These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1208 fasta sequence [AGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGATAATGCTGGCTATGATGCCAGCCTTCAAGATGAACTTGCGGAAGACGCTATAGCAAAAATAAATCAGGTTGTGCGCTCAGGCTCAGATTTTCTCACATCTGATGATTTGGGTTCTGGATTTGGTAGTGAGTTAAGTGACCAATCTACCGAACCGGATACAACCGGGAATTCTGGCACTGATAATTCGGAATCATTTGATAACGCAAGTTGGGTGAACAGATTTCGTCGAACAAGTGATGCANATAAACGCANATCACAGGGTCAAACAAATTACTTGCAACGAAATGAGTATTCCAAG-ATATCACTTCTAGTACCACAGTATCTTCGTTTCTGAACAGTTTTGGGGAAATAGGAAGTGCAGGACAATCGAAGAGATTTGGCCGTAAACATGCAGCCGATACAAATATTTTGGATTTAATCAATACATTGTCAGAAAAAGTTGATAATAATGATGATTTTCTATCAAATTCTGTATCGGATATTAATTCAACCGCTGCAGTATATCCTAGCAATGGTCAAACTCCTAATTCTGTCTCACCTAGCAACAATAAATTATCGAGTTCACCAAATAGTGGAACAAATTTATGGGGATCGGACTTACCAGATCCCAGTGTTGTAGATTCTACTGGTCAGGTTGGCATGAAAGGTCGTTTGGATTCTGTAAGAGAATCTAATCCGACAGATCCTCTTGGCCTTGGTGATCTGGCTAGTTTAACTGTAGCTAACGAGGCTGATTCAGGTTTAAATGGTGATG-TTTGTGACTC-AATTTACCT-GGAAAC-ATTATGAATCATCAGTGTTAGGTGGCTCTGTCAGTAGTAATGCTCAAGTAGACAGTGCAGCAAATATTTCATCGACTTACTCAACTGGTCGTCGACCGTGGGTCCCGAGATATACACTTCGCGGTCACTTTGATGG] [+] EMBL CD201405 [AGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGATAATGCTGGCTATGATGCCAGCCTTCAAGATGAACTTGCGGAAGACGCTATAGCAAAAATAAATCAGGTTGTGCGCTCAGGCTCAGATTTTCTCACATCTGATGATTTGGGTTCTGGATTTGGTAGTGAGTTAAGTGACCAATCTACCGAACCGGATACAACCGGGAATTCTGGCACTGATAATTCGGAATCATTTGATAACGCAAGTTGGGTGAACAGATTTCGTCGAACAAGTGATGCANATAAACGCANATCACAGGGTCAAACAAATTACTTGCAACGAAATGAGTATTCCAAG ATATCACTTCTAGTACCACAG ] [+] EMBL CD201396 [AGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGATAATGCTGGCTATGATGCCAGCCTTCAAGATGAACTTGCGGAAGACGCTATAGCAAAAATAAATCAGGTTGTGCGCTCAGGCTCAGATTTTCTCACATCTGATGATTTGGGTTCTGGATTTGGTAGTGAGTTAAGTGACCAATCTACCGAACCGGATACAACCGGGAATTCTGGCACTGATAATTCGGAATCATTTGATAACGCAAGTTGGGTGAACAGATTTCGTCGAACAAGTGATGCANATAAACGCANATCA ] [+] EMBL CD160274 [ GTCAAACAAATTACTTGCAACGAAATGAGTATTCCAAGAATATCACTTCTAGTACCACAGTATCTTCGTTTCTGAACAGTTTTGGGGAAATAGGAAGTGCAGGACAATCGAAGAGATTTGGCCGTAAACATGCAGCCGATACAAATATTTTGGATTTAATCAATACATTGTCAGAAAAAGTTGATAATAATGATGATTTTCTATCAAATTCTGTATCGGATATTAATTCAACCGCTGCAGTATATCCTAGCAATGGTCAAACTCCTAATTCTGTCTCACCTAGCAACAATAAATTATCGAGTTCACCAAATAGTGGAACAAATTTATGGGGATCGGACTTACCAGATCCCAGTGTTGTAGATTCTACTGGTCAGGTTGGCATGAAAGGTCGTATGGATTCTGTAAGAGAATCTAATCCGACAGA ] [+] EMBL CD160254 [ GTCAAACAAATTACTTGCAACGAAATGAGTATTCCAAGAATATCACTTCTAGTACCACAGTATCTTCGTTTCTGAACAGTTTTGGGGAAATAGGAAGTGCAGGACAATCGAAGAGATTTGGCCGTAAACATGCAGCCGATACAAATATTTTGGATTTAATCAACACATTGTCAGAAAAAGTTGATAATAATGATGATTTTCTATCAAATTCTGTATCGGATATTAATTCAACCGCTGCAGTATATCCTAGCAATGGTCAAACTCCTAATTCTGTCTCACCTAGCAACAATAAATTATCGAGTTCACCAAATAGTGGAACAAATTTATGGGGATCGGACTTACCAGATCCCAGTGTTGTAGATTCTACTGGTCAGGTTGGCATGAAAGGTCGTTTGGATTCTGTAAGAGAATCTA ] [+] EMBL CD164932 [ TTGATAATAATGATGATTTTCTATCAAATTCTGTATCGGATATTAATTCAACCGCTGCAGTATATCCTAGCAATGGTCAAACTCCTAATTCTGTCTCACCTAGCAACAATAAATTATCGAGTTCACCAAATAGTGGAACAAATTTATGGGGATCGGACTTACCAGATCCCAGTGTTGTAGATTCTACTGGTCAGGTTGGCATGAAAGGTCGTTTGGATTCTGTAAGAGAATCTAATCCGACAGATCCTCTTGGCCTTGGTGATCTGGCTAGTTTAACTGTAGCTAACGAGGCTGATTCAGGTTTTAATGGTGATGTTTTGTGACTC AATTTACCTNNGGAAC ANTATGAATCATn ] [+] EMBL AI976037 [ ACTCCTAATTCTGTCTCACCTAGCAACAATAAATTATCGAGTTCACCAAATAGTGGAACAAATTTATGGGGATCGGACTTACCAGATCCCAGTGTTGTAGATTCTACTGGTCAGGTTGGCATGAAAGGTCGTTTGGATTCTGTAAGAGAATCTAATCCGACAGATCCTCTTGGCCTTGGTGATCTGGCTAGTTTAACTGTAGCTAACGAGGCTGATTCAGGTTTAAATGGTGATG TTTGTGACTCAAATTTACCT GGAAACAATTATGAATCATCAGTGTTAGGTGGCTCTGTCAGTAGTAATGCTCAAGTAGACAGTGCAGCAAATATTTCATCGACTTACTCAACTGGTCGTCGACCGTGGGTCCCGAGATATACACTTCGCGGTCACTTTGATGG] [-] EMBL