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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 801 fasta sequence
[GAGGACGAGACAAGGGGGTTGATGGNTGANNAAAAGGANAGTGGAGAGAGAAAGAAAGAGGACCACAGNTCCTNGAAGAAAAGCNAGATAAAANGGAGAAGGTTTAGGATTCTTCGNTGAAACCACCTGTTCATATAGCTGGAAGGCCTAATGTTCCTCCGTACCCCCTTCCAGCTCTTCCCATTGACGATGATGAAATTTNTTCCAAAGCANTTGGAGGNCCAACAGGAGAAATCCTTGAAACTAATGCCCAAGTTTNGAGNCAAATTTCAACCAACCTCAGCACTATGCAGATNCAGGATAACATNTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATAAATGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAG-TGATAGTGAATGAACATATATCCTCAGTAGTCTCAAGAGCTCT-TTAGAATAGACAGCTAAAATAAAAATGCCAGCCTTGTTCTG-TTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGA-CCTTCCAACC-GTTCTCC-AAATCAG-CCGGTTGGAACATGTACCATACTG-CCATGGGACATGGTTT-CCTTCTACAGCAGTGTCA-CCTTCAAAC-TCTGG-CATGNTTTTGTAATCTATA-GCTG-TTTAGCCTAATATG-AT-GGAAT-ATTGG--AATGGGAAGCCAAGATTTA]
[+] EMBL CB097100 [GAGGACGAGACAAGGGGGTTGATGGNTGANNAAAAGGANAGTGGAGAGAGAAAGAAAGAGGACCACAGNTCCTNGAAGAAAAGCNAGATAAAANGGAGAAGGTTTAGGATTCTTCGNTGAAACCACCTGTTCATATAGCTGGAAGGCCTAATGTTCCTCCGTACCCCCTTCCAGCTCTTCCCATTGACGATGATGAAATTTNTTCCAAAGCANTTGGAGGNCCAACAGGAGAAATCCTTGAAACTAATGCCCAAGTTTNGAGNCAAATTTCAACCAACCTCAGCACTATGCAGATNCAGGATAACATNTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATAAATGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAGNGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGNGAACTAGCTGATAGTGAATGAACATATATCCTCAGTAGTCTCAAGAGCTCTCTTAGAATAGACAGCTAAAATAAAAATGCCAGCCTTGTTCTG TTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGNTCCTTTCAGCATGTTNCGTCTAGTACTCTAGATTGGTGACCCTTCCAACCGGTTCTCCAAAATCAGNCCGGTTGGAACATGTACCATACTGCCCATGGGACATGGTTTNCTTTCTACAGCAGTGNCACCCTTCAAACTTCTGGCCATGNTTTTGNNATCTATAGGCTGNTTAAGCCTAATATGNATGGGAATAATTGGGNANNGNGAAGCCAAGATTTA]
[+] EMBL CA766953 [ TTTCAGATTCTTCGTTGAAACCACCTGTTCATATAGCTGGAAGGCCTAATGTTCCTCCGTACCCCCTTCCAGCTCTTCCCATTGACGATGATGAAATTTCTTCCAAAGCAATTGGAGGTCCAACAGGAGAAATCCTTGAAACTAATGCCCAAGTTTTGAGTCAAATTTCAACCAACCTCAGCACTATGCAGATACAGGATAACATCTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATAAATGATGCTCCAGATATCATGAAGCAGATGCCGCCGCTACCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCGGGCCAACTGTACCTATGCAGTAGTGAACTAG TGATAGTGAATGAACATATACCCTCAGTAGTCTCAAGAGCTCT TTAGAATAGACAGCTAAAATAAAAATGCCAGCCTTGTTCTG TTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGA CCTTCCAACC GTTCTCC AAATCAG CCGGTTGGAACATGTACCATACTG CCATGGGACATGGTTT CCTTCTACAGCAGTGTCA CCTTCAAAC TCTGG CATGN TTTGTAATCTATA GCTG GTTAGCCTAATATG AT GGAAT ATTGG AATGGGAAGCCAAGATTTA]
[+] EMBL AA750575 [ CAGGGTCTTGAAAGAGAGAAATGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAG TGATAGTGAATGACCATATATCCTCAGTAGTCTCAAGAGCTCT TTAGAATAGACAGCTAAAATAAAAATGCCAG CTTGTTCTGTTTCGTTCA ]
[-] EMBL BI306544 [ CTCCAGATATCATGAAGCAGATGCCACCGCTACCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAG TGATAGTGAATGAACATATATCCTCAGTAGTCTCAAGAGCTCT TTAGAATAGACAGCTAAAATAAAAATGCCAGCCTTGTTCTG TTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGA CCTTCCAACC GTTCTCC AAATCAG CCGGTTGGAACATGTACCATACTG CCATGGGACATGGTTT CCTTCTACAGCAGTGTCA CCTTCAAAC TCTGG CATG TTTTGTAATCTATA GCTG TTTAGCCTAATATG AT GGAAT ATTGG AATGGGAAGCCAAGA ]
