These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10061#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1992 fasta sequence [GTCCGTTGTTCAGAAGAGTTTGGATGAGTAGGAGGAACAAATGATTTTAAGTGTACATTTGTAGTAATGCTATTATTATTATTATTAATATTGTTTTCATTATCATTGCAACAGACATTGGGATTTTCTATTTGGCTTGGACTACCAACATTAACTGTTGTCCCCGTCCCGACTTTTGTTGTATCGATTGAACTTTTAAGATTATTTTCATTATTAGTTCGATTGTGCTGCTGCTGTTGTTGTTGTTTACTCGAAGCATCATTATTTACACCATTAGTGTTCCCAGTTAATTCGTCAGATTTTGATTCCAGGTTTGGATGACTACCACCACCACCACCACCACCACCGGGACCACCAATAACTGATCCACATTTTTCTGATGAATTATTAGATCCGATAGCTCGACCTTTTCGCTGCCAATCAGCAGGAATTTCTCGAGAATTCGATGATGGTTTACAGTTTTTCTTATCGGAACCTTGCAAATCACCCACATTGGGGGTCGATTTCTTGTTGGATGAACCATGCTTATGATGATCTGGCAACCGATTGTTATATGCTGATAAATTTGTTCCATCTGTTACTGATGTAGGAGGATTAGGTTCGGGATCAGGATCAAAGATATGTGGAGGCATACGAACTCTGTTCGAAAGTACTCCATGTGGACCGATAGAACGAAGTTCGTCAAAACATGGTTCGGAAAGAGCTTGAGATGGCAAAATTCTCAATGATGGATTATAAACAAGCATTTTACTCATTAGAGCCAACAAATCGGCTGGAGTATGTTGTGGGAAAAACAGTTTTACAGGGCAAGATTGAACGTCCGGGAAGCTGTAAGATCCATACATTGGATTCATACTGGCAATATCTTGTGGAGTAGGAGTGCCTAAAACGCGGATAACTTTAACCAGTTGATCTACTGAATCAGCTCCCATGAACAAACAATGCTGACGTAACATTTCAGCAAGTACACACCCCCCACTCCAAGTATCGATCGCACAAGAATAGTAATGAGCTCCAAATAATAACTCCGGAGCACGATAATACCGAGAGGATATATAAGATACATTAGCAGTTCCCGGCACCATTTCTTTAGCACTTCCAAAGTCACACACTTTTAAAACCATAGTATCTTCATTGACTAGTAAATTGGACGACTTGATATCACGGTGACATATTTGATGGCTATGTAAATAAGCTAAGGATTTGAGCATCTGATACGTAAAAACCTTCACAGTACAAGCTGGTATTTTCAGGTTCCTTTGGGAATAGCGGTAGATGAGTTCACATAAGCTCTCAGGGAAGCATTCCAGCACAAGATGCAAGAACACATCCACTCCCGACGTAGATGCGCCTGCACGTCCACCACCACTCCTATGGCCCCGACTATTAGACGACGCTGTCGAGTAATAGTAGTAGTAGAACTTTACAACATTAGGATGGTTGTTAAGGCGTTGCATAATACTCAGCTCACGGTTTTTGTAGCGAGGGTCCTGCAAGACACGCTTTACGGCGACCTGCAAACCTTGTCCTCCATCAGAGAAAGTACCGACATCGGAATTCTTTTTACCTGGTGTGCCTGAAGATGTTGCTGGTACGGCGAGAGTAGCTCTTTCAATCTGTCCAAATGTCCCTTGTCCAATAGTTCCAACAAAGCTCAAATGTATAGGAATATGCTGATTATCCTGTGCACCGCGAGCCTGAACCATCATTTGACGAGGAACAGATAATCCACTGTTTAATAAACTCATCAAGGCCCCACTGGAACAACGCGTGGAGCTTGAATGGTTAACTACAGGAGCCGGATCTTGAGTAGGAGGAAGATTTCCGGATAATTTGGGAGCTGGATTTGTAACATTATGATTGACGCCTGAGCCAGTACCACCAGTAATTCTGGAAGTCAAGCTCATTTTTAGCTAATTTGATTGGATACGAATTTCTTGAATTACTGATGTCAAGCGATTACTTCGGGATTAATTTTTAATAATATAAAAT] [-] EMBL CD188774 [GTCCGTTGTTCAGAAGAGTTTGGATGAGTAGGAGGAACAAATGATTTTAAGTGTACATTTGTAGTAATGCTATTATTATTATTATTAATATTGTTTTCATTATCATTGCAACAGACATTGGGATTTTCTATTTGGCTTGGACTACCAACATTAACTGTTGTCCCCGTCCCGACTTTTGTTGTATCGATTGAACTTTTAAGATTATTTTCATTATTAGTTCGATTGTGCTGCTGCTGTTGTTGTTGTTTACTCGAAGCATCATTATTTACACCATTAGTGTTCCCAGTTAATTCGTCAG ] [+] EMBL CD135344 [ ctctACTTTTGTTGTATCGATTGAACTTTTAAGATTATTTTCATTATTAGTTCGATTGTGCTGCTGCTGTTGTTGTTGTTTACTCGAAGCATCATTATTTACACTATTAGTGTTCCCAGTTAATTCGTCAGATTTTGATTCCAGGTTTGGATGACT ACCACCACCACCACCACCGGGACCACCAATAACTGATCCACATTTTTCTGATGAATTATTAGATCCGATAGCTCGACCTTTTCGCTGCCAATCAGCAGGAATTTCTCGAGAATTCGATGATGGTTTACAGTTTTTCTTAT ] [-] EMBL CD089246 [ TGTATCGATTGAACTTTTAAGATTATTTTCATTATTAGTTCGATTGTGCTGCTGCTGTTGTTGTTGTTTACTCGAAGCATCATTATTTACACCATTAGTGTTCCCAGTTAATTCGTCAGATTTTGATTCCAGGTTTGGATGACTACCACCACCACCACCACCACCACCGGGACCACCAATAACTGATCCACATTTTTCTGATGAATTATTAGATCCGATAGCTCGACCTTTTCGCTGCCTATCAGCAGGAATTTCTCGAGA ] [-] EMBL CD185111 [ AACTTTTAAGATTATTTTCATTATTAGTTCGATTGTGCTGCTGCTGTTGTTGTTGTTTACTCGAAGCATCATTATTTACACCATTAGTGTTCCCAGTTAATTCGTCAGATTTTGATTCCAGGTTTGGATGANTACCACCACCACCACCACCACCACCGGGACCACCAATAACTGATCCACATTTTTCTGATGAATTATTAGATCCGATAGCTCGACCTTTTCGCTGCCAATCAGCAGGAATTTCTCGAGAATTCGATGATGGTTTACAGTTTTTCTTATCGGAACCTTGCAAATCACCCACATTGGGGGTCGATTTCTTGTTGGATGAACCATGCTTATGATGATCTGGCAACCGATTGTTATATGCTGATAAATTTGTTCCATCTGTTACTGATGTAGGAGGATTAGGTTCGGGATCAGGATCAA ] [-] EMBL CD060624 [ AAATTTGTTCCATCTATTACTGATGTAGGAGGATTAGGTTCGGGATCAGGATCAAAGATATGTGGAGGCATACGAACTCTGTTCGAAAGTACTCCATGTGGACCGATAGAACGAAGTTCGTCAAAACATGGTTCGGAAAGAGCTTGAGATGGCAAAATTCTCAATGATGGATTATAAACAAGCATTTTACTCATTAGAGCCAACAAATCGGCTGGAGTATGTTGTGGGAAAAACAGTTTTACAGGGCAAGATTGAACGTCCGGGAAGCTGTAAGATCCATACATTGGATTCATACTGGCAATATCTTGTGGAGTAGGAGTGCCTAAAACGCGGATAACTTTAACCAGTTGATCTACTGAATCAGCTCCCATGAACAAACAATGCTGACGTAACATTTCAGCAAGTACACACCCCCCACTCCAAGTATCGATCGCACAAGAATAGTAATGAGC ] [+] EMBL CD155660 [ caCTGTTCGAAAGTACTCCATGTGGACCGATAGAACGAAGTTCGTCAAAACATGGTTCGGAAAGAGCTTGAGATGGCAAAATTCTCAATGATGGATTATAAACAAGCATTTTACTCATTAGAGCCAACAAATCGGCTGGAGTATGTTGTGGGAAAAACAGTTTTACAGGGCAAGATTGAACGTCCGGGAAGCTGTAAGATCCATACATTGGATTCATACTGGCAATATCTTGTGGAGTAGGAGTGCCTAAAACGCGGATAACTTTAACCAGTTGATCTACTGAATCAGCTCCCATGAACAAACAATGCTGACGTAACATTTCAGCAAGTAC ] [-] EMBL CD060757 [ CAGCTCCCATGAACAAACAATGCTGACGTAACATTTCAGCAAGTACACACCCCCCACTCCAAGTATCGATCGCACAAGAATAGTACTGAGCTCCAAATAATAACTCCGGAGCACGATAATACCGAGAGGATATATAAGATACATTAGCAGTTCCCGGCACCATTTCTTTAGCACTTCCAAAGTCACACACTTTTAAAACCATAGTATCTTCATTGACTAGTAAATTGGACGACTTGATATCACGGTGACATATTTGATGGCTATGTAAATAAGCTAAGGATTTGAGCATCTGATACGTAAAAACCTTCACAGTACAAGCTGGTATTTTCAGGTTCCTTTGGGAATAGCGGTAGATGAGTTCACATAAGCTCTCAGGGAAGCATTCCAGCACAAGATGCAAGAACACATCCACTCCCGACGTAGATGCGCCTG ] [+] EMBL CD126124 [ AAAACC TCACAGTACAAGCTGGTATTTTCAGG