG 172 *************************** ********** ** ******* ******* * consensus_9985#0 GCCACGCTCGCCGCCGGGGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGGGGA 233 consensus_9985#1 -------CAGTCGCGCGAGTACTGCTGTCGGG--CGTCGCTA---TTATGTTCAGGAGCA 220 * *** * * ***** ****** * ******* * * * consensus_9985#0 AGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATC 293 consensus_9985#1 GGCA-------------------------------------------------------- 224 *** consensus_9985#0 GCTTATATCACCTAGCTTATCTAGTAATCGCTTGAATAATAATCTCCTCTCCCTTTGCCT 353 consensus_9985#1 ------------------------------------------------------------ consensus_9985#0 AGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTA 413 consensus_9985#1 ------------------------------------------------------------ consensus_9985#0 TCCATGAACTGTCAAAGAACATGAACAGAAGTCCTCTCTTTCCTGTCATCCCTTGTAACA 473 consensus_9985#1 ------------------------------------------------------------ consensus_9985#0 GTGTCATTTCGATTTCAACTGAAAAATGCCTGTGGTTAAATCTTCACTTGTATCAAAAA 532 consensus_9985#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||