These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1064 fasta sequence [GACTGCGCTATATGACGTTTTTAAAATGACTAGAATGTTTTGTGCTCGACTCTGCACTCTTCAGAAATGGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAATCGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCATTTGCGGCTGGTCTTAGAGATGGTGATTACGTAGTAGAAGTAAATGGCGTTAATATCGTACCTAACCAACATCAAGAGGTAGTACAATGTATTTTGAAAAATCCATCAAAAGTCTCCCTTCTTGTACTGGATCCAGAATCAAGAGCTTATTTCGAAAATAATTCAATTAA--TGTCAATAAATTTATGGTAGATATTGAGAAAGTCGATTGTCCAGTAGTTAATCCATTTTCATCTGGTCAAAAGGTGAATGGACATAATGAACCGATTTCAGATGATGGTTTATTATCAAGTGAATCAGAGAAAATCAAACTTGAAACCATTGACGAAATGACTATTCAATCATCTAGTTATCCATCATCTATGGTTTCATTATCACAA-AACAATAATTCAGTGACAAGTATTAGTAATAGTTCACCAGCATATGGTAATAAATCAAAAAATGATAAGATAAATGGTGCTTTATCCACTCAAAATAGTTTTATTTCTATTGAATCTCAGAAGTCTATTCCACGGAATAATAATCATCGATCAATTTTAAATGATATCAATTTAGATGTAATTAGTAATAAATCCCCAGTAAATGGAGGACGTCGACGAAATCAACAAAAAGATTTTTTAAGTTTTAATGCACGTGCAAAAATAGTAAATGAATTATAATAAACTGAAGTTTGTTTTCAATAAAAGAAAAGAGATTGTTTATTTGACAAGATCAAATTATCAATGTGTGGATAATACAAGCTGCTGATCGAACTCATATTTGGGCAAAGTTTACAAGAGAATTCTTTTTTTTTTATAATATTTATTACCATCCTATTATTTGTTTTATTTTTCTTATCGTTATTTTCTTCTATCATTACTTTAGTCACATTATTATTGATTTCATTATTTTGTATAATAAAAGTCT] [+] EMBL CD082227 [GACTGCGCTATATGACGTTTTTAAAATGACTAGAATGTTTTGTGCTCGACTCCGCACTCTTCAGAAATGGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAATCGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCATTTGCGGCTGGTCTTAGAGATGGTGATTACGTAGTAGAAGTAAATGGCGTTAATATCGTACCTAACCAACATCAAGAGGTAGTACAATGTATTTTGAAAAATCCATCAAAAGTCTCCCTTCTTGTACTGGATCCAGAATCAAGAGCTTATTTCGAAAATAATTCAATTAA TGTCAATAAATTTATGGTAGATATTGAGAAAGTCGATTGTCCAGTAGTTAATCCATTTTCATCTGGTCAAAAGGTGAATGGACATAATGAACCGATTTCAGATGATGGTTTATTATCAAGTGAATCAGAGAAAATCAAACTTGAAACCATTGACGAAATGACTATTCAATCATCTAGTTATCCATCATCTATGGTTTCATTATCACAA AACAATAATTCAGTGACAAGTATTAGTAATAGTTCACCAGCATATGGTAATAAATCAAAAAATGATAAGATAAATGGTGCTTTATCCACTCAAAATAGTTNTATTTC ] [+] EMBL CD079868 [ TGACGTTTTTAAAATGACTAGAAAGTATTGTGCTCGACTCTGCACTCTTCAGAAATGGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAATCGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCATTTGCGGCTGGTCTTAGAGATGGTGATTACGTAGTAGAAGTAAATGGCGTTAATATCGTACCTAACCAACATCAAGAGGTAGTACAATGTATTTTGAAAAATCCATCAAAAGTCTCCCTTCTTGTACTGGATCCAGAATCAAGAGCTTATTTCGAAAATAATTCAATTAA TGTCAATAAATTTATGGTAGATATTGAGAAAGTCGATTGTCCAGTAGTTAATCCATTTTCATCTGGTCAAAAGGTGAATGGACATAATGAACCGATTTCAGATGATGGTTTATTATCAAGTGAATCAGAGAAAATCAAACTTGAAACCATTGACGAAATGACTATTCAATCATCTAGTTATCCATCATCTATGGTTTCATTATCACAA