These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1038 fasta sequence [TTACAAAGCTGTATACCTTAAAGATCTATGATTTTGAAGGAAGCACAAAAATATATTAAGAAAAAGTTTAATTACAAAAATGGAATATATGTAGATGTATACTTCAGTAGAAGGCATCGAATTAAAATCAGTAAGAAACAGACTCCTACGATAGCAAATGAAGTGAATGAAGAGAGAAAGCGGAACATTTTTATAAAATTAATTTTTCATTCAAAAAGTAAAACCACCATCACTTACAAACAGACGAAGACGAATAAATATGATATAGGCACAAAAAAATATATACTAAAACATATAACGTTAAGCATTAATCTGACCAATATTAAGTAATCTTTAAAATTAATTTAGATTAGTAGGTGCCAAAGGCTAACTGATTATACATAATGATTTCTTCATAGGATAAAATTAGGTGTATCGCTCAAATAGACAGTCAGTCAGCTACAACGTAGGACCAGGCACACATATGCATCGGTCCAAGTTGCCATACCTCATTAGCACAACAAGATAAACACCGAATTCATAGTAGTTCATTTAATGGTGGCAATATGTAAGAAAATGGTTTTATCTAAGGATATATAGTACAGGAAGAAAAACATGAAGCATAGTTTAAGGGAAGACTGAAAGTGTATACCCCTACGCCATTGTGGTCGATTTTGAGCCATTTCACACAGTCTCAAACCAAGTCAGGGCCATCTATTATCCTTATTTATTGATCTACAAGCTAAAGACTTTCGTCGCCAACTGTCAGGTTTAAACTTCGTGAAGGCGCTGGCAAGATGCAGTTTTATGAATACTTTGTACGACGCTTCAGGATTGTGGTTATCCATTTCCTAATAGTTGTAAGTAATCTACCAGAAGCTGTTTTGAACTTGATGGAACTGATTGTTTGTATCAATTAAGTGTCAGATTCTTAAAATTAATAACCAGGCATTTCGTTGAACAATACTAGTTACATACAGTGCTACCACCGACAGCTTCGTTACAATCGGCTTTATGCCAAAATATTCTTGNTTTGAAGTTATGGATCACTATTTAGTG] [+] EMBL CD118635 [TTACAAAGCTGTATACCTTAAAGATCTATGATTTTGAAGGAAGCACAAAAATATATTAAGAAAAAGTTTAATTACAAAAATGGAATATATGTAGATGTATACTTCAGTAGAAGGCATCGAATTAAAATCAGTAAGAAACAGACTCCTACGATAGCAAATGAAGTGAATGAAGAGAGAAAGCGGAACATTTTTATAAAATTAATTTTTCATTCAAAAAGTAAAACCACCATCACTTACAAACAGACGAAGACGAATAAATATGATATAGGCACAAAAAAATATATACTAAAACATATAACGTTAAGCATTAATCTGACCAATATTAAGTAATCTTTAAAATTAATTTAGATTAGTAGGTGCCAAAGGCTAACTGATTATACATAATGATTTCTTCATAGGATAAAATTAGGTGTATCGCTCAAATAGACAGTCAGTCAGCTACAACGTAGGACCAGGCACACATATGCATCGGTCCAAGT ] [+] EMBL CD118682 [TTACAAAGCTGTATACCTTAAAGATCTATGATTTTGAAGGAAGCACAAAAATATATTAAGAAAAAGTTTAATTACAAAAATGGAATATATGTAGATGTATACTTCAGTAGAAGGCATCGAATTAAAATCAGTAAGAAACAGACTCCTACGATAGCAAATGAAGTGAATGAAGAGAGAAAGCGGAACATTTTTATAAAATTAATTTTTCATTCAAAAAGT AAACCACCATCACTTACAAACAGACGAAGACGAATAAATATGATATAGGCACAAAAAAATATATACTAAAACATATAACGTTAAGCATTAATCTGACCAATATTAAGTAATCTTTAAAATTAATTTAGATTAGTAGGTGCCAAAGGCTAACTGATTATACATAATGATTTCTTCATAGGATAAAATTAGGTGTATCGCTCAAATAGACAGTCAGTCAGCTACAACGTAGGACCAGGCACACATATGCATCGGTCCAAGT ] [+] EMBL CD078308 [ AGTCAGTCAGCTACAACATAGGAACAGGCACACATATGCATCGGTCCAAGTTGCCATACCTCATTAGCACAACAAGATAAACACCGAATTCATAGTAGTTCATTTAATGGTGGCAATATGTAAGAAAATGGTTTTATCTAAGGATATATAGTACAGGAAGAAAAACATGAAGCATAGTTTAAGGGAAGACTGAAAGTGTATACCCCTACGCCATTGTGGTCGATTTTGAGCCATTTCACACAGTCTCAAACCAAGTCAGGGCCATCTATTATCCTTATTTATTGATCTACAAGCTAAAGACTTTCGTCGCCAACTGTCAGGTTTAAACTTCGTGAAGGCGCTGGCAAGATGCAGTTTTATGAATACTTTGTACGACGCTTCAGGATTGTGGTTATCCATTTCCTAATAGTTGTAAGTAATCTACCAGAAGCTGTTTTGAACTTGATGGAACTGATTGTTTGTATCAATTAAGTGTCAGATTCTTAAAATTAATAACCAGGCATTTCGTTGAACAATACTAGTTACATACAGTGCTACCACCGACAGCTTCGTTACAATCGGCTTTATGCCAAAATATTCTTGNTTTGAAGTTATGGATCACTATTTAGTG] [+] EMBL