These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10013#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1819 fasta sequence [TGGTACTGCAACGAAATTCTCAGAAGGATCGAGGGTTCAGGACCTATTTCAGTGATAGAGTTCAACAAAGAAGGCGCACATCTGGCTTATGGAAATTCTGATGGGATTGTTAGTGTCATTGAAATCGGCCAAGCGGATCTCTCTGAAATAACACACCATCGTCATTCCTGTTCAAAACCGTATCAAGTTTTTTTAAGCCATGAACCACAGTTTGACTGTCTGAAGTCCCAAGCAATAGAGGAGAAAATCAATCTTATACGCTGGCTCCCGAA-ATCTGGGCTTTCCCACTTCTTGTTATCTTCCAATGAACGTACTATAAAACTTTGGCAGTTGACTGAACTGCCGACACAGTCGTTTACAAATTTGAATTTCCCTGTTGAATCGGGTTGCCGACGTAAAGTTGTTATCAGGTCATTATCCGATATCAAAGTCCCTGTCTGTTTGAAGAATTATGGAAATACAAATATACGTGTACAGAATAAAAAAGTATTTGCTCGTGCCCACGGCTTTTCAATAGTCGGTTTGTCACCCTCTGCTGACCGTGAGACTTTTTTTTCTGCCGATCCACTGAGGATTAATATGTGGAACTTGGAAGTTACTAATGAGGTGTTCAGTGTCATTGATCATATGCTTGATCGTTTGGACGATCGCTCACATCTGATCACTGGAATTAGTTGTAGCAATTCT-TCCCCATCATTATTTGCATATGGCACTAACAGAGGTTCAATTTTTCT-TTGTGACACACGGTCAAGCTCTCTTT-GTGATCACGCTTCTCTTGTTTTTCATAGTCTTGCTGCAGACGAATCAGATGTGCTTACCATTCTCACTAATTCCGTTTCCGACTTGAAATTTGGCCAATGCTCCGATTATATTATATTTTCCCGTGATTATTTGAGCGTTAAAACTTGGGATTCACGAATGCCAACTCAACCAGTTGAAGTTTATCCTGTCCAACGTCATTTAAAAAAGCATTTAGCTGTTTTATACGAAAGTGAATTACTTTTTGATGATTTCAAACTAACTATATCTTCAAATGATCGTTGTATAATGACTGGTTCATATAATAATACTGTGAAAGTATTTGATCGACAAAATCCAATTGAAGGTTCATATAAACTTATTATGCAAGATGAAGATATGAATACATTCCATGATACATTTCGTACAACTGATGATAATACTTCTGTATTTGTTTCACCTATATCATCATCAACATCATCACCTGACGGTACTGAGTTAACATGGCCACGAAGGATACATGATGATTTGATTGATATCACTGAAAACTTTACCAGTTCATCATTT-TCAGAT-A-TAATACTAGTACTAATAATAATCCCAATTTCAATGAATCCATATTCACTGTAGATGTTGGACGTAAATGGTTACAAGTTAGTTGGAAACCTTGGTCTACTGTAGCTGCTGTCAGTCATACAGATGGTATTCACCTTATTGAAGCAATAAATTAATAGAATAAGTGCAATTTTTATACGATTTCTATATATATATATGTATATATATACATACATCTTTTCTTCCAGAAAAAAATACATTCCTAGTTATGTTATTTTTGTCGGCCTTGTTGTCTTCGGTCCTTATTTTTTAGGAAAAAAAGTATTTTTTACCAGAAATATTATTGGCCTTATAATGATGAACTTGCTCCGACTTATAAGTTACTTTGTTTTATTTCTTCTGTCTTGAACTATCTGTTTTTTCTTCAGCAGATAGTCACAATTGACATTCAACGCTTCGTCTTCTTCTTTCTCCTCATTTGTTCTCTCTTCTGTATTACTACTTTTACTATAACTGTTGTCATCTGTTG] [+] EMBL CD066515 [TGGTACTGCAACGAAATTCTCAGAAGGATCGAGGGTTCAGGACCTATTTCAGTGATAGAGTTCAACAAAGAAGGCGCACATCTGGCTTATGGAAATTCTGATGGGATTGTTAGTGTCATTGAAATCGGCCAAGCGGATCTCTCTGAAATAACACACCATCGTCATTCCTGTTCAAAACCGTATCAAGTTTTTTTAAGCCATGAACCAC ] [+] EMBL AI977139 [ CTCTCTGAAATAACACACCATCGCCATTCCTGTTCAAAACCGTATCAAGTTTTTTTAAGCCATGAACCAGAGTTTGACTGTCTGAAGTCCCAAGCAATAGAGGAGAAAATCAATCTTATACGCTGGCTCCCGAA ATCTGGGCTTTCCCACTTCTTGTTATCTTCCAATGAACGTACTATAAAACTTTGGCAGTTGACTGAACTGCCGACACAGTCGTTTACAAATTTGAATTTCCCTGTTGAATCGGGTTGCCGACGTAAAGTTGTTATCAGGTCATTATCCGATATCAAAGTCCCTGTCTGTTTGAAGAATTATGGAAATACAAATATACGTGTACAGAATAAAAAAGTATTTGCTCGTGCCCACGGCTTTTCAATAGTCGGTTTGTCACCCTCTGCTGACCGTG ] [-] EMBL CD166339 [ AGAAAATCAATCTTATACGCTGGCTCCCGAA ATCTGGGCTTTCCCACTTCTTGTTATCTTCCAATGAACGTACTATAAAACTTTGGCAGTTGACTGAACTGCCGACACAGTCGTTTACAAATTTGAATTTCCCTGTTGAATCGGGTTGCCGACGTAAAGTTGTTATCAGGTCATTATCCGATATCAAAGTCCCTGTCTGTTTGAAGAATTATGGAAATACAAATATACGTGTACAGAATAAAAAAGTATTTGCTCGTGCCCACGGCTTTTCAATAGTCGGTTTGTCACCCTCTGCTGACCGTGAGACTTTTTTTTCTGCCGATCCACTGAGGATTAATATGTGGAACTTGGAAGTTACTAATGAGGTGTTCAGTGTCATTGATCATATGCTTGATCGTTTGGACGATCGCTCACATCTGATCACTGGAGTTAGTTGTAGCAATTCTATCCC ] [-] EMBL CD125878 [ AATCAATCTTATACGCTGGCTCCCGAATATCTGGGCTTTCCCACTTCTTGTTATCTTCCAATGAACGTACTATAAAACTTTGGCAGTTGACTGAACTGCCGACACAGTCGTTTACAAATTTGAATTTCCCTGTTGAATCGGGTTGCCGACGGAAAGTTGCAATCAGGTCATTATCCGATATCGAAGT ] [-] EMBL CD196757 [ TTATCTTCCAATGAACGTACTATAAAACTTTGGCAGTTGACTGAACTGCCGACACAGTCGTTTACAAATTTGAATTTCCCTGTTGAATCGGGTTGCCGACGTAAAGTTGTTATCAGGTCATTATCCGATATCAAAGTCCCTGTCTGTTTGAAGAATTATGGAAATACAAATATACGTGTACAGAATAAAAAAGTATTTGCTCGTGCCCACGGCTTTTCAATAGTCGGTTTGTCACCCTCTGCTGACCGTGAGACTTTCTTCTCTGCCGATCCACTGAGGATTAATATGTGGAACTTGGAAGTTACTAATGAGGTGTTCAGTGTCATTGATCATATGCTTGATCGTTTGGACGATCGCTCACATCTGATCACTGGAATTAGTTGTAGCAATTCT TCCCCATCATTATTTGCATATGGCACTAACAGAGGTTCAATTTTTCT TTGTGACACAC ] [-] EMBL CD196554 [ CTGAGGATTAATATGTGGAACTTGGAAGTTACTAATTAGCTGTTCAGTGTCATCGATCATATGCTTGATCGTTTGGACGATCGCTCACATCTGATCACTGGAATTAGTTGTAGCAATTCT TCCCCACCATTATTTGCATATGGCACTAACAGAGGTTCAATTTTTCTATTGTGACACACGGTCAAGCTCTCTTTCGTG ] [-] EMBL CD066984 [ AGGTGTTCAGTGTCATTGATCATATGCTTGATCGTTTGGACGATCGCTCACATCTGATCACTGGAATTAGTTGTAGCAATTCT TCCCCATCATTATTTGCATATGGCACTAACAGAGGTTCAATTTTTCT TTGTGACACACGGTCAAGCTCTCTTT GTGATCACGCTTCTCTTGTTTTTCATAGTCTTGCTGCAGACGAATCAGATGTGCTTACCATT ] [+] EMBL CD078985 [ ACACGGTCAAGCTCTCTTT GTGATCACGCTTCTCTTGTTTTTCATAGTCTTGCTGCAGACGAATCAGATGTGCTTACCATTCTCACTAATTCCGTTTCCGACTTGAAATTTGGCCAATGCTCCGATTATATTATATTTTCCCGTGATTATTTGAGCGTTAAAACTTGGGATTCACGAATGCCAACTCAACCAGTTGAAGTTTATCCTGTCCAACGTCATTTAAAAAAGCATTTAGCTGTTTTATACGAAAGTGAATTACTTTTTGATGATTTCAAACTAACTATATCTTCAAATGATCGTTGTATAATGACTGGTTCATATAATAATACTGTGAAAGTATTTGATCGACAAAATCCAATTGAAGGTTCATATAAACTTATTATGCAAGATGAAGATATGAATACATTCCATGATACATTTCGTACAACTGATGATAATACTTCTGTATTTGTTTCACCTATACCATCATCAACATCATCACCTGACGGTACTGAGTTAACATGGCCACGAAGGATACATGATGATTTGATTGATATCACTGAAAACTNTACCAGTTCATCATTTNTCAGAT A TAATACTAGTACTAATAATAATCCCAATTTCAATGAATCCATATTCACTGTAGATGTT ] [+] EMBL CD157602 [ TTTGGCCAATGCTCCGATTATATTATATTTTCCCGTGATTATTTGAGCGTTAAAACTTGGGATTCACGAATGCCAACTCAACCAGTTGAAGTTTATCCTGTCCAACGTCATTTAAAAAAGCTTTTAGCTGT ] [+] EMBL CD124579 [ TGAAGATATGAATACATTCCATGATACATTTCGTACAACTGATGATAATACTTCTGTATTTGTTTCACCTATATCATCATCAACATCATCACCTGACGGTACTGAGTTAACATGGCCACGAAGGATACATGATGATTTGATTGATATCACTGAAAACTTTACCAGTTCATCATTT TCAGATAA TAATACTAGTACTAATAATAATCCCAATTTCAATGAATCCATATTCACTGTAGATGTTGGACGTAAATGGTTACAAGTTAGTTGGAAACCTTGGTCTAC ] [+] EMBL CD124745 [ TGAAGATATGAATACATTCCATGATACATTTCGTACAACTGATGATAATACTTCTGTATTTGTTTCACCTATATCATCATCAACATCATCACCTGACGGTACTGAGTTAACATGGCCACGAAGGATACATGATGATTTGATTGATATCACTGAAAACTTTACCAGTTCATCATTT TCAGAT ATTAATACTAGTACTAATAATAATCCCAATTTCAATGAATCCATATTCACTGTAGATGTTGGACGTAAATGGTTACAAGTTAGTTGGAAACCTTGGTCTAC ] [-] EMBL CD073436 [ ATGGCCACGAAGGATACATGATGATTTGATTGATATCACTGAAAACTTTACCAGTTCATCATTT TCAGATAA TAATACTAGTACTAATAATAATCCCAATTTCAATGAATCCATATTCACTGTAGATGTTGGACGTAAATGGTTACAAGTTAGTTGGAAACCTTGGTCTACTGTAGCTGCTGTCAGTCATACAGATGGTATTCACCTTATTGAAGCAATAAATTAATAGAATAAGTGCAATTTTTATACGATTTCTATATATATATATGTATATATATACATACATCTTTTCTTCCAGAAAAAAATACATTCCTAGTTATGTTATTTTTGTCGGCCTTGTTGTCTTCGGTCCTTATTTTTTAGGAAAAAAAGTATTTTTTACCAGAAATATTATTGGCCTTATAATGATGAACTTGCTCCGACTTATAAGTTACTTTGTTTTATTTCTTCTGTCTTGAACTATCTGTTTTTTCTTCAGCAGATAGTCACAATTGACATTCAACGCTTCGTCTTCTTCTTTCTCCTCATTTGTTCTCTCTTCTGTATTACTACTTTTACTATAACTGTTGTCATCTGTTG] consensusID : consensus_10013#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence [ACAAAGAAGGCACACATCTGGCTTATGGAGATTCTGATGGGATTGTTAGTGTCATTGAAATCGGCCAAGCGGTTTGTAGACCTAGATTTTTGACGATAATGCTAGAATTAGGATCTCTCTGAAATAACACACCATCGCCATTCCTGTTCAAAACCGTATCAAGTTTTTTTAAGCCATGAACCAGAGTTTGACTGTCTGAAGTCCCAAGCAATAGAGGAGAAAATCAATCTCATACGCTGGCTCCCGAAATCTGGGCTTTCCCACTTCTTGTTATCTTCCAATGGTAAGCTTAAGCTTTCTAATAATATTACTATGGAAAGAGTTGTTCGAGGATATTAGTATATTTTTCN] [-] EMBL CD194333 [ACAAAGAAGGCACACATCTGGCTTATGGAGATTCTGATGGGATTGTTAGTGTCATTGAAATCGGCCAAGCGGTTTGTAGACCTAGATTTTTGACGATAATGCTAGAATTAGGATCTCTCTGAAATAACACACCATCGCCATTCCTGTTCAAAACCGTATCAAGTTTTTTTAAGCCATGAACCAGAGTTTGACTGTCTGAAGTCCCAAGCAATAGAGGAGAAAATCAATCTCATACGCTGGCTCCCGAAATCTGGGCTTTCCCACTTCTTGTTATCTTCCAATGGTAAGCTTAAGCTTTCTAATAATATTACTATGGAAAGAGTTGTTCGAGGATATTAGTATATTTTTCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10013#0 TGGTACTGCAACGAAATTCTCAGAAGGATCGAGGGTTCAGGACCTATTTCAGTGATAGAG 60 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 TTCAACAAAGAAGGCGCACATCTGGCTTATGGAAATTCTGATGGGATTGTTAGTGTCATT 120 consensus_10013#1 ----ACAAAGAAGGCACACATCTGGCTTATGGAGATTCTGATGGGATTGTTAGTGTCATT 56 *********** ***************** ************************** consensus_10013#0 GAAATCGGCCAAGCGG----------------------------------------ATCT 140 consensus_10013#1 GAAATCGGCCAAGCGGTTTGTAGACCTAGATTTTTGACGATAATGCTAGAATTAGGATCT 116 **************** **** consensus_10013#0 CTCTGAAATAACACACCATCGTCATTCCTGTTCAAAACCGTATCAAGTTTTTTTAAGCCA 200 consensus_10013#1 CTCTGAAATAACACACCATCGCCATTCCTGTTCAAAACCGTATCAAGTTTTTTTAAGCCA 176 ********************* ************************************** consensus_10013#0 TGAACCACAGTTTGACTGTCTGAAGTCCCAAGCAATAGAGGAGAAAATCAATCTTATACG 260 consensus_10013#1 TGAACCAGAGTTTGACTGTCTGAAGTCCCAAGCAATAGAGGAGAAAATCAATCTCATACG 236 ******* ********************************************** ***** consensus_10013#0 CTGGCTCCCGAAATCTGGGCTTTCCCACTTCTTGTTATCTTCCAATGAACGTACTATAAA 320 consensus_10013#1 CTGGCTCCCGAAATCTGGGCTTTCCCACTTCTTGTTATCTTCCAATG---GTAAGCTTAA 293 *********************************************** *** * ** consensus_10013#0 ACTTTGGCAGTTGACTGAACTGCCGACACAGTCGTTTACAAATTTGAATTTCCCTGTTGA 380 consensus_10013#1 GCTTT--CTAATAATATTACTATGGAAAGAGTTGTTCGAGGATATTAGTATATTTTTCN- 350 **** * * * *** ** * *** *** ** * * * * * * consensus_10013#0 ATCGGGTTGCCGACGTAAAGTTGTTATCAGGTCATTATCCGATATCAAAGTCCCTGTCTG 440 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 TTTGAAGAATTATGGAAATACAAATATACGTGTACAGAATAAAAAAGTATTTGCTCGTGC 500 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 CCACGGCTTTTCAATAGTCGGTTTGTCACCCTCTGCTGACCGTGAGACTTTTTTTTCTGC 560 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 CGATCCACTGAGGATTAATATGTGGAACTTGGAAGTTACTAATGAGGTGTTCAGTGTCAT 620 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 TGATCATATGCTTGATCGTTTGGACGATCGCTCACATCTGATCACTGGAATTAGTTGTAG 680 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 CAATTCTTCCCCATCATTATTTGCATATGGCACTAACAGAGGTTCAATTTTTCTTTGTGA 