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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1358 fasta sequence
[ACCAGCCGCCGCCGCCGCCGCCGCCGACTGCTCGGCGATCATGGTCGGCGACCGAAAGCGCCCGGCTCCCTTCGCCGGATTCTCCCCGTTCGCTCGCTCCCTCCTCTTCTCCGCCTCCTCCTCTAAACCACTACCTCCCCCCGAGGATCCACCCGCCGCCGCCGCCGACGAAATCCCTTCAGGAATCGCCGGCTCCAGTCGCGATATGCCGCCGCCCAAGCGCGCCAAGCGGGCCGAGCCTTCCAGCGACGAGGAGCGCTACAGCAGTGACGACGAGAGCTACAGCAGCGACTCCGACGACAGCGACGACGCGTCGGAGGAGCTCGATACGGTGCAAGCGGACTTCGCCTTCTACGACCCCAAGCCCGGCGACTTCCATGGCGTCAAGCTGCTGCTCAAGACCTACCTCGACTCCAAGCCGTGGGATCTCACTGGCTTCGTCGACCTCATCCTTGAGCAGACCACGGTGGGTACGGTTGTCAAGATTGCTGACGATGAAGAGGATGGTGAAGGAAATGGTGCTGATGGAAGCAGCACTGGTGGCAATGACGATCTGTTTGGTCTCATTAGCGTGCTTAATCTTGGAAGATACAGTGAGCACCGCTGTATGAAGGATCTTAAGGATTACCTGCTTGCTGTTTGTGGTGACAAGGATACCAAGAAGAAGCTCAAGCAAATGCTGGGGGACAAAGCACCTGATGTGGGTCTGCTTGTGTGCCGCCGTTTTGTGAATTTCCCATATGAACTTGTGCCCAAGATGTATGAATCGTTATTTGACGAAGTTTCATGGGCCACAGAAGACGAGCCAACACAAGAACTCCGGGACTCCTTCCGGTTCAAGCAGTACCTAATGGTTGTCAGAGTACTTGAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACAGTACAGAAGAGGATGAGCCTATTATCTATCCTAAGTTAGAAGACGAAATTTTTCGCGAGCTTTCTTCATGGTCGTTCACTTTCCCAATACGTTCTGAACAATCGGCTCAGCAAGAGATGAAGAATTACAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATCTACTATCTGAATAGTTCTCTCCACGCATTGTAGGTCGTGTGGAATTTTGCTGCTGTCCACATGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGGAAATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTT]
[+] EMBL CF277100 [ACCAGCCGCCGCCGCCGCCGCCGCCGACTGCTCGGCGATCATGGTCGGCGACCGAAAGCGCCCGGCTCCCTTCGCCGGATTCTCCCCGTTCGCTCGCTCCCTCCTCTTCTCCGCCTCCTCCTCTAAACCACTGCCTCCCCCCGAGGATCCACCCGCCGCCGCCGCCGACGAAATCCCTTCAGGAATCGCCGGCTCCAGTCGCGATATGCCGCCGCCCAAGCGCGCCAAGCGGGCCGAGCCTTCCAGCGACGAGGAGCGCTACAGCAGTGACGACGAGAGCTACAGCAGCGACTCCGACGACAGCGACGACGCGTCGGAGGAGCTCGATACGGTGCAAGCGGACTTCGCCTTCTACGACCCCAAGCCCGGCGACTTCCATGGCGTCAAGCTGCTGCTCAAGACCTACCTCG ]
[+] EMBL AK064339 [ CCAGCCGCCGCCGCCGCCGCCGCCGACTGCTCGGCGATCATGGTCGGCGACCGAAAGCGCCCGGCTCCCTTCGCCGGATTCTCCCCGTTCGCTCGCTCCCTCCTCTTCTCCGCCTCCTCCTCTAAACCACTACCTCTCCCCGGGGATCCACCCGCCGCCGCCGCCGACGAAATCCCTTCAGGAATCGCCGGCTCCAGTCGCGATATGCCGCCGCCCAAGCGCGCCAAGCGGGCCGAGCCTTCCAGCGACGAGGAGCGCTACAGCAGTGACGACGAGAGCTACAGCAGCGACTCCGACGACAGCGACGACGCGTCGGAGGAGCTCGATACGGTGCAAGCGGACTTCGCCTTCTACGACCCCAAGCCCGGCGACTTCCATGGCGTCAAGCTGCTGCTCAAGACCTACCTCGACTCCAAGCCGTGGGATCTCACTGGCTTCGTCGACCTCATCCTTGAGCAGACCACGGTGGGTACGGTTGTCAAGATTGCTGACGATGAAGAGGATGGTGAAGGAAATGGTGCTGATGGAAGCAGCACTGGTGGCAATGACGATCTGTTTGGTCTCATTAGCGTGCTTAATCTTGGAAGATACAGTGAGCACCGCTGTATGAAGGATCTTAAGGATTACCTGCTTGCTGTTTGTGGTGACAAGGATACCAAGAAGAAGCTCAAGCAAATGCTGGGGGACAAAGCACCTGATGTGGGTCTGCTTGTGTGCCGCCGTTTTGTGAATTTCCCATATGAACTTGTGCCCAAGATGTATGAATCGTTATTTGACGAAGTTTCATGGGCCACAGAAGACGAGCCAACACAAGAACTCCGGGACTCCTTCCGGTTCAAGCAGTACCTAATGGTTGTCAGAGTACTTGAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACAGTACAGAAGAGGATGAGCCTATTATCTATCCTAAGTTAGAAGACGAAATTTTTCGCGAGCTTTCTTCATGGTCGTTCACTTTCCCAATACGTTCTGAACAATCGGCTCAGCAAGAGATGAAGAATTACAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATCTACTATCTGAATAGTTCTCTCCACGCATTGTAGGTCGTGTGGAATTTTGCTGCTGTCCACATGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGGAAATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTT]
[+] EMBL CF315070 [ AGCCGCCGCCGCCGCCGCCGCCGACTGCTCGGCGATCATGGTCGGCGACCGAAAGCGCCCGGCTCCCTTCGCCGGATTCTCCCCGTTCGCTCGCTCCCTCCTCTTCTCCGCCTCCTCCTCTAAACCACTACCTCCCCCCGAGGATCCACCCGCCGCCGCCGCCGACAAAATCCCTTCAGGAATCGCCGGCTCCAGTCGCGATATGCCGCCGCCCAAGCGCGCCAAGCGGGCCGAGCCTTCCAGCGACGAGGAGCGCTACAGCAGTGACGACGAGAGCTACAGCAGCGACTCCGACGACAGCGACGACGCGTCGGAGGAGCTCGATACGGTGCAAGCGGACTTCGCCTTCTACGACCCCAAGCCCGGCGACTTCCATGGCGTCAAGCTGCTGCTCAAGACCTACCTCGACTCCAAGCCGTGGGATCTCACTGGCTTCGTCGACCTCATCCTTGAGCAGAC ]
[+] EMBL AK103879 [ CCGCCGCCGCCGCCGACTGCTCGGCGATCATGGTCGGCGACCGAAAGCGCCCGGCTCCCTTCGCCGGATTCTCCCCGTTCGCTCGCTCCCTCCTCTTCTCCGCCTCCTCCTCTAAACCACTACCTCCCCCCGAGGATCCACCCGCCGCTGCCGCCGACGAAATCCCTTCAGGAATCGCCGGCTCCAGTCGCGATATGCCGCCGCCCAAGCGCGCCAAGCGGGCCGAGCCTTCCAGCGACGAGGAGCGCTACAGCAGTGACGACGAGAGCTACAGCAGCGACTCCGACGACAGCGACGACGCGTCGGAGGAGCTCGATACGGTGCAAGCGGACTTCGCCTTCTACGACCCCAAGCCCGGCGACTTCCATGGCGTCAAGCTGCTGCTCAAGACCTACCTCGACTCCAAGCCGTGGGATCTCACTGGCTTCGTCGACCTCATCCTTGAGCAGACCACGGTGGGTACGGTTGTCAAGATTGCTGACGATGAAGAGGATGGTGAAGGAAATGGTGCTGATGGAAGCAGCACTGGTGGCAATGACGATCTGTTTGGTCTCATTAGCGTGCTTAATCTTGGAAGATACAGTGAGCACCGCTGTATGAAGGATCTTAAGGATTACCTGCTTGCTGTTTGTGGTGACAAGGATACCAAGAAGAAGCTCAAGCAAATGCTGGGGGACAAAGCACCTGATGTGGGTCTGCTTGTGTGCCGCCGTTTTGTGAATTTCCCATATGAACTTGTGCCCAAGATGTATGAATCGTTATTTGACGAAGTTTCATGGGCCACAGAAGACGAGCCAACACAAGAACTCCGGGACTCCTTCCGGTTCAAGCAGTACCTAATGGTTGTCAGAGTACTTGAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACAGTACAGAAGAGGATGAGCCTATTATCTATCCTAAGTTAGAAGACGAAATTTTTCGCGAGCTTTCTTCATGGTCGTTCACTTTCCCAATACGTTCTGAACAATCGGCTCAGCAAGAGATGAAGAATTACAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATCTACTATCTGAATAGTTCTCTCCACGCATTGTAGGTCGTGTGGAATTTTGCTGCTGTCCACATGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGGAAATCAATTATGAACTTCCCTTGTACTGATATCAAGAGATTTTGAAGGACTTT ]
[-] EMBL CF277101 [ AGTACTTGAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACAGTACAGAAGAGGATGAGCCTACTATCTATCCTAAGTTAGAAGACGAAATTTTTCGCGAGCTTTCTTCATGGTCGTTCACTTTCCCAATACGTTTTGAACAATCGGCTCAGC AGAGATGAAGAATTACAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATCTACTATTTGAATAGTTCTCTCCACGCATTGTAGGTCGTGTGGAATTTTGCTGCTGTCCACATGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGGAAATCAATTATGAACTTCCCTTATACTGATATCAAGAG ]
consensusID : consensus_9995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 664 fasta sequence
[CCTGTTGTAACTGGCTTACGCTGTATGAATAACACCGTCTTTGCCATCTGGTGTAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACCGTGCAGAAGAGGATGAGCCTATTATCTATCCTAAGGTAGAAGACGAAATTTTTCGCGAGGTATCAAGCAGGACATGGTACTGACAATTTGAGATTAATTTTTCTTTGTGCAGTTCTGTTTGATGTGGTAACAAAACTTTTTTCCTCAGCTTTTTTCATGGTCGTTCACTTTCCCAATACGTTTTGAACCATCGGCTCAGCCAGAGATGAAGAATTTCAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATTTACTATTTGAATAGTTCTCTCCCCGCCTTGTAGGTCGTGTGGAATTTTGCTGCTGTCCCCCTGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGAAAATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTTTGGTTGCTCGAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760197 [CCTGTTGTAACTGGCTTACGCTGTATGAATAACACCGTCTTTGCCATCTGGTGTAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACCGTGCAGAAGAGGATGAGCCTATTATCTATCCTAAGGTAGAAGACGAAATTTTTCGCGAGGTATCAAGCAGGACATGGTACTGACAATTTGAGATTAATTTTTCTTTGTGCAGTTCTGTTTGATGTGGTAACAAAACTTTTTTCCTCAGCTTTTTTCATGGTCGTTCACTTTCCCAATACGTTTTGAACCATCGGCTCAGCCAGAGATGAAGAATTTCAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATTTACTATTTGAATAGTTCTCTCCCCGCCTTGTAGGTCGTGTGGAATTTTGCTGCTGTCCCCCTGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGAAAATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTTTGGTTGCTCGAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760196 [CCTGTTGTAACTGGCTTACGCTGTATGAATAACACCGTCTTTGCCATCTGGTGTAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACCGTGCAGAAGAGGATGAGCCTATTATCTATCCTAAGGTAGAAGACGAAATTTTTCGCGAGGTATCAAGCAGGACATGGTACTGACAATTTGAGATTAATTTTTCTTTGTGCAGTTCTGTTTGATGTGGTAACAAAACTTTTTTCCTCAGCTTTTTTCATGGTCGTTCACTTTCCCAATACGTTTTGAACCATCGGCTCAGCCAGAGATGAAGAATTTCAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATTTACTATTTGAATAGTTCTCTCCCCGCCTTGTAGGTCGTGTGGAATTTTGCTGCTGTCCCCCTGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGAAAATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTTTGGTTGCTCGAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9995#0 ACCAGCCGCCGCCGCCGCCGCCGCCGACTGCTCGGCGATCATGGTCGGCGACCGAAAGCG 60
consensus_9995#1 ------------------------------------------------------------
consensus_9995#0 CCCGGCTCCCTTCGCCGGATTCTCCCCGTTCGCTCGCTCCCTCCTCTTCTCCGCCTCCTC 120
consensus_9995#1 ------------------------------------------------------------
consensus_9995#0 CTCTAAACCACTACCTCCCCCCGAGGATCCACCCGCCGCCGCCGCCGACGAAATCCCTTC 180
consensus_9995#1 ------------------------------------------------------------
consensus_9995#0 AGGAATCGCCGGCTCCAGTCGCGATATGCCGCCGCCCAAGCGCGCCAAGCGGGCCGAGCC 240
consensus_9995#1 ------------------------------------------------------------
consensus_9995#0 TTCCAGCGACGAGGAGCGCTACAGCAGTGACGACGAGAGCTACAGCAGCGACTCCGACGA 300
consensus_9995#1 ------------------------------------------------------------
consensus_9995#0 CAGCGACGACGCGTCGGAGGAGCTCGATACGGTGCAAGCGGACTTCGCCTTCTACGACCC 360
consensus_9995#1 ------------------------------------------------------------
consensus_9995#0 CAAGCCCGGCGACTTCCATGGCGTCAAGCTGCTGCTCAAGACCTACCTCGACTCCAAGCC 420
consensus_9995#1 ------------------------------------------------------------
consensus_9995#0 GTGGGATCTCACTGGCTTCGTCGACCTCATCCTTGAGCAGACCACGGTGGGTACGGTTGT 480
consensus_9995#1 ------------------------------------------------------------
consensus_9995#0 CAAGATTGCTGACGATGAAGAGGATGGTGAAGGAAATGGTGCTGATGGAAGCAGCACTGG 540
consensus_9995#1 ------------------------------------------------------------
consensus_9995#0 TGGCAATGACGATCTGTTTGGTCTCATTAGCGTGCTTAATCTTGGAAGATACAGTGAGCA 600