CD189162 [ ATGAAAGGTCGTTTGGATTCTGTAAGAGAATCTAATCCGACAGATCCTCTTGGCCTTGGTGATCTGGCTAGTTTAACTGTAGCTAACGAGGCTGATTCAGGTTTAAATGGTGATG TTTGTGACTCAAATTTACCT GGAAACAATTATGAATCATCAGTGTTAGGTGGCTCTGTCAGTAGTAATGCTCAAGTAGACAGTGCAGCAAATATTTCATCGACTTACTCAACTGGTCGTCGACCGTGGGTCCCGAGATATACACTTCGCGGTCA ] consensusID : consensus_10026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 744 fasta sequence [GGCGCGTTACTGAATGTTATGTCTGGAGTGAGGTTAGGTAATACTGATATCTTCGAACGTGTTGGAGCTGAGCCATATGGAAGACCTGGTGAAGAAACTGGTGCAATAGACACTAAGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGCGCGAATAGCATTCCTTCAAGGTGAGCGTCGTGGACAAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACTGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTACTGAACAGACTCTCGAGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTAAACAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGATAATGCTGGCTATGATGCCAGCCTTCAA] [+] EMBL CD157881 [GGCGCGTTACTGAATGTTATGTCTGGAGTGAGGTTAGGTAATACTGATATCTTCGAACGTGTTGGAGCTGAGCCATATGGAAGACCTGGTGAAGAAACTGGTGCAATAGACACTAAGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGCGCGAATAGCATTCCTTCAAGGTGAGCGTCGTGGACAAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACCGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTACTGAACAGACTCTCGGGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTANACAGTTTCTTCAGGAAAGTGGTTATGCAGATGCTGTCC ] [+] EMBL AI976455 [ CTGGAGTGAGGTTAGATAATACTGATATCTTCGAACGTGTTGGAGCTGAGCCATATGGAAGACCTGGTGAAGAAACTGGTGCAATAGACACTAAGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGCGCGAATAGCATTCCTTCAAGGTGAGCGTCGTGGACAAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACTGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTACTGAACAGACTCTCGAGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTAAACAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTTAGTGTACGCGAAGCACGTGTACGCCA ] [+] EMBL CD169348 [ AAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGCGCGAATAGCATTCCTTCAAGGTGAGCGTCGTGGACAAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACTGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTACTGAACAGACTCTCGAGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTAAACAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTT ] [+] EMBL CD094919 [ AAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACTGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTACTGAACAGACTCTCGAGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTAAACAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGATAATGCTGGCTATGATGCCAGCCTTCAA] [+] EMBL CD095157 [ AAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACTGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTACTGAACAGACTCTCGAGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTAAACAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGAT ] [+] EMBL CD169481 [ AAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACTGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTCCTGAACAGACTCTCGAGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTAAACAGTTTCTTCAGGAAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10026#0 AGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGA 60 consensus_10026#1 ------------------------------------------------------------ consensus_10026#0 ATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGTTTCTT 120 consensus_10026#1 ------------------------------------------------------------ consensus_10026#0 CAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTA 180 consensus_10026#1 ------------------------------------------------------------ consensus_10026#0 TTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCG 240 consensus_10026#1 ------------------------------------------------------------ consensus_10026#0 AAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGATAATGCT 300 consensus_10026#1 ------------------------------------------------------------ consensus_10026#0 GGCTATGATGCCAGCCTTCAAGATGAACTTGCGGAAGACGCTATAGCAAAAATAAATCAG 360 consensus_10026#1 ------------------------------------GGCGCGTTACTGAATGTTATGTCT 24 * *** ** ** * * consensus_10026#0 GTTGTGCGCTCAGGCTCAGATTTTCTCACATCTGATGATTTGGGTTCTGGATTTGGTAGT 420 consensus_10026#1 GGAGTGAGGTTAGGT---AATACTGATATCTTCGAACGTGTTGGAGCTGAGCCATATGGA 81 * *** * * *** ** * * * ** * * ** *** * * consensus_10026#0 GAGTTAAGTGACCAATCTACCGAACCGGATACAACCGGGAATTCTG-GCACTG-ATAATT 478 consensus_10026#1 AGACCTGGTGAAGAAACTGGTGCAATAGACACTAAGGAAAATGCTCCACACTATACCATT 141 **** ** ** * * ** ** * * *** ** **** * *** consensus_10026#0 CGGAATCATTTGATAACGCAAGTTGGGTGAACAGATTTCGTCGAACAAGTGATGCANATA 538 consensus_10026#1 CA-AGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCA 200 * * * * * * * * **** ** * * * * * * ** * consensus_10026#0 AACGCANATCACAGGGTCAAACAAATTACTTGCAACGAAATGAGTATTCCAAGATATCAC 598 consensus_10026#1 ATGGGAAGTC---GAGCGAGCTGAATTGCAAGCGCGAATAGCATTCCTTCAAGGTGA-GC 256 * * * ** * * * **** * ** * * * * * **** * * consensus_10026#0 TTCTAGTACCACAGTATCTTCGTTTCTGAACAGTTTTGGGGAAATAGGAAGT-GCAGGAC 657 consensus_10026#1 GTCGTGGACAAGAAAATCTGAAGCAGGACTTAGTTC-GACGAATTAAAATGTTAGAATAC 315 ** * ** * * **** **** * *** ** * ** * ** consensus_10026#0 AATCGAAGAGATTTGGCCGTAAACATGCAGCCGATACAAATATTTTGGATTTAATCAATA 717 consensus_10026#1 GGTTTGAAACAGGAGCGTGTCAA-ATTTCATCTATACAAA-GCTTCAGTTTCTACTGGCA 373 * * * * * ** ** ** * ******* ** * ** * * consensus_10026#0 CATTGTCAGAAAAAGTTGATAATAATGATGATTTTCTATCAAATTCTGTATCGGATATTA 777 consensus_10026#1 ACCCACCTGCTTCCATCAAACAAACTGATCAA--------GAATCTAGTACCAGAAATGA 425 * * * * * * **** * *** *** * ** ** * consensus_10026#0 ATTCAACCGCTGCA--GTATATCCTAGCAATGGTCAAACTCCTAATTCTGTCTCACCTAG 835 consensus_10026#1 AT-CAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTA--CTG- 481 ** ** ** **** * * * ** * * * ** *** * ** * ** consensus_10026#0 CAACAATAAATTATCGAGTTCACCAAATAGTGGAACAAATTTATGGGGATCGGACTTACC 895 consensus_10026#1 ----AACAGACTCTCGAGAGCAATGTGAAGTGGA--------GAGAGAGTCG-----ATT 524 ** * * * ***** ** ****** * * *** * consensus_10026#0 AGATCCCAGTGTTGTAGATTCTACTGGTCAGGTTGGCATGAAAGGTCGTTTGGATTCTGT 955 consensus_10026#1 ACGTCTTAA-ACAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCG 583 * ** * ** *** ** * * *** *** * * * * consensus_10026#0 AAGAGAATCTAATCCGACAGATCCTCTTGGCCTT--GGTGATCTGGCTAGTTTAACTGTA 1013 consensus_10026#1 AAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTT 643 *** * ** ** * ** * *** **** * * * * * * consensus_10026#0 GCTAACGAGGCTGATTCAGGTTTAAATGGTGATGTTTGTGACTCAATTTACCTGGAAACA 1073 consensus_10026#1 -CTCTCACGACTG---CAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCA 699 ** * * *** *** * ** * * * * * * * * ** consensus_10026#0 TTATGAATCATCAGTGTTA--GGTGGCTCTGTCAGTAGTAATGCTCAAGTAGACAGTGCA 1131 consensus_10026#1 AAGTCGAAGCTCAATGATAATGCTGGCTATG---ATGCCAGCCTTCAA------------ 744 * * *** ** ** * ***** ** * * **** consensus_10026#0 GCAAATATTTCATCGACTTACTCAACTGGTCGTCGACCGTGGGTCCCGAGATATACACTT 1191 consensus_10026#1 ------------------------------------------------------------ consensus_10026#0 CGCGGTCACTTTGATGG 1208 consensus_10026#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||