TCCTTTGGGAATAGCGGTAGATGAGTTCACATAAGCTCTCAGGGAAGCATTCCAGCACAAGATGCAAGAACACATCCACTCCCGACGTAGATGCGCCTGCACGTCCACCACCACTCCTATGGCCCCGACTATTAGACGACGCTGTCGAGTAATAGTAGTAGTAGAACTTTACAACATTAGGATGGTTGTTAAGGCGTTGCATAATACTCAGCTCACGGTTTTTGTAGCGAGGGTCCTGCAAGACACGCTTTACGGCGACCTGCAAACCTTGTCCTCCATCAGAGAAAGTACCGACATCGGAATTCTTTTTACCTGGTGTGCCTGAAGA ] [+] EMBL CD063106 [ GCTCTCAGGGAAGCATTCCAGCACAAGATGCAAGAACACATCCACTCCCGACGTAGATGCGCCTGCACGTCCACCACCACTCCTATGGCCCCGACTATTAGACGACGCTGTCGAGTAATAGTAGTAGTAGAACTTTACAACATTAGGATGGTTGTTAAGGCGTTGCATAATACTCAGCTCACGGTTTTTGTAGCGAGGGTCCTGCAAGACACGCTTTACGGCGACCTGCAAACCTTGTCCTCCATCAGAGAAAGTACCGACATCGGAATTCTTTTTACCTGGTGTGCCTGAAGATGTTGCTGGTATGGTGAGAGTAGCTCTTTCAATCTGTCCAAATGTCCCTTGTCCAATAGTTCCAACAAAGCTCAAATGTATAGGAATATGCTGATTATCCTGTGCACCGCGAGCCTGAACCATCATTTGACGAGGAACAGATAATCCACTGTTTAATAAACTCATCAAGGCCCCACTGGAACAACGCGTGGAGCTTGAATGGTTAACTACAGGAGCCGGATCTTGAGTAGGAGGAAGATTTCCGGATAATTT ] [-] EMBL CD060756 [ ATTAGACGACGCTGTCGAGTAATAGTAGTAGTAGAACTTTACAACATTAGGATGGTTGTTAAGGCGTTGCATAATACTCAGCTCACGGTTTTTGTAGCGAGGGTCCTGCAAGACACGCTTTACGGCGACCTGCg ] [+] EMBL CD190712 [ GTCCTGCAAGACACGCTTTACGGCGACCTGCAAACCTTGTCCTCCATCAGAGAAAGTACCGACATCGGAATTCTTTTTACCTGGTGTGCCTGAAGATGTTGCTGGTACGGCGAGAGTAGCTCTTTCAATCTGTCCAAATGTCCCTTGTCCAATAGTTCCAACAAAGCTCAAATGTATAGGAATATGCTGATTATCCTGTGCACCGCGAGCCTGAACCATCATTTGACGAGGAACAGATAATCCACTGTTTAATAAACTCATCAAGGCCCCACTGGAACAACGCGTGGAGCTTGAATGGTTAACTACAGGAGCCGGATCTTGAGTAGGAGGAAGATTTCCGGATAATTTGGGAGCTGGATTTGTAACATTATGATTGACGCCTGAGCCAGTACCACCAGTAATTCTGGAAGTCAAGCTCATTTTTAGCTAATTTGATTGGATACGAATTTCTTGAATTACTGATGTCAAGCGATTACTTCGGGATTAATTTTTAATAATATAAAAT] [-] EMBL CD192492 [ TTACCTGGTGTGCCTGAAGATGTTGCTGGTACGGCGAGAGTAGCTCTTTCAATCTGTCCAAATGTCCCTTGTCCAATAGTTCCAACAAAGCTCAAATGTATAGGAATATGCTGATTATCCTGTGCACCGCGAGCCTGAACCATCATTTGACGAGGAACAGATAATCCACTGTTTAATAAACTCATCAAGGCCCCACTGGAACAACGCGTGGAGCTTGAATGGTTAACTACAGGAGCCGGATCTTGAGTAGGAGGAAGATTTCCGGATAATTTGGGAGCTGGATTTGTAACATTATGATTGACGCCTGAGCCAGTACCACCAGTAATTCTGGAAGTCAAGCTCATTTTTAGCTA ] consensusID : consensus_10061#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [ATTTTTTTTGGGTATTTTAATTTTAAAAAAGTACTTATAAATCAACTATGTAGATATTTTTTTGAATGATTTTACGTTCAGCATCGGTCATTTGTCCCAGGAAACCCCCGCAGGAGCACTTGTTGAGCTATTTTTCTACTCATATGATGACTGTCGACTGGCTCGTCTGATCCAGCACCCCCGCACACAAAAATAACCCGTGGGAGACCTGTCGTGAACAACACCCTAGATCCGTCCGCAGCAGCGGAACGCGATTCCCTGCTGGCCGTCGCCGTGGCGAAGGTCAAGCGCCATGTGCTGCCGCTGTTGTTGTTGTTTACTCGAAGCATCATTATTTACACTATTAGTGTTCCCAGTTAATTCG] [+] EMBL CD093296 [ATTTTTTTTGGGTATTTTAATTTTAAAAAAGTACTTATAAATCAACTATGTAGATATTTTTTTGAATGATTTTACGTTCAGCATCGGTCATTTGTCCCAGGAAACCCCCGCAGGAGCACTTGTTGAGCTATTTTTCTACTCATATGATGACTGTCGACTGGCTCGTCTGATCCAGCACCCCCGCACACAAAAATAACCCGTGGGAGACCTGTCGTGAACAACACCCTAGATCCGTCCGCAGCAGCGGAACGCGATTCCCTGCTGGCCGTCGCCGTGGCGAAGGTCAAGCGCCATGTGCTGCCGCTGTTGTTGTTGTTTACTCGAAGCATCATTATTTACACTATTAGTGTTCCCAGTTAATTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10061#0 GTCCGTTGTTCAGAAGAGTTTGGATGAGTAGGAGGAACAAATGATTTTAAGTGTACATTT 60 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 GTAGTAATGCTATTATTATTATTATTAATATTGTTTTCATTATCATTGCAACAGACATTG 120 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 GGATTTTCTATTTGGCTTGGACTACCAACATTAACTGTTGTCCCCGTCCCGACTTTTGTT 180 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 GTATCGATTGAACTTTTAAGATTATTTTCATTATTAGTTCGATTGTGCTGCTGCTGTTGT 240 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 TGTTGTTTACTCGAAGCATCATTATTTACACCATTAGTGTTCCCAGTTAATTCGTCAGAT 300 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 TTTGATTCCAGGTTTGGATGACTACCACCACCACCACCACCACCACCGGGACCACCAATA 360 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 ACTGATCCACATTTTTCTGATGAATTATTAGATCCGATAGCTCGACCTTTTCGCTGCCAA 420 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 TCAGCAGGAATTTCTCGAGAATTCGATGATGGTTTACAGTTTTTCTTATCGGAACCTTGC 480 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 AAATCACCCACATTGGGGGTCGATTTCTTGTTGGATGAACCATGCTTATGATGATCTGGC 540 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 AACCGATTGTTATATGCTGATAAATTTGTTCCATCTGTTACTGATGTAGGAGGATTAGGT 600 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 TCGGGATCAGGATCAAAGATATGTGGAGGCATACGAACTCTGTTCGAAAGTACTCCATGT 660 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 GGACCGATAGAACGAAGTTCGTCAAAACATGGTTCGGAAAGAGCTTGAGATGGCAAAATT 720 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 CTCAATGATGGATTATAAACAAGCATTTTACTCATTAGAGCCAACAAATCGGCTGGAGTA 780 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 TGTTGTGGGAAAAACAGTTTTACAGGGCAAGATTGAACGTCCGGGAAGCTGTAAGATCCA 840 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 TACATTGGATTCATACTGGCAATATCTTGTGGAGTAGGAGTGCCTAAAACGCGGATAACT 900 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 TTAACCAGTTGATCTACTGAATCAGCTCCCATGAACAAACAATGCTGACGTAACATTTCA 960 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 GCAAGTACACACCCCCCACTCCAAGTATCGATCGCACAAGAATAGTAATGAGCTCCAAAT 1020 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 AATAACTCCGGAGCACGATAATACCGAGAGGATATATAAGATACATTAGCAGTTCCCGGC 1080 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 ACCATTTCTTTAGCACTTCCAAAGTCACACACTTTTAAAACCATAGTATCTTCATTGACT 1140 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 AGTAAATTGGACGACTTGATATCACGGTGACATATTTGATGGCTATGTAAATA--AGCTA 1198 consensus_10061#1 -------------------------------ATTTTTTTTGGGTATTTTAATTTTAAAAA 29 ** *** *** *** * *** * * consensus_10061#0 AGGATTTGAGCATCTGATACGTAAAAACCTTCACAGTACAAGCTGGTATTTTCAGGTTCC 1258 consensus_10061#1 AGTACTTATAAATCAACTATGTAGATATTTTTTTGA---------ATGATTTTACGTTC- 79 ** * ** *** ** *** * * ** * *** * **** consensus_10061#0 TTTGGGAATAGCGGTAGATGAGTTCACATAAGCTCTCAGGGAAGCATTCCAGCACAAGAT 1318 consensus_10061#1 ------AGCATCGGTC-ATTTGTCCCAGGAAACCCCCGCAGGAGCACTT---------GT 123 * * **** ** ** * ** * * * * **** * * consensus_10061#0 GCAAGAACACATCCACTCCCGACGTAGATGCGCCTGCACGTCCACCACCACTCCTATGGC 1378 consensus_10061#1 TGAGCTATTTTTCTACTCATATGATGACTGT--CGACTGGCTCGT--CTGATCCAGCACC 179 * * ** **** * ** * * * * * *** * consensus_10061#0 CCCGACTATTAGACGACGCTGTCGAGTAATAGTAGTAGTAGAACTTTACAACATTAGGAT 1438 consensus_10061#1 CCCGCACACAAAAATAACCCGTGGGAGACCTGTCGT----GAACA--ACACCCTAGATCC 233 **** * * * * * ** * * ** ** **** *** * * consensus_10061#0 GGTTGTTAAGGCGTTGCATAATACTCAGCTCACGGTTTTTGTAGCGAGGGTCCTGCAAGA 1498 consensus_10061#1 GTCCGCAGCAGCGGAACGCGATTCCCTGCTGGCCGTCGCCGTGGCGAAGGTCAAGCGCCA 293 * * *** * ** * * *** * ** ** **** **** ** * consensus_10061#0 CACGCTTTACGGCGACCTGCAAACCTTGTCCTCCATCAGAGAAAGTACCGACATCGGAAT 1558 consensus_10061#1 TGTGCT----GCCG--CTGTTGTTGTTGTTTACTCGAAGCATCATTATTTACACTATTAG 347 *** * ** *** **** * ** * ** *** * consensus_10061#0 TCTTTTTACCTGGTGTGCCTGAAGATGTTGCTGGTACGGCGAGAGTAGCTCTTTCAATCT 1618 consensus_10061#1 TGTTCCCAGTTAATTCG------------------------------------------- 364 * ** * * * * consensus_10061#0 GTCCAAATGTCCCTTGTCCAATAGTTCCAACAAAGCTCAAATGTATAGGAATATGCTGAT 1678 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 TATCCTGTGCACCGCGAGCCTGAACCATCATTTGACGAGGAACAGATAATCCACTGTTTA 1738 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 ATAAACTCATCAAGGCCCCACTGGAACAACGCGTGGAGCTTGAATGGTTAACTACAGGAG 1798 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 CCGGATCTTGAGTAGGAGGAAGATTTCCGGATAATTTGGGAGCTGGATTTGTAACATTAT 1858 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 GATTGACGCCTGAGCCAGTACCACCAGTAATTCTGGAAGTCAAGCTCATTTTTAGCTAAT 1918 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 TTGATTGGATACGAATTTCTTGAATTACTGATGTCAAGCGATTACTTCGGGATTAATTTT 1978 consensus_10061#1 ------------------------------------------------------------ consensus_10061#0 TAATAATATAAAAT 1992 consensus_10061#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||