AACAATAATTCAGTGACAAGTATTAGTAATAGTTCACCAGCATATGGTAATAAATCAAAAAATGATAAGATAAATGGTGCTTTATCCACTCAAAATAGTTTTATTTCTATTGAATCTCAGAAGTCTATTCCACGGAATAAATATCATCGATCAATTNTA ] [+] EMBL CD077676 [ GCTCGACTCTGCACTCTTCAGAAATGGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAATCGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCATTTGCGGCTGGTCTTAGAGATGGTGATTACGTAGTAGAAGTAAATGGTGTTAATATCGTACCTAACCAACATCAAGAGGTAGTACAATGTATTTTGAAAAATCCATCANAAGTCTCCCTTCTTGTACTGGATCCAGAATCAAGAGCTTATTTCGAAAAT ATTC ATTAANNTGTC ATAA TTATG ] [+] EMBL CD082980 [ TTCAGAAATGGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAATCGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCATTTGCGGCTGGTCTTAGAGATGGTGATTACGTAGTAGAAGTAAATGGCGTTAATATCGTACCTAACCAACATCAAGAGGTAGTACAATGTATTTTGAAAAATCCATCAAAAGTCTCCCTTCTTGTACTGGATCCAGAATCAAGAGCTTATTTCGAAAATAATTCAATTAA TGTCAATAAATTTATGGTAGATATTGAGAAAGTCGATTGTCCAGTAGTTAATCCATTTTCATCTGGTCAAAAGGTGAATGGACATAATGAACCGATTTCAGATGATGGTTTATTATCAAGTGAATCAGAGAAAATCAAACTTGAAACCATTGACGAAATGACTATTCAATCATCTAGTTATCCATCATCTATGGTTTCATTATCACAA AACAATAATTCAGTGACAAGTATTAGTAATAGTTCACCAGCATATGGTAATAAATCAAAAAATGATAAGATAAATGGTGCTTTATCCACTCANAATAGTTNTATTTCTATTGAATCTC ] [+] EMBL CD083914 [ gTTCAGAAATGGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAATCGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCATTTGCGGCTGGTCTTAGAGATAGTGATTACGTAGTAGAAGTAAATGGCGTTAATATCGTACCTAACCAACATCAAGAGGTAGTACAATGTATTTTGAAAAATCCATCAAAAGTCTCCCTTCTTGTACTGGATCCAGAATCAAGAGCTTATTTCGAAAATAATTCAATTAA TGTCAATAAATTTATGGTAGATATTGAGAAAGTCGATTGTCCAGTAGTTAATCCATTTTCATCTGGTCAAAAGGTGAATGGACATAATGAACCGATTTCAGATGATGGTTTATTATCAAGTGAATCAGAGAAAATCAAACTTGAAACCATTGACGAAATGACTATT ] [+] EMBL CD080056 [ GGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAATCGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCATTTGCGGCTGGTCTTAGAGATGGTGATTACGTAGTAGAAGTAAATGGCGTTAATATCGTACCTAACCAACATCAAGAGGTAGTACAATGTATTTTGAAAAATCCATCAAAAGTCTCCCTTCTTGTACTGGATCCAGAATCAAGAGCTTATTTCGAAAATAATTCAATTAA TGTCAATAAATTATTGGTAGATATTGAGAAAGTCGATTGTCCAGTAGTTAATCCATTTTCATCTGGTCAAAAGGTGAATGGACATAATGAACCGATTTCAGATGATGGTTTATTATCAAGTGAATCAGAGAAAATCAAACTTGAAACCATTGACGAAATGACTATTCAATCATCTAGTTATCCATCATCTATGGTTTCATTATCACAANNACAAT ATTCAGT ] [-] EMBL CD074868 [ TATTCAATCATCTAGTTATCCATCATCTATGGTTTCATTATCACAA AACAATAATTCAGTGGCAAGTATTAGTAATAGTTCCCCAGCATATGGTAATAAATCAAAAAATGATAAGATAAATGGTGCTTTATCCACTCAAAATAGTTTTATTTTTATTGAATTTCAGAAGTTTATTCCCCGGAATAATAATCATCGATCAATTTTAAATGATATCAATTTAGATGTAATTAGTAATAAATCCCCAGTAAATGGAGGACGTCGACGAAATCAACAAAAAGATTTTTTAAGTTTTAATGCACGTGCAAAAATAGTAAATGAATTATAATAAACTGAAGTTTGTTTTCAATAAAAAAAAAAAGATTGTTTATTTGACAAGATCAAATTATCAATGTGTGGATAATACAAGCTGCTGATCGAACTCATATTTGGGCAAAGTTTACAAAAGAATTCTTTTTTTTTTATAATATTTATTACC ] [-] EMBL CD075838 [ CAA AACAATAATTCAGTGACAAGTATTAGTAATAGTTCACCAGCATATGGTAATAAATCAAAAAATGATAAGATAAATGGTGCTTTATCCACTCAAAATAGTTTTATTTCTATTGAATCTCAGAAGTCTATTCCACGGAATAATAATCATCGATCAATTTTAAATGATATCAATTTAGATGTAATTAGTAATAAATCCCCAGTAAATGGAGGACGTCGACGAAATCAACAAAAAGATTTTTTAAGTTTTAATGCACGTGCAAAAATAGTAAATGAATTATAATAAACTGAAGTTTGTTTTCAATAAAAGAAAAGAGATTGTTTATTTGACAAGATCAAATTATCAATGTGTGGATAATACAAGCTGCTGATCGAACTCATATTTGGGCAAAGTTTACAAGAGAATTCTTTTTTTTTTATAATATTTATTACCATCCTATTATTTGTTTTATTTTTCTTATCGTTATTTTCTTCTATCATTACTTTAGTCACATTATTATTGATTTCATTATTTTGTATAATAAAAGTCT] [-] EMBL CD076563 [ TTCAGTGACAAGTATTAGTAATAGTTCACCAGCATATGGTAATAAATCAAAAAATGATAAGATAAATGGTGCTTTATCCACTCAAAATAGTTTTATTTCTATTGAATCTCAGAAGTCTATTCCACGGAATAATAATCATCGATCAATTTTAAATGATATCAATTTAGATGTAATTAGTAATAAATCCCCAGTAAATGGAGGACGTCGACGAAATCAACAAAAAGATTTTTTAAGTTTTAATGCACGTGCAAAAATAGTAAATGAATTATAATAAACTGAAGTTTGTTTTCAATAAAAGAAAAGAGATTGTTTATTTGACAAGATCAAATTATCAATGTGTGGATAATACAAGCTGCTGATCGAACTCATATTTGGGCAAAGTTTACAAGAGAATTCTTTTTTTTTTATAATATTTATTACCATCCTATTATTTGTTTTATTTTTCTTATCGTTATTTTCTTCTATCATTACTTTAGTCACATTATTATTGATTTCATTATTTTGTATAATAAAAGTCT] [+] EMBL SMAA14126 [ TAGTTCACCAGCATATGGTAATAAATCAAAAAATGATAAGATAAATGGTGCTTTATCCACTCAAAATAGTTTTATTTCTATTGAATCTCAGAAGTCTATTCCACGGAATAATAATCATCGATCAATTTTAAATGATATCAATTTAGATGTAATTAGTAATAAATCCACAGTAAATGGAGGACGTCGACGAAATCAACAAAAAGATTTTCTAAGTTTTAATGCACGTGC AAAATAGTAAATGAATTATAATAAACTGAAGTTTG TTTCAATAAAAGA ] consensusID : consensus_10038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 607 fasta sequence [GACGTTTTTAAAATGACTAGAAAGTATTGTGCTCGACTCTGCACTCTTCAGAAATGGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAATCGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCATTTGCGGCTGGTCTTAGAGATGGTGATTACGTAGTAGAAGTAAATGGCGTTAATATCGTACCTAACCAACATCAAGAGGTAGTACAATGTATTTTGAAAAATCCATCAAAAGTCTCCCTTCTTGTACTGGATCNNNNNNNNNNNNNNNNATTTCGAAAATAATTCAATTAATGTCAATAAATTTATGGTAGATATTGAGAAAGTCGATTGTCCAGTAGTTAATCCATTTTCATCTGGTCAAAAGGTGAATGGACATAATGAACCGATTTCAGATGATGGTAAACTTGAAACCATTGACGAAATGACTATTCAATCATCTAGTTATCCATCATCTATGGTTTCATTATCACAAAACAATAATTCAGTGACAAGTATTAGTAATAGTTCACCAGCATATGGTAATAAATCAAAAAATGATAAGATAAATGGTGCTTTATCCACTCNNNNNNNNNNNNNNNNN] [+] EMBL