These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1060 fasta sequence [NTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACATCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATTGTATGTTTGGATGTTTTCTCCAATGCGTTGCTTTTGGCTTCATTCTCTTTAGATTCTTCCGTTGATTTTCTCTCTGCTGGATATTCGTTTGCTAGTGTTTTTTCGTTCATTGTGACGTTATTGTTTTGGTTTATCGTTATTATGTTTTCATCTTGTTCCTTGCTTTTCAGGTTGTCTCTGGCGAATATTTGCAATGGACTATCGGGTTGTTCGTTAGAGGATATGTTTGTTTCTTCTGAGTATCCTGTAGCAATGTATCCTTTTGTGTTTGAAGACCACTCCATATGTTTAGGTGTGCTATTTATGCAGTCTTTGATAAGCGTTTCTGATTTTAGTTTACTTGGTTCGATGGTTTCCAATTCTTCACTTGATAAACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTTGTCGAGGTGGTGGTAG-AATCAAAG-AACTGATGAACATTTTCTCGTCATCAATATCGNGAGGCATTCTCGAAATATATGATATTTTATCTTGTGAGANATCATCAT] [-] EMBL CD202762 [NTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACATCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGACGTCTTGCACCGGTGACGTGGATCGGCCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATTGTATGTTTGGATGTTTTCTCCAATGCGTTGCTTTTGGCTTCATTCTCTTTAGAT ] [+] EMBL CD154815 [ CAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATTGTATGTTTGGATGTTTTCTCCAATGCGTTGCTTTTGGCTTCATTCTCTTTAGATTCTTCCGTTGATTTTCTCTCTGCTGAATATTCGTTTGCTAGTGTTTTTTCGTT ] [-] EMBL CD091779 [ GTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCATGTATTTGGAAATTGTATGTTTGGATGTTTTCTCCAATGCGTTGCTTTTGGCTTCATTCTCTTTAGATTCTTCCGTTGATTTTCTCTCTGCTGGATATTCGTTTGCTAGTGTTTTTTCGTTCATTGTGACGTTATTGTTTTGGTTTATCGTTATTATGTTTTCATCTTGTTCCTTGCTTTTCAGGTTGTCTCTGGCGAATATTTGCAATGGACTATCGGGTTGTTCGTTAGAGGATATGTTTGTTTCTTCTGAGTAACCTGTAGCAATGTATCCTTTTGTGTTTGAAGACCACTCCATATGTTTAGGTGTGCTATTTATGCAGTCTTTGATAAGCGT ] [-] EMBL CD148619 [ TCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATTGTATGTTTGGATGTTTTCTCCAATGCGTTGCTTTTGGCTTCATTCTCTTTAGATTCTTCCGTTGATTTTCTCTCTGCTGGATATTCGTTTGCTAGTGTTTTTTCGTTCATTGTGACGTTATTGTTTTGGTTTATCGTTATTATGTTTTCATCTTGTTCCTTGCTTTTCAGGTTGTCTCTGGCGAATATTTGC ] [+] EMBL CD061469 [ CGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCGTCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATTGTATGTTTGGATGTTTTCTCCAGTGCGTTGCTTTTGG ] [+] EMBL CD139968 [ TGGCGAATATTTGCAATGGACTATCGGGTTGTTCGTTAGAGGATATGTTTGTTTCTTCTGAGTATCCTGTAGCAATGTATCCTTTTGTGTTTGAAGACCACTCCATATGTTTAGGTGTGCTATTTATGCAGTCTTTGATAAGCGTTTCTGATTTTAGTTTACTTGGTTCGATGGTTTCCAATTCTTCACTTGATAAACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTTGTCGAGGTGGTGGTAG AATCACAG AACTGATGAACATT ] [+] EMBL CD140018 [ TGGCGAATATTTGCAATGGACTATCGGGTTGTTCGTTAGAGGATATGTTTGTTTCTTCTGAGTATCCTGTAGCAATGTATCCTTTTGTGTTTGAAGACCACTCCATATGTTTAGGTGTGCTATTTATGCAGTCTTTGATAAGCGTTTCTGATTTTAGTTTACTTGGTTCGATGGTTTCCAATTCTTCACTTGATAAACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTTGTCGAGGTGGTGGTAGAAATC AAG AA ] [+] EMBL CD070517 [ GCAGTCTTTGATAAGCGTTTCTGATTTTAGTTTACTTGGTTCGATGGTTTCCAATTCTTCACTTGATAAACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTTGTCGAGGTGGTGGTAG AATCAAAG AACTGATGAACATTTTCTCGTCATCAATATCGNGAGGCATTCTCGAAATATATGATATTTTATCTTGTGAGANATCATCAT] [+] EMBL CD070532 [ GCAGTCTTTGATAAGCGTTTCTGATTTTAGTTTGCTTGGTTCGATGGTTTCCAATTCTTCACTTGATAAACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTTGTCGAGGTGGTGGTAG AATCAAAG AACTGATGAACATTTTCTCGTCATCAATATCGGGA ] [+] EMBL CD070572 [ GCAGTCTTTGATAAGCGTTTCTGATTTTAGTTTACTTGGATCGATGGTTTCCAATTCTTCACTTGATANACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTTGTCGAGGTGGTGGTAG AATCATAGAAACTGATG ACATTTTCTCGTCATCAA ] [+] EMBL CD201598 [ nncncaTCTGATTTTNNTTTACTTGGTTCNATGGTTTCCAATTCTTCACTTGATAAACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCANGGTTGTCAAGGTG ] consensusID : consensus_10006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [CTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATNTGTATGTTTGGAGAGGCACAGAN] [-] EMBL