These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [AACCTCGGTCCCGTGAATCCGGGCGAGGGACATTGTCAGCCGGTCAGTTTTACTGGGGCGGTATCCTCCCAAAGAGTAACGGAGGAGCGCGAAGGTGGGTTCAGCACGGTCGGTAACCGTGTGTCGAGTGCATTGGCATAAACCCGCCTAACTGTGAGACCCACAAGTCGAGCAGATGCGAAAGCAGGCCAAGTGATCCGGCGGTAGAATGTGGAATTGCCGTCGCTCAACGGATAAAAGGTACCTTAGGGATAACAGGCTGATTTCATCCAAGAGTTCATATCGACGATGAAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGAAGGTCCCAAGGGTCCGGCTGTTCGCCGGTTAAAGCGGCACGCGAGCTGGGTTCAGAACGTCGCGAGACAGTTCGGTCCTCTATCCTCTGTGGGCGCAGGAAAATTGCGGGGTTCGGTTCCTAGTACGAGAGGACCGGAATCGACGCACCTCTGGTGCACCGGTTGTTCTGTCAAGAGCATGGCCGGGTAGCTATGTGCGGAAGGGATAAGCGCTGAAAGCATCTA] [+] EMBL CD088879 [AACCTCGGTCCCGTGAATCCGGGCGAGGGACATTGTCAGCCGGTCAGTTTTACTGGGGCGGTATCCTCCCAAAGAGTAACGGAGGAGCGCGAAGGTGGGTTCAGCACGGTCGGTAACCGTGTGTCGAGTGCATTGGCATAAACCCGCCTAACTGTGAGACCCACAAGTCGAGCAGATGCGAAAGCAGGCCAAGTGATCCGGCGGTAGAATGTGGAATTGCCGTCGCTCAACGGATAAAAGGTACCTTAGGGATAACAGGCTGATTTCATCCAAGAGTTCATATCGACGATGAAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGAAGGTCCCAAGGGTCCGGCTGTTCGCCGGTTAAAGCGGCACGCGAGCTGGGTTCAGAACGTCGCGAGACAGTTCGGTCCTCTATCCTCTGTGGGCGCAGGAAAATTGCGGGGTTCGGTTCCTAGTACGAGAGGACCGGAATCGACGCACCTCTGGTGCACCGGTTGTTCTGTCAAGAGCATGGCCGGGTAGCTATGTGCGGAAGGGATAAGCGCTGAAAGCATCTA] consensusID : consensus_10063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [AGCTTAGCATTGAGTTCTGGTACTGGATGTGTAGGATAGGTGGGAGACTGAGATATGGTGTCGCTAGGCATCATGGAGTCGACGTTGAAATACCACCCTTCTTGTACTGGAATTCTAACCTAAATAGGGACATTGCTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGGATAACGGAGGCTTTCAAAGGTACCCTCAGCACGCTTGGTAACCGTGCGTAGAGTGCAATAGCAAAAGGGTGCTTGACTGTGAGACAAACAAGTCGATCAGGTACGAAAGTAGGATATAGTGATCCGGTGGTATAGTATGGAATAGCCATCGCTCAAAGGATAAAAGGTACTCTGGGGATAACAGGCTGATCTCCCCCAAGAGCTCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCGTCACATCCTGGGGCTGGAGAAGGTCCCAAGGGTTCGGCTGTTCGCCGATTAAAGTGGCACGCGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGG] [-] EMBL CD087512 [AGCTTAGCATTGAGTTCTGGTACTGGATGTGTAGGATAGGTGGGAGACTGAGATATGGTGTCGCTAGGCATCATGGAGTCGACGTTGAAATACCACCCTTCTTGTACTGGAATTCTAACCTAAATAGGGACATTGCTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGGATAACGGAGGCTTTCAAAGGTACCCTCAGCACGCTTGGTAACCGTGCGTAGAGTGCAATAGCAAAAGGGTGCTTGACTGTGAGACAAACAAGTCGATCAGGTACGAAAGTAGGATATAGTGATCCGGTGGTATAGTATGGAATAGCCATCGCTCAAAGGATAAAAGGTACTCTGGGGATAACAGGCTGATCTCCCCCAAGAGCTCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCGTCACATCCTGGGGCTGGAGAAGGTCCCAAGGGTTCGGCTGTTCGCCGATTAAAGTGGCACGCGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGG] consensusID : consensus_10063#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [TTGACTGGGGTGGTCGCGTCCCAAAGAGTAACGGAGGCTTCCAAAGGTACGTTCAACACGCTTAGTAACCGTGTGTAGAGTGCATTGGCATAAACGTGCTTGACTGTAAGGCAAACAAGCCGAGCAGGGACGAAAGTCGGGCAAAATNATCGGGGGGGGCCGTANGGAAGGGCGGTCGCTCATAGGATAAAAGGTACGCTGGACAACAGGCTGATCTCCCCCAAGAGCTCACACCGACGGGGAGGTTTGGCACATAAGAATAGGCTCGTCACATCCTGGGGGTGGAGAAGGTCCCAAAGGTTGAGCTGTTCGCTCATTAAAGTGGCACGCGAGGTGGGTTCAGAACGTCGCAAGACAGTTCGGTCCCTG] [-] EMBL CD087728 [TTGACTGGGGTGGTCGCGTCCCAAAGAGTAACGGAGGCTTCCAAAGGTACGTTCAACACGCTTAGTAACCGTGTGTAGAGTGCATTGGCATAAACGTGCTTGACTGTAAGGCAAACAAGCCGAGCAGGGACGAAAGTCGGGCAAAATNATCGGGGGGGGCCGTANGGAAGGGCGGTCGCTCATAGGATAAAAGGTACGCTGGACAACAGGCTGATCTCCCCCAAGAGCTCACACCGACGGGGAGGTTTGGCACATAAGAATAGGCTCGTCACATCCTGGGGGTGGAGAAGGTCCCAAAGGTTGAGCTGTTCGCTCATTAAAGTGGCACGCGAGGTGGGTTCAGAACGTCGCAAGACAGTTCGGTCCCTG] consensusID : consensus_10063#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 362 fasta sequence [GACCCCGTGAACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTAGGATAGGTGGGAGGCTGTGAGCCGGTGTCGCTAGGCATCGGGGAGCCAACGTTGAAATACCACCCTTTGGTTATTTGGATTCTAACTTGCCTGTGGCGAGGACACCGTTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTCCAAAGGTGACCTCAGCACGCTTGGTAACCGTGCGTTGAGTGCAATAGCATAAGGTCGCTTGACAGTGAGACATACAAGTCGAGCTGGATGGAAACATGGGTATAGTGATCCGGCGGTTCTGTATGGAAGGGCCGTCGCTCAAAGGAT] [+] EMBL CD087377 [GACCCCGTGAACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTACGATACGTGGGAGGCTGTGAGCCGGTGTCGCTAGGCATCGGGGAGCCAACGTTGAAATACCACCCTTTGG TATTTGGATTCTAAC ] [+] EMBL CD087465 [GACCCCGTGTACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTANGATAGGTGGGAGGCTGTGAGCCGGTGTCGCTAGGCATCGGGGAGCCAACGTTGAAATACCACCCTTTGGTTATTTGGATTCTAAC ] [+] EMBL CD087449 [GACCCCGTGAACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTAGGATAGGTGGGAGGCTGTGACCCGGTGTCTCTAGGCATCGGGGAGCCAACGTTGAAATACCACCCTTTGGTTATTTGGATTCTAAC ] [-] EMBL CD087381 [ ACCCCGTGAACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTAGGATAGGTGGGAGGCTGTGAGCCGGTGTCGCTAGGCATCGGGGAGCCAACGTTGAAATACCACCCTTTGGTTATTTGGATTCTAACTTGCCTGTGGCGAGGAg ] [-] EMBL CD087408 [ ACCCCGTGAACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTAGGATAGGTGGGAGGCTGTGAGCCGGTGTCGCTAGGCATCGGGGAGCCAACGTTGAAATACCACCCTTTGGTTATTTGGATTCTAACT ] [+] EMBL CD086812 [ AAATACCACCCTTTGGTTATTTGGATTCTAACTTGCCTGTGGCGAGGACACCGTTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTCCAAAGGTGACCTCAGCACGCTTGGTAACCGTGCGTTGAGTGCAATAGCATAