These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10018#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 702 fasta sequence [TGCATGACGCATGGGGAGTTGGTGCTGT-GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA-CCACCT-TTGCCAGTGTTTTTGCCAAG-AACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGG-TGGAAA-TCGCTGAAATTA--A--TGAAATAAGACAGCTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCTAATTTTTGTACAGAAAATCCTAAGTTTAATTGTATACAACAATTGATCTGATTATTTCTCAAACATAAAACACAATAATAGAAATTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD078545 [TGCATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CCACCT TTGCCAGTGTTTTTGCCAAG AACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGG TGGAAA TCGCTGAAATTA A TGAAATAAGACAGCTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCTAATTTTTGGACAGAAAATCCTAAGTTTAATTGTATACCACAATTGATCTGATTATTTCTCANACATAANACACCATANTAGGAATT ] [+] EMBL CD140202 [ ATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACCACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CCACCT TTGCCAGTGTTTTTGCCAAG AACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGG TGGAAA TCGCTG ] [+] EMBL CD196269 [ ATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTAGAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CCACCTNNTG CAGTGTTTTT ] [+] EMBL CD140282 [ ATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGatcctgttc ] [+] EMBL CD196258 [ ATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGG CCA CCACCT NTGCCAGTGTTTTTGCCAAGAAACA TTGGAAATCCTGCGTNCATCATAGATGCGCCGCTGGNTGGAAN TCGCTNGAATTA ANNTG AAT AGACAGCTTGCAAAGGAAAATGCTGTATTTGNTCATGNAA ] [+] EMBL CD196325 [ ATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGG CCA CCACCT TTGCCAGTGTTTTTGCCAAGAAACA TTGGAAAATCTGCGTCAATCATAGATGCGCCGCTGGNTGG AA TCGCTGAAANTANNN TG AAT AGACAGCTTGCAAAGG AAATGCTGTA NTGNTCATGA ] [+] EMBL CD196324 [ ATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCACCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CACCT TTGCCAGTGTTTTTGCCAAG AACA TTGGAAATCCTGCGTNCATCATAGATGCGCCGCTGG TGGAAANTCGCTG AATTN A TGAAAATAGACAGC TGCAANGNAAAATGCTGTATTTGNTCnt ] [-] EMBL CD196294 [ TGACGCAT GGGAGTT GTGCTGTNNGTCTTTGTGCAATTTCAGGAAGTGACGAAGATGAGGAGGCTGACCGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTGTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CCACCT TTGCCAGTGTTTTTGCCAAG AACATTTGGAAATCCTGCGTCAATCATAGATGCG CGCTGG TGGAAA TCGCTGAAATTA A TGAAATAAGACAGCTTGCAAAGGAAAATGCTGTATTTGTTCATG ] [-] EMBL CD073012 [ GGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGNTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CCACCT TTGCCAGTGTTTTTGCCAAG AACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGG TGGAAA TCGCTGAAATTA A TGAAATAAGACAGCTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCTAATTTTTGTACAGAAAATCCTAAGTTTAATTGTATACAACAATTGATCTGATTATTTCTCAAACATAAAACACAATAATAGAAATTA ] [-] EMBL AI395704 [ AAGT GTTGATGCTTGAGCAACAGATTACAATCCCTTAGATTCACAAGAACATAGTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CCACCT TTGCCAGTGTTTTTGCCAAG AACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGG TGGAAA TCGCTGAAATTA A TGAAATAAGACAGCTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCTAATTTTTGTACAGAAAATCCTAAGTTTAATTGTATACAACAATTGATCTGATTATTTCTCAAACATAAAACACAATAATAGAAATTAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AI395269 [ aggCAGA TACATTTCCCTAGATTCACANGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCANCCA CT TTGCCAGTGTTTTTGCCAAG AACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGG TGGAAA TCACTGAAATTA A TGAAATAAGACAGCTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCTAATTTTTGTACAGAAAATCCTAAGTTTAATTGTATACAACAATTGATCTGATTATTTCTCAAACATAAAACACAATAATAGAAATTAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_10018#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [GGAGTTGGTGCTGTGGTCTTTGTGCAAATTCAGGAAGTGACGAACTCCTGAAGTGCCCGAATGACGTACTACTGTTGAGAAGAGGAGCGAAAAATATTCAGTCTTATGAACACTTCAATAACAACAGTGTTTAAAGTGGATTTACAACCACGAACTACAGTATTTCGCTTCGTAGTTGATTGATACATGCCTATTTTGCTAGTAGAGAAAGGAAGATCATGTGATTTATTGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACGGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCACCACCTTTGCCAGTGTTTTTGCCAAGAACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGGGTGGAATCGCTGAAATAAATGAATAGACAGCTTGCANAGGANATGCTGTA] [+] EMBL CD154416 [GGAGTTGGTGCTGTGGTCTTTGTGCAAATTCAGGAAGTGACGAACTCCTGAAGTGCCCGAATGACGTACTACTGTTGAGAAGAGGAGCGAAAAATATTCAGTCTTATGAACACTTCAATAACAACAGTGTTTAAAGTGGATTTACAACCACGAACTACAGTATTTCGCTTCGTAGTTGATTGATACATGCCTATTTTGCTAGTAGAGAAAGGAAGATCATGTGATTTATTGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACGGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCACCACCTTTGCCAGTGTTTTTGCCAAGAACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGGGTGGAATCGCTGAAATAAATGAATAGACAGCTTGCANAGGANATGCTGTA] consensusID : consensus_10018#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [TTTTTTTTTTTTTTTTTTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCCAATTT] [+] EMBL AI395400 [TTTTTTTTTTTTTTTTTTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCCAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10018#0 TGCATGACGCATGGGGAGTTGGTGCTGTGGTCTTTGTGCAAATTCAGGAAGTGACGAAGA 60 consensus_10018#2 ------------------------------------------------------------ consensus_10018#1 ------------------------------------------------------------ consensus_10018#0 TGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACA 120 consensus_10018#2 ------------------------------------------------------------ consensus_10018#1 ------------------------------------------------------------ consensus_10018#0 GCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATAT 180 consensus_10018#2 ------------------------------------------------------------ consensus_10018#1 ------------------------------------------------------------ consensus_10018#0 TAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGC 240 consensus_10018#2 ------------------------------------------------------------ consensus_10018#1 ---------------------------------------------GGAGTTGGTGCTGTG 15 consensus_10018#0 AACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGA 300 consensus_10018#2 ------------------------------------------------------------ consensus_10018#1 GTCTTTGTGCAAATTCAGGAAGTGACGAACTCCTGAAGTGCCCGAATGACGTACTACTGT 75 consensus_10018#0 AAGCATAGCTCGACAGCCTTTAGGCCCACCACCTTTGCCAGTGTTTTTGCCAAGAACATT 360 consensus_10018#2 ------------------------------------------------------------ consensus_10018#1 TGAGAAGAGGAGCGAAAAATATTCAGTCTTATGAACACTTCAATAACAACAGTGTTTAAA 135 consensus_10018#0 TGGAAATCCTGCGTCAATCATAGATGCGCCGCTGGTGGAAATCGCTGAAATTAATGAAAT 420 consensus_10018#2 ---------------------------------------------------TTTTTTTTT 9 consensus_10018#1 GTGGATTTACAACCACGAACTACAGTATTTCGCTTCGTAGTTGATTGATACATGCCTATT 195 * consensus_10018#0 AAGACAGCTTGCAAAGGAAAATGCTGT-ATTTGTTCATGAAATGACAACACAAGAAAAGG 479 consensus_10018#2 TTTTTTTTTTGCAAAGGAAAATGCTGT-ATTTGTTCATGAAATGACAACACAAGAAAAGG 68 consensus_10018#1 TTGCTAGTAGAGAAAGGAAGATCATGTGATTTATTGATGAGGAGGCTGAACGTCAGA-GA 254 ******* ** *** **** ** **** * * ** * * * consensus_10018#0 ATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTT-TACAAGCTTCTC 538 consensus_10018#2 ATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTT-TACAAGCTTCTC 127 consensus_10018#1 CTAATTCCAA-GCCCTCAGCTTTCATACGATGGGACACGGCAGCCATATGGAAGTTTTTC 313 * ** ** **** * * *** * * ** * * * * * * *** ** ** consensus_10018#0 TTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCTAATT 598 consensus_10018#2 TTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCCAATT 187 consensus_10018#1 ATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATG-ATGACAAATA 372 ** ** ** * * *** *** * * * * *** ** * *** consensus_10018#0 TTTGTACAGAAAATCCTAAGTTTAATTGTATACAACAATTGATCTGATTATTTCTCAAAC 658 consensus_10018#2 T----------------------------------------------------------- 188 consensus_10018#1 TAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAG 432 * consensus_10018#0 ATAAAACACAATAATAGAAATTAAAAAAAAAAAAAAAAAAAAAA---------------- 702 consensus_10018#2 ------------------------------------------------------------ consensus_10018#1 ATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTT 492 consensus_10018#0 ------------------------------------------------------------ consensus_10018#2 ------------------------------------------------------------ consensus_10018#1 TAGGCCCACCACCTTTGCCAGTGTTTTTGCCAAGAACATTTGGAAATCCTGCGTCAATCA 552 consensus_10018#0 ------------------------------------------------------------ consensus_10018#2 ------------------------------------------------------------ consensus_10018#1 TAGATGCGCCGCTGGGTGGAATCGCTGAAATAAATGAATAGACAGCTTGCANAGGANATG 612 consensus_10018#0 ----- consensus_10018#2 ----- consensus_10018#1 CTGTA 617 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||