CD112885 [CTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATNTGTATGTTTGGAGAGGCACAGAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10006#0 ----NTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACAT 56 consensus_10006#1 CTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACAC 60 ****************************************************** consensus_10006#0 CAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCT 116 consensus_10006#1 CAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCT 120 ************************************************************ consensus_10006#0 TTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACA 176 consensus_10006#1 TTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACA 180 ************************************************************ consensus_10006#0 TTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTG 236 consensus_10006#1 TTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTG 240 ************************************************************ consensus_10006#0 CAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATA 296 consensus_10006#1 CAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATA 300 ************************************************************ consensus_10006#0 GTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGC 356 consensus_10006#1 GTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGC 360 ************************************************************ consensus_10006#0 CCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATG 416 consensus_10006#1 CCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATG 420 ************************************************************ consensus_10006#0 TGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATC 476 consensus_10006#1 TGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATC 480 ************************************************************ consensus_10006#0 CATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATT-GTATGTTTGGATG 535 consensus_10006#1 CATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATNTGTATGTTTGGAGA 540 ********************************************* *********** consensus_10006#0 TTTTCTCCAATGCGTTGCTTTTGGCTTCATTCTCTTTAGATTCTTCCGTTGATTTTCTCT 595 consensus_10006#1 GGCACAGAN--------------------------------------------------- 549 * consensus_10006#0 CTGCTGGATATTCGTTTGCTAGTGTTTTTTCGTTCATTGTGACGTTATTGTTTTGGTTTA 655 consensus_10006#1 ------------------------------------------------------------ consensus_10006#0 TCGTTATTATGTTTTCATCTTGTTCCTTGCTTTTCAGGTTGTCTCTGGCGAATATTTGCA 715 consensus_10006#1 ------------------------------------------------------------ consensus_10006#0 ATGGACTATCGGGTTGTTCGTTAGAGGATATGTTTGTTTCTTCTGAGTATCCTGTAGCAA 775 consensus_10006#1 ------------------------------------------------------------ consensus_10006#0 TGTATCCTTTTGTGTTTGAAGACCACTCCATATGTTTAGGTGTGCTATTTATGCAGTCTT 835 consensus_10006#1 ------------------------------------------------------------ consensus_10006#0 TGATAAGCGTTTCTGATTTTAGTTTACTTGGTTCGATGGTTTCCAATTCTTCACTTGATA 895 consensus_10006#1 ------------------------------------------------------------ consensus_10006#0 AACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTT 955 consensus_10006#1 ------------------------------------------------------------ consensus_10006#0 GTCGAGGTGGTGGTAGAATCAAAGAACTGATGAACATTTTCTCGTCATCAATATCGNGAG 1015 consensus_10006#1 ------------------------------------------------------------ consensus_10006#0 GCATTCTCGAAATATATGATATTTTATCTTGTGAGANATCATCAT 1060 consensus_10006#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||