740 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 CACACGGTCAAGCTCTCTTTGTGATCACGCTTCTCTTGTTTTTCATAGTCTTGCTGCAGA 800 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 CGAATCAGATGTGCTTACCATTCTCACTAATTCCGTTTCCGACTTGAAATTTGGCCAATG 860 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 CTCCGATTATATTATATTTTCCCGTGATTATTTGAGCGTTAAAACTTGGGATTCACGAAT 920 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 GCCAACTCAACCAGTTGAAGTTTATCCTGTCCAACGTCATTTAAAAAAGCATTTAGCTGT 980 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 TTTATACGAAAGTGAATTACTTTTTGATGATTTCAAACTAACTATATCTTCAAATGATCG 1040 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 TTGTATAATGACTGGTTCATATAATAATACTGTGAAAGTATTTGATCGACAAAATCCAAT 1100 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 TGAAGGTTCATATAAACTTATTATGCAAGATGAAGATATGAATACATTCCATGATACATT 1160 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 TCGTACAACTGATGATAATACTTCTGTATTTGTTTCACCTATATCATCATCAACATCATC 1220 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 ACCTGACGGTACTGAGTTAACATGGCCACGAAGGATACATGATGATTTGATTGATATCAC 1280 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 TGAAAACTTTACCAGTTCATCATTTTCAGATATAATACTAGTACTAATAATAATCCCAAT 1340 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 TTCAATGAATCCATATTCACTGTAGATGTTGGACGTAAATGGTTACAAGTTAGTTGGAAA 1400 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 CCTTGGTCTACTGTAGCTGCTGTCAGTCATACAGATGGTATTCACCTTATTGAAGCAATA 1460 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 AATTAATAGAATAAGTGCAATTTTTATACGATTTCTATATATATATATGTATATATATAC 1520 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 ATACATCTTTTCTTCCAGAAAAAAATACATTCCTAGTTATGTTATTTTTGTCGGCCTTGT 1580 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 TGTCTTCGGTCCTTATTTTTTAGGAAAAAAAGTATTTTTTACCAGAAATATTATTGGCCT 1640 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 TATAATGATGAACTTGCTCCGACTTATAAGTTACTTTGTTTTATTTCTTCTGTCTTGAAC 1700 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 TATCTGTTTTTTCTTCAGCAGATAGTCACAATTGACATTCAACGCTTCGTCTTCTTCTTT 1760 consensus_10013#1 ------------------------------------------------------------ consensus_10013#0 CTCCTCATTTGTTCTCTCTTCTGTATTACTACTTTTACTATAACTGTTGTCATCTGTTG 1819 consensus_10013#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||