These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 645 fasta sequence [AGCCANAATTTTGCACGAGGCACCAATCCGAATTCGGTAGGGAGTTGCGTGTTTTTGGTCCTTACTGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC-GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGAAACCAGCGC--G-GCTGCGGATAAAAACCACTCTAAACATTAGCAATGTTATAAGACCATATTTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAATGTGTATACTGCTTGCTGACTTCACAAATCGTCCTAAAATAC-AAGTCGGTTTTTTCTATGAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD080795 [AGCCANAATTTTGCACGAGGCACCAATCCGAATTCGGTAGGGAGTTGCGTGTTTTTGGTCCTTACTGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGAAACCAGCGC G GCTGCGGATAAAAACCACTCTAAACATTAGCAATGTTATAAGACCATATTTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAATGTGTATACTGCTTGCTGACTTCACAAATCGTCCTAAAATACAAAGTCGGT ] [+] EMBL AI975769 [ GAATTCGGTAGGGAGTTGCGTGTTTTTGGTCCTTACTGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTA ] [+] EMBL CD165348 [ GAATTCGGTAGGGAGTTGCGTGTTTTTGGTCCTTACTGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGA ] [+] EMBL CD185404 [ GGTCCTTACTGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGAAACCAGCGC G GCTGCGGATAAAAACCACTCTAAACATTAGCAATGTTATAAGACCATATCTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAATGTGTATACTGCTTGCTGACTTCACAAATCGTCCTAAAATAC AAGTCGGT ] [+] EMBL CD131578 [ TGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCCTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGAAACCAGCGC G GCTGCGGATAAAAACCACTCTAAACATTAGCAATGTTATAAGACCATATTTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAATGTGTATACTGCTTGCTGACTTC ] [-] EMBL AI395054 [ tCCCAAACAAGGGCTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGAAACCAGCGC G GCTGCGGATAAAAACCACTCTAAACATTAGCAATGTTATAAGACCATATTTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAATGTGTATACTGCTTGCTGACTTCACAAATCGTCCTAAAATAC AAGTCGGTTTTTTCTATGAAAAAAAAAAAAAAAAAAAA] [-] EMBL AI740283 [ TACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGCGGAAAGTCGCTGTCTTCGTGTTTGGGCGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGGACTTATGGAGAAATTAGAAACCAGCGC G GCTGCGGATAAAAACCACTCTAAACATTAGCAATGTTATAAGACCATATTTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAATGTGTATACTGCTTGCTGACTTCACAAATCGTCCTAAAATAC AAGTCGGTT ] [+] EMBL CD146399 [ GGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTT ] [+] EMBL CD146398 [ GGGCGAACTTGATATACTTCTCATTAGCGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTT ] [-] EMBL CD072455 [ ACAGCAAGGATGTTATATGCGACATCGC GAAAGTCGCTGTCTTCGTGTTTGAACGGGTTAAAAGCTGATATAGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGAAACCGTCTCCGGCGCTGCGGgctgtg ] [+] EMBL CD112703 [ ATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGA ] consensusID : consensus_10060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 249 fasta sequence [TGCGCATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGGTTGTTTTCAATTTAATTTAATTTATCCGCTTAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTA] [+] EMBL CD185526 [TGCGCATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGGTTGTTTTCAATTTAATTTAATTTATCCGCTTAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTA] [-] EMBL CD185297 [ GCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGGTTGTTTTCAATTTAATTTAATTTATCCGCTTAGATGAAACTATGTCACAATTTAAAGATGAAGTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10060#0 AGCCANAATTTTGCACGAGGCACCAATCCGAATTCGGTAGGGAGTTGCGTGTTTTTGGTC 60 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 CTTACTGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGC 120 consensus_10060#1 -----TGCGCATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGC 55 **** ************************************************** consensus_10060#0 CACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGA 180 consensus_10060#1 CACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGA 115 ************************************************************ consensus_10060#0 TAATGAAATAAGTGTAATCAAAATTGCCCCCAGAG------------------------- 215 consensus_10060#1 TAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGGTTGTTTTCAATTTAATTTAATTTA 175 *********************************** consensus_10060#0 ---------ATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGG 266 consensus_10060#1 TCCGCTTAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGG 235 *************************************************** consensus_10060#0 GTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACT 326 consensus_10060#1 GTTGTTATGGTGTA---------------------------------------------- 249 ************** consensus_10060#0 TCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGCGAA 386 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 AGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATG 446 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 AACTTATGGAGAAATTAGAAACCAGCGCGGCTGCGGATAAAAACCACTCTAAACATTAGC 506 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 AATGTTATAAGACCATATTTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAAT 566 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 GTGTATACTGCTTGCTGACTTCACAAATCGTCCTAAAATACAAGTCGGTTTTTTCTATGA 626 consensus_10060#1 ------------------------------------------------------------ consensus_10060#0 AAAAAAAAAAAAAAAAAAA 645 consensus_10060#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||