CD078396 [ AGTCAGTCAGCTACAACATAGGAACAGGCACACATATGCATCGGTCCAAGTTGCCATACCTCATTAGCACAACAAGATAAACACCGAATTCATAGTAGTTCATTTAATGGTGGCAATATGTAAGAAAATGGTTTTATCTAAGGATATATAGTACAGGAAGAAAAACATGAAGCATAGTTTAAGGGAAGACTGAAAGTGTATACCCCTACGCCATTGTGGTCGATTTTGAGCCATTTCACACAGTCTCAAACCAAGTCAGGGCCATCTATTATCCTTATTTATTGATCTACAAGCTAAAGACTTTCGTCGCCAACTGTCAGGTTTAAACTTC ] consensusID : consensus_10033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 864 fasta sequence [CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAAAAAGAGAATGAGGAGATTGAAGCGTAAACGAAGG-AAAATGAGGGAAAGGAGCAAGTGAAGTAATCGTTGTGAAGCTCTTG-TACCTTTGT-GGGAAATCAAATAAATTCTTTCCACAATGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCATTGGATGAGTGTTTATTAGCTAGACAACTACGATTTGATTATGACGTCTGTAGGAAAGTCACATCCTGTCATTTGTTCTGTAGGCTAGTGAACCGAACGACGTTGAATTTGTGGATGGAGATGTCGATTGGATTGAAGATGAGAATCAATCTGTAAACAACTCGGATGACGATTCGACCAACGAAGTTGAAGTGGTGGACAATGATATGGATGTTGTACAGTATTTTACACCTACTCAAGATGATACATTCAAATTACTCTCAGGCCATAAAGAAAGCGTCTTCTGTTTAGATTTTGATAGTACTGGTAAATTTCTTGCATCTGGTGGACAAGATCATATTGCTATAATATGGAATGTAGCAACTGGTGAAATTGAATTCATTTGTCAAGGTCATGATGATTCTGTGAATTGTGTTAGTTTCAGTCCAAATGGTGATTATTTATGTACTGGTGATATGGCTGGAAATATTCGTATATGGTTAAGACCATTAATAGAAGAAAATTCAAAAGAATGGAAATTATTAAGAACAGAAACTGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAAATGCTGTACGAAATATGAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATGAACATAGTTA] [+] EMBL CD124291 [CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAAAAAGAGAATGAGGAGATTGAAGCGTAAACGAAGG AAAATGAGGGAAAGGAGCAAGTGAAGTAATCGTTGTGAAGCTCTTG TACCTTTGT GGGAAATCAAATAAATTCTTTCCACAATGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCATTGGATGAGTGTTTATTAGCTAGACAACTACGATTTGATTATGACGTCTGTAGGAAAGTCACATCCTGTCATTTGTTCTGTAGGCTAGTGAACCGAACGACGTTGAATTTGTGGATGGAGATGTCGATTGGATTGAAGATGAGAATCAATCTGTAAACAACTCGGATGACGATTCGACCAACGAAGTTGAAGTGGTGGACAATGATATGGATGTTGTACAGTATTTTACACCTACTCAAGATGATACATTCAAATTACTCTCAGGCCATAAAGAAAGCGTCTTCTGTTTAGATTTTGATAGTACTGGTAAATTTCTTGCATCTGGTGGACAAGATCATATTGCTATAATATGGAATGTAGCAACTGGTGAAATTGAATTCATTTGTCAAGGTCATGATGATTCTGTGAATTGCGTTAGTTTCAGTCCANATGGTGATTATTTATGTACTG ] [+] EMBL CD124200 [CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAAAAAGAGAATGAGGAGATTGAAGCGTAAACGAAGG AAAATGAGGGAAAGGAGCAAGTGAAGTAATCGTTGTGAAGCTCTTG TACCTTTGT GGGAAATCAAATAAATTCTTTCCACAATGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCATTGGATGAGTGTTTATTAGCTAGACAACTACGATTTGATTATGACGTCTGTAGGAAAGTCACATCCTGTCATTTGTTCTGTAGGCTAGTGAACCGAACGACGTTGAATTTGTGGATGGAGATGTCGATTGGATTGAAGATGAGAATCAATCTGTAAACAACTCGGATGACGATTCGACCAACGAAGTTGAAGTGGTGGACAATGATATGGATGTTGTACAGTATTTTACACCTACTCAAGATGATACATTCAAATTACTCTCAGGCCATAAAGAAAGCGTCTTCTGTTTAGATTTTGATAGTACTGGTAAATTTCTTGCATCTGGTGGACAAGATCATATTGCTATAATATGGAATGTAGCAACTGGTGAATTTGAATTCATTTGTCAAGGTCATGATGATTCTGTGAATTGTGTTAGTTTCAGTCCCAATGGTGATTAT ] [+] EMBL CD124323 [CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAAAAAGAGAATGAGGAGATTGAAGCGTAAACGAAGG AAAATGAGGGAAAGGAGCAAGTGAAGTAATCGTTGTGAAGCTCTTG TACCTTTGT GGGAAATCAAATAAATTCTTTCCACAATGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCACTGGATGAGTGTTTATTAGCTAGACAACTACGATTTGATTATGACGTCTGTAGGAAAGTCACATCCTGTCATTTGTTCTGTAGGCTAGTGAACCGAACGACGTTGAATTTGTGGATGGAGATGTCGATTGGATTGAAGATGAGAATCAATCCGTAAACAACTCGGATGACGATTCGACCAACGAAGTTGAAGTGGTGGACAATGATATGGATGTTGTACAGTATTTTACACCTACTCAAGATGATACATTCAAATTACTCTCAGGCCATAAAGAAAGCGTCTTCTGTTTAGATTTTGATAGTACTGGTAAATTTCTTGCATCTGGTGGACAAGATCATATTGCTATAATATGGAATGTAGCAACTGGTGAAATTGAATTCATTTGTCAAGGTCATGGTG ] [+] EMBL CD124282 [CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAAAAAGAGAATGAGGAGATTGAAGCGTAAACGAAGG AAAATGAGGGAAAGGAGCAAGTGAAGTAATCGTTGTGAAGCTCTTG TACCTTTGT GGGAAATCAGATAAATTCTTTCCACAATGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCATTGGATGAGTGTTTATTAGCTAGACAACTACGATTTGATTATGACGTCTGTAGGAAAGTCACATCCTGTCATTTGTTCTGTAGGCTAGTGAACCGAACGACGTTGAATTTGTGGATGGGGATGTCGATTGGATTGAAGATGAGAATCAATCTGTAAACAACTCGGATGACGATTCGACCAACGAAGTTGAAGTGGTGGACAATGATATGGATGTTGTACAGTATTTTACACCTACTCAAGATGATACATTCAAATTACTCTCAGGCCATAAAGAAAGCGTCTTCTGTTTAGATTTTGATAGTACTGGTAAATTTCTTG ] [+] EMBL CD124330 [CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAAAAAGAGAATGAGGAGATTGAAGCGTAAACGAAGG AAAATGAGGGAAAGGAGCAAGTGAAGTAATCGTTGTGAAGCTCTTG TACCTTTGT GGGAAATCAAATAAATTCTTTCCACAATGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCATTGGATGAGTGTTTATTAGCTAGACAACTACGATTTGATTATGACGTCTGTAGGAAAGTCACATCCTGTCATTTGTTCTGTAGGCTAGTGAACCGAACGACGTTGAATTTGTGGATGGAGATGTCGATTGGATTGAAGATGAGAATCAATCTGTAAACAACTCGGATGACGATTCGACCAACGAAGTTGAAGTGGTGGACAATGATATGGATGTTGTACAGTATTTTACACCTACTCAAGATGATACATTCAAATTACTCTCAGGCCATAAAGAAAGCGTCTTCTGTTTAGATCTTGATA ] [+] EMBL AA559353 [ GAATGAGGAGATTGAAGCGTAAACGAAGGNAAAATGAGGGAAAGGAGCAANTGAAGTAATCGTTGTGAAGCTCTTGNTACCTTTGTGGGGAAATCAAATAAATNCT ] [+] EMBL CD147744 [ TGCTATAATATGGAATGTAGCAACTGGTGAAATTGAATTCATTTGTCAAGGTCATGATGATTCTGTGAATTGTGTTAGTTTCAGTCCAAATGGTGATTATTTATGTACTGGTGATATGGCTGGAAATATTCGTATATGGTTAAGACCATTAATAGAAGAAAATTCAAAAGAATGGAAATTATTAAGAACAGAAACTGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAAATGCTGTACGAAATATGAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATGAACATAGTTA] consensusID : consensus_10033#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 349 fasta sequence [CCTTGGACTAAGATCTACGTCCATCGCGGTGGCTGTCGATCTAGAACTTCTGGATCCGCCCGGGGAGTACGAATATCGAATGGATGGGGAGTCTCTTAACCATTACTTCGGATCCGAAAACCAACAAAATAGAACCGAAGTCCTATTTCATTATGCCATGCAAGAATTTTCAGGCACATAAGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAAGATGCCGTCCGCTCCCGACACCCGTTTAAAGGCATCCGGAAGCATGCCGACAGGTCAACAAGACGAACTCGTCAACCCACCAGCACCCGTTTAACACAGACACAGCTCCACCATGCGGGCTGGATCCAGCCCG] [+] EMBL BG932125 [CCTTGGACTAAGATCTACGTCCATCGCGGTGGCTGTCGATCTAGAACTTCTGGATCCGCCCGGGGAGTACGAATATCGAATGGATGGGGAGTCTCTTAACCATTACTTCGGATCCGAAAACCAACAAAATAGAACCGAAGTCCTATTTCATTATGCCATGCAAGAATTTTCAGGCACATAAGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAAGATGCCGTCCGCTCCCGACACCCGTTTAAAGGCATCCGGAAGCATGCCGACAGGTCAACAAGACGAACTCGTCAACCCACCAGCACCCGTTTAACACAGACACA ] [-] EMBL CD072623 [ GCCGACAGGTCAACAAGACGAACTCGTCAACNCACCAGCACCCGCTTAACACAGACACGGCTCCACCATGCGGGCTGGATCCAGCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10033#0 TTACAAAGCTGTATACCTTAAAGATCTATGATTTTGAAGGAAGCACAAAAATATATTAAG 60 consensus_10033#2 ------------------------------------------------------------ consensus_10033#1 ---CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAA 57 consensus_10033#0 AAAAAGTTTAATTACAAAAATGGAATATATGTAGATGTATACTTCAGTAGAAGGCAT-CG 119 consensus_10033#2 ------------------------------------------------------------ consensus_10033#1 AAAGAG---AATGAGGAGATTGAAGCGTAAACGAAGGAAAATGAGGGAAAGGAGCAAGTG 114 consensus_10033#0 AATTAAAATCAGTAAGAAACAGACTCCTACGATAGCAAATGAAGTGAATGAAGAGAGAAA 179 consensus_10033#2 ------------------------------------------------------------ consensus_10033#1 AAGTAATCGTTGTGAAGCTCTTGTACCTTTG-TGGGAAATCAAATAAATTCTTTCCACAA 173 consensus_10033#0 GCGGAACATTTTTATAAAATTAATTTTTCATTCAAAAAGTAAAACCACCATCACTTACAA 239 consensus_10033#2 ------------------------------------------------------------ consensus_10033#1 TGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCATTGGATGAGTGTTTATTA 233 consensus_10033#0 AC-AGACGAAGACGAATAAAT-ATGATATAGGCACAAAAAAATATATACTAAAACATATA 297 consensus_10033#2 ------------------------------------------------------------ consensus_10033#1 GCTAGACAACTACGATTTGATTATGACGTCTGTA-GGAAAGTCACATCCTGTCATTTGTT 292 consensus_10033#0 ACGTTAAGCATTAATCTGACCAATATTAAGTAATCTTTAAAATTAATTTAGATTAGTAGG 357 consensus_10033#2 ------------------------------------------------------------ consensus_10033#1 CTGTAGGCTAGTGAACCGAACGACGTTGAAT--TTGTGGATGGAGATGTCGATTGGATTG 350 consensus_10033#0 TGCCAAAGGCTAACTGATTATACATAATGATTTCTTCATAGGATAAAATTAGGTGTATCG 417 consensus_10033#2 ------------------------------------------------------------ consensus_10033#1 ------AAGATGAGAATCAATCTGTAAACAACTCGGATGACGATTCGACCAACGAAGTTG 404 consensus_10033#0 CTCAAATAGACAGTCAGTCAGCTACAACGTAGGACCAGGCACACATATGCATCGGTCCAA 477 consensus_10033#2 ---------------------------CCTTGGACTAAG-----ATCTACGTCCATCGCG 