[-] EMBL CB967088 [ TCATGAAGCAGATGCCACCGCTACCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAG TGATAGTGAATGAACATATATCCTCAGTAGTCTCAAGAGCTCT TTAGAATAGACAGCTAAAATAAAAATGCCAGCCTTGTTCTG TTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGA CCTTCCAACC GTTCTCC AAATCAG CCGGTTGGAACATGTACCATACTG CCATGGGACATGGTTT CCTTCTACAGCAGTGTCA CCTTCAAAC TCTGG CATG TTTTGTAATCTATA GCTG TTTAGCCTAATATG AT GGAAT ATTGG AATGGGAAGCCAAGA ]
consensusID : consensus_9991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[TTGAAAAAGATAAATGATGCTCCAGATATCATGAAGCAGATGCCCCCGCTNCCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAGTGATAGTGAATGAACATATATCCTCAGTAGTCTCAAGAGCTCTTTAGAATAGNCAGCTAAAATAAAAATGCCAGCCTTGTTCTGTTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGACCTTCCAACCGTTCTCCAAATCAGCCGGTTGGAACATGTACCATACTGCCATGGGACATGGTTTCCTTNTACAGCAGTGTCACCTTCAAACTCTGGCATGTTTTGTAATCTATAGCTGTTTAGCCTAAAAAAAAAAAAA]
[+] EMBL AU173177 [TTGAAAAAGATAAATGATGCTCCAGATATCATGAAGCAGATGCCCCCGCTNCCAGTGAAGATAAACGAGGAGCTAGTCAACTCAATGCTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAGTGATAGTGAATGAACATATATCCTCAGTAGTCTCAAGAGCTCTTTAGAATAGNCAGCTAAAATAAAAATGCCAGCCTTGTTCTGTTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATCTGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGACCTTCCAACCGTTCTCCAAATCAGCCGGTTGGAACATGTACCATACTGCCATGGGACATGGTTTCCTTNTACAGCAGTGTCACCTTCAAACTCTGGCATGTTTTGTAATCTATAGCTGTTTAGCCTAAAAAAAAAAAAA]
consensusID : consensus_9991#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence
[AAAATCCTTGAAACTAATGCCCAAGTTTTGAGTCAAATTTCAACCAACCTCAGCACTATGCAGATACAGGATAACATCTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATATTTGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAGGTGAAGATAAACGAGGAGCTAGTCAACTCAATGGCTCCCCAGGCCAACTGTACCTATGCAGGAGTGAACTAGTGCATAGTGGAACGAACATATATCCTCAGTCAGTCTCTAGAGCTTCTTTCAGGCAATTGAACAGGCTGCCATCAAAGATTGCCCCAGCCCCTTGGTTCCTGGTTTCGGTTTCCAC]
[+] EMBL AA754122 [AAAATCCTTGAAACTAATGCCCAAGTTTTGAGTCAAATTTCAACCAACCTCAGCACTATGCAGATACAGGATAACATCTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATATTTGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAGGTGAAGATAAACGAGGAGCTAGTCAACTCAATGGCTCCCCAGGCCAACTGTACCTATGCAGGAGTGAACTAGTGCATAGTGGAACGAACATATATCCTCAGTCAGTCTCTAGAGCTTCTTTCAGGCAATTGAACAGGCTGCCATCAAAGATTGCCCCAGCCCCTTGGTTCCTGGTTTCGGTTTCCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9991#0 GAGGACGAGACAAGGGGGTTGATGGNTGANNAAAAGGANAGTGGAGAGAGAAAGAAAGAG 60
consensus_9991#1 ------------------------------------------------------------
consensus_9991#2 ------------------------------------------------------------
consensus_9991#0 GACCACAGNTCCTNGAAGAAAAGCNAGATAAAANGGAGAAGGTTTAGGATTCTTCGNTGA 120
consensus_9991#1 ------------------------------------------------------------
consensus_9991#2 ------------------------------------------------------------
consensus_9991#0 AACCACCTGTTCATATAGCTGGAAGGCCTAATGTTCCTCCGTACCCCCTTCCAGCTCTTC 180
consensus_9991#1 ------------------------------------------------------------
consensus_9991#2 ------------------------------------------------------------
consensus_9991#0 CCATTGACGATGATGAAATTTNTTCCAAAGCANTTGGAGGNCCAACAGGAGAAATCCTTG 240
consensus_9991#1 ------------------------------------------------------------
consensus_9991#2 --------------------------------------------------AAAATCCTTG 10
consensus_9991#0 AAACTAATGCCCAAGTTTNGAGNCAAATTTCAACCAACCTCAGCACTATGCAGATNCAGG 300
consensus_9991#1 ------------------------------------------------------------
consensus_9991#2 AAACTAATGCCCAAGTTTTGAGTCAAATTTCAACCAACCTCAGCACTATGCAGATACAGG 70
consensus_9991#0 ATAACATNTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATAA 360
consensus_9991#1 -----------------------------------------------TTGAAAAAGATAA 13
consensus_9991#2 ATAACATCTCTCTACTGTGCCAAACTAGAGACAATATACTCAGGGTCTTGAAAGAGATAT 130
****** *****
consensus_9991#0 ATGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAG-TGAAGATAAACGAGGAG 419
consensus_9991#1 ATGATGCTCCAGATATCATGAAGCAGATGCCCCCGCTNCCAG-TGAAGATAAACGAGGAG 72
consensus_9991#2 TTGATGCTCCAGATATCATGAAGCAGATGCCACCGCTACCAGGTGAAGATAAACGAGGAG 190
****************************** ***** **** *****************
consensus_9991#0 CTAGTCAACTCAATG-CTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAGTG-ATA 477
consensus_9991#1 CTAGTCAACTCAATG-CTCCCCAGGCCAACTGTACCTATGCAGTAGTGAACTAGTG-ATA 130
consensus_9991#2 CTAGTCAACTCAATGGCTCCCCAGGCCAACTGTACCTATGCAGGAGTGAACTAGTGCATA 250
*************** *************************** ************ ***
consensus_9991#0 GTG-AATGAACATATATCCTCAGT-AGTCTCAAGAGCTCTTTAGAATAGACAGCTAAAAT 535
consensus_9991#1 GTG-AATGAACATATATCCTCAGT-AGTCTCAAGAGCTCTTTAGAATAGNCAGCTAAAAT 188
consensus_9991#2 GTGGAACGAACATATATCCTCAGTCAGTCTCTAGAGCTTCTTT---CAGGCAATTGAAC- 306
*** ** ***************** ****** ****** ** ** ** * **
consensus_9991#0 AAAAATGCCAGCCTTGTTCTGTTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATC 595
consensus_9991#1 AAAAATGCCAGCCTTGTTCTGTTCGTTCATTGTGTAGCTCCTCTGGTCCTTGATCTAATC 248
consensus_9991#2 -AGGCTGCCA------------TCAAAGATTGCCCCAGCCCCTTGGTTCCTGGTTTCGGT 353
* ***** ** **** ** **** * ** * *
consensus_9991#0 TGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGACCTTCCAACCGTTCTCCA 655
consensus_9991#1 TGTTCCTTTCAGCATGTTCCGTCTAGTACTCTAGATTGTTGACCTTCCAACCGTTCTCCA 308
consensus_9991#2 TTCCAC------------------------------------------------------ 359
* *
consensus_9991#0 AATCAGCCGGTTGGAACATGTACCATACTGCCATGGGACATGGTTTCCTTCTACAGCAGT 715
consensus_9991#1 AATCAGCCGGTTGGAACATGTACCATACTGCCATGGGACATGGTTTCCTTNTACAGCAGT 368
consensus_9991#2 ------------------------------------------------------------
consensus_9991#0 GTCACCTTCAAACTCTGGCATGNTTTTGTAATCTATAGCTGTTTAGCCTAATATGATGGA 775
consensus_9991#1 GTCACCTTCAAACTCTGGCATGTTTT-GTAATCTATAGCTGTTTAGCCTAAAAAAAAAAA 427
consensus_9991#2 ------------------------------------------------------------
consensus_9991#0 ATATTGGAATGGGAAGCCAAGATTTA 801
consensus_9991#1 AA------------------------ 429
consensus_9991#2 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||