consensus_9995#1 ------------------------------------------------------------
consensus_9995#0 CCGCTGTATGAAGGATCTTAAGGATTACCTGCTTGCTGTTTGTGGTGACAAGGATACCAA 660
consensus_9995#1 ------------------------------------------------------------
consensus_9995#0 GAAGAAGCTCAAGCAAATGCTGGGGGACAAAGCACCTGATGTGGGTCTGCTTGTGTGCCG 720
consensus_9995#1 ------------------------------------------------------------
consensus_9995#0 CCGTTTTGTGAATTTCCCATATGAACTTGTGCCCAAGATGTATGAAT--CGTTATTTGAC 778
consensus_9995#1 ---------------CCTGTTGTAACTGG--CTTACGCTGTATGAATAACACCGTCTT-T 42
** * **** * * * * ********* * * *
consensus_9995#0 GAAGTTTCATGGGCCACAGAAGACGAGCCAACACAAGAACTCCGGGACTCCTTCCGGTTC 838
consensus_9995#1 GCCATCTGGTGTAGAGGAAAACTCCAGC-AAAGCAAAAGGCAAAGAAC--CGTGCAGAAG 99
* * * ** * ** * *** ** *** * * ** * * * *
consensus_9995#0 AAGCAGTACCTAATGGTTGTCAGAGTACTTGAGAGGAAAACTCCAGCAAAGCAAAAGGCA 898
consensus_9995#1 AGGATGAGCCTATTATCTATCCTAAGGTAGAAGACGAAATTTTTCGCGAGGTATCAAGCA 159
* * * **** * * ** * *** **** * ** * * * * ***
consensus_9995#0 AAGAACAGTACAGAAGA----GGATGAGCCTATTAT---------CTATCCTAAGTTAGA 945
consensus_9995#1 GGACATGGTACTGACAATTTGAGATTAATTTTTCTTTGTGCAGTTCTGTTTGATGTGGTA 219
* **** ** * *** * * * * ** * * ** *
consensus_9995#0 AGACGAAATTTTTCGCGAGCTTTCTTCATGGTCGTTCACTTTCCCAATACGTTCTGAACA 1005
consensus_9995#1 ACAAAACTTTTTTCCTCAGCTTTTTTCATGGTCGTTCACTTTCCCAATACGTTTTGAACC 279
* * * ****** ****** ***************************** *****
consensus_9995#0 ATCGGCTCAGCAAGAGATGAAGAATTACAAGGAGATGGGCTTAGTGATGGCCGTCAAAGC 1065
consensus_9995#1 ATCGGCTCAGCCAGAGATGAAGAATTTCAAGGAGATGGGCTTAGTGATGGCCGTCAAAGC 339
*********** ************** *********************************
consensus_9995#0 TGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATCTACTATCTGAATAGTTCTCTCC 1125
consensus_9995#1 TGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATTTACTATTTGAATAGTTCTCTCC 399
************************************* ****** ***************
consensus_9995#0 ACGCATTGTAGGTCGTGTGGAATTTTGCTGCTGTCCACATGATATTGGAACCTCCATATC 1185
consensus_9995#1 CCGCCTTGTAGGTCGTGTGGAATTTTGCTGCTGTCCCCCTGATATTGGAACCTCCATATC 459
*** ******************************* * *********************
consensus_9995#0 TTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCA 1245
consensus_9995#1 TTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCA 519
************************************************************
consensus_9995#0 AAGCCCTAATTGAATTGCTAG-CATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGGA 1304
consensus_9995#1 AAGCCCTAATTGAATTGCTAGGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGAA 579
********************* ************************************ *
consensus_9995#0 AATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTT------ 1358
consensus_9995#1 AATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTTTGGTTG 639
******************************************************
consensus_9995#0 -------------------------
consensus_9995#1 CTCGAAAAAAAAAAAAAAAAAAAAA 664
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||