CD081040 [GACGTTTTTAAAATGACTAGAAAGTATTGTGCTCGACTCTGCACTCTTCAGAAATGGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAATCGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCATTTGCGGCTGGTCTTAGAGATGGTGATTACGTAGTAGAAGTAAATGGCGTTAATATCGTACCTAACCAACATCAAGAGGTAGTACAATGTATTTTGAAAAATCCATCAAAAGTCTCCCTTCTTGTACTGGATCNNNNNNNNNNNNNNNNATTTCGAAAATAATTCAATTAATGTCAATAAATTTATGGTAGATATTGAGAAAGTCGATTGTCCAGTAGTTAATCCATTTTCATCTGGTCAAAAGGTGAATGGACATAATGAACCGATTTCAGATGATGGTAAACTTGAAACCATTGACGAAATGACTATTCAATCATCTAGTTATCCATCATCTATGGTTTCATTATCACAAAACAATAATTCAGTGACAAGTATTAGTAATAGTTCACCAGCATATGGTAATAAATCAAAAAATGATAAGATAAATGGTGCTTTATCCACTCNNNNNNNNNNNNNNNNN] [+] EMBL CD188358 [ ACGTTTTTAAAATGACTAGAAAGTATTGTGCTCGACTCTGCACTCTTCAGAAATGGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAATCGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCATTTGCGGCTGGTCTTAGAGATGGTGATTACGTAGTAGAAGTAAATGGCGTTAATATCGTACCTAACCAACATCAAGAGGTAGTACAATGTATTTTGAAAAATCCATCAAAAGTCTCCCTTCTTGTACT ] [-] EMBL CD190268 [ CGTTTTTAAAATGACTAGAAAGTATTGTGCTCGACTCTGCACTCTTCAGAAATGGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAATCGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCACTTGCGGCTGGTCTTAGAGATGGTGATTACGTAGTAGAAGTAAATGGCGTTAATATCGTACCTAACCAACATCAAGAGGTAGTACAATGTATTTTGAAAAATCCATCAAAAGTCTCCCTTCTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10038#0 GACTGCGCTATATGACGTTTTTAAAATGACTAGAATGTTTTGTGCTCGACTCTGCACTCT 60 consensus_10038#1 -------------GACGTTTTTAAAATGACTAGAAAGTATTGTGCTCGACTCTGCACTCT 47 ********************** ** ********************* consensus_10038#0 TCAGAAATGGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAAT 120 consensus_10038#1 TCAGAAATGGGAAAAGTATTCGGGTTACGGATTTAGCCTACAGGCAACAAAGGGAAAAAT 107 ************************************************************ consensus_10038#0 CGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCATTTGCGGCTGGTCTTAGAGA 180 consensus_10038#1 CGGGCACTATATAAGCGAGGTCGATCCACAGTCTCCTGCATTTGCGGCTGGTCTTAGAGA 167 ************************************************************ consensus_10038#0 TGGTGATTACGTAGTAGAAGTAAATGGCGTTAATATCGTACCTAACCAACATCAAGAGGT 240 consensus_10038#1 TGGTGATTACGTAGTAGAAGTAAATGGCGTTAATATCGTACCTAACCAACATCAAGAGGT 227 ************************************************************ consensus_10038#0 