28 consensus_10033#1 AAGTGGTGGACAATGATATGGATGTTGTACAGTAT----------TTTACACCTACTCAA 454 * * * * * * consensus_10033#0 GTTGCCATACCTCATTAGCACAACAAGATAAACACCGAATTCATAGTAGTTCATTTAATG 537 consensus_10033#2 GTGGCTGTCGATC--TAGAACTTCTGGATCCGCCCGGGGAGTACGAATATCGAATGGATG 86 consensus_10033#1 GATG--ATACATTCAAATTACTCTCAGGC---CATAAAGAAAGCGTCTTCTGTTTAGATT 509 * * * * * ** * * * ** consensus_10033#0 GTGGCAATATGTAAGAAAATGGTTTTATCTAAGGATATATAGTACAGGAAGAAAAACATG 597 consensus_10033#2 --GGGAGTCTCTTAACCATTACTTC-------GGATCCGAAAACCAACAAAATAGAACCG 137 consensus_10033#1 TTGATAGTAC--TGGTAAATTTCTT-------GCATCTGGTGGACAAGATCATATTGCTA 560 * * * * * * * ** ** * * * consensus_10033#0 AAGCATAGTTTA-AGGGAAGACTGAAAGTGTATACCCCTACGCCATTGTGGTCGATTTTG 656 consensus_10033#2 AAGTCCTATTTC-ATTATGCCATGCAAGAATTTTCAGGCACATAA-----GCCTGCTTTG 191 consensus_10033#1 TAATATGGAATGTAGCAACTGGTGAAATTGAATTCATTTGTCAAGGTCATGATGATTCTG 620 * * * ** ** * * * * ** consensus_10033#0 AGCCATTTCACACAGTCTCAAACCAAGTCAGGGCCATCTATTATCCTTATTTATTGATCT 716 consensus_10033#2 AGCA--CTCAAATTTGTTCAAAGTAAA--GATGCCGTCCGCTCCCGACACCCGTTTAAAG 247 consensus_10033#1 TGAA--TTGTGTTAGTTTCAGTCCAAATGGTGATTATTTATGTAC--TGGTGATATGGCT 676 * * *** ** * * * consensus_10033#0 ACAAGCTAAAGACTTTCGTCGCCAACTGTCAGGTTTAAACTTCGTGAAGGCGCTGGCAAG 776 consensus_10033#2 GCATCCGGAAGCATGCCGACA--GGTCAACAAGACGAA--CTCGTCAACCCACCAGCA-- 301 consensus_10033#1 GGAAATATTCGTATATGGTTAA-GACCATTAA-TAGAAGAAAATTCAAAAGAATGGAAAT 734 * * * * * ** * ** * * consensus_10033#0 ATGCAGTTTTATGAATACTTTGTACGACGCTTCAGGATTGTGGTTATCCATTTCCT--AA 834 consensus_10033#2 --CCCGTTTAACACAGACACAGCTCCACCATGCGGGCTGGATCCAGCCCG---------- 349 consensus_10033#1 TATTAAGAACAGAAACTGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAA 794 * * * * * consensus_10033#0 TAGTTGTAAGTAATCTACCAGAAGCTGTTTTGAACTTGATGGAACTGATTGTTTGTATCA 894 consensus_10033#2 ------------------------------------------------------------ consensus_10033#1 ATGCTGTACGAAATATGAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATG 854 consensus_10033#0 ATTAAGTGTCAGATTCTTAAAATTAATAACCAGGCATTTCGTTGAACAATACTAGTTACA 954 consensus_10033#2 ------------------------------------------------------------ consensus_10033#1 AACATAGTTA-------------------------------------------------- 864 consensus_10033#0 TACAGTGCTACCACCGACAGCTTCGTTACAATCGGCTTTATGCCAAAATATTCTTGNTTT 1014 consensus_10033#2 ------------------------------------------------------------ consensus_10033#1 ------------------------------------------------------------ consensus_10033#0 GAAGTTATGGATCACTATTTAGTG 1038 consensus_10033#2 ------------------------ consensus_10033#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||