AGTACAATGTATTTTGAAAAATCCATCAAAAGTCTCCCTTCTTGTACTGGATCCAGAATC 300 consensus_10038#1 AGTACAATGTATTTTGAAAAATCCATCAAAAGTCTCCCTTCTTGTACTGGATCNNNNNNN 287 ***************************************************** consensus_10038#0 AAGAGCTTA-TTTCGAAAATAATTCAATTAATGTCAATAAATTTATGGTAGATATTGAGA 359 consensus_10038#1 NNNNNNNNNATTTCGAAAATAATTCAATTAATGTCAATAAATTTATGGTAGATATTGAGA 347 ************************************************** consensus_10038#0 AAGTCGATTGTCCAGTAGTTAATCCATTTTCATCTGGTCAAAAGGTGAATGGACATAATG 419 consensus_10038#1 AAGTCGATTGTCCAGTAGTTAATCCATTTTCATCTGGTCAAAAGGTGAATGGACATAATG 407 ************************************************************ consensus_10038#0 AACCGATTTCAGATGATGGTTTATTATCAAGTGAATCAGAGAAAATCAAACTTGAAACCA 479 consensus_10038#1 AACCGATTTCAGATGATGGT---------------------------AAACTTGAAACCA 440 ******************** ************* consensus_10038#0 TTGACGAAATGACTATTCAATCATCTAGTTATCCATCATCTATGGTTTCATTATCACAAA 539 consensus_10038#1 TTGACGAAATGACTATTCAATCATCTAGTTATCCATCATCTATGGTTTCATTATCACAAA 500 ************************************************************ consensus_10038#0 ACAATAATTCAGTGACAAGTATTAGTAATAGTTCACCAGCATATGGTAATAAATCAAAAA 599 consensus_10038#1 ACAATAATTCAGTGACAAGTATTAGTAATAGTTCACCAGCATATGGTAATAAATCAAAAA 560 ************************************************************ consensus_10038#0 ATGATAAGATAAATGGTGCTTTATCCACTCAAAATAGTTTTATTTCTATTGAATCTCAGA 659 consensus_10038#1 ATGATAAGATAAATGGTGCTTTATCCACTCNNNNNNNNNNNNNNNNN------------- 607 ****************************** consensus_10038#0 AGTCTATTCCACGGAATAATAATCATCGATCAATTTTAAATGATATCAATTTAGATGTAA 719 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 TTAGTAATAAATCCCCAGTAAATGGAGGACGTCGACGAAATCAACAAAAAGATTTTTTAA 779 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 GTTTTAATGCACGTGCAAAAATAGTAAATGAATTATAATAAACTGAAGTTTGTTTTCAAT 839 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 AAAAGAAAAGAGATTGTTTATTTGACAAGATCAAATTATCAATGTGTGGATAATACAAGC 899 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 TGCTGATCGAACTCATATTTGGGCAAAGTTTACAAGAGAATTCTTTTTTTTTTATAATAT 959 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 TTATTACCATCCTATTATTTGTTTTATTTTTCTTATCGTTATTTTCTTCTATCATTACTT 1019 consensus_10038#1 ------------------------------------------------------------ consensus_10038#0 TAGTCACATTATTATTGATTTCATTATTTTGTATAATAAAAGTCT 1064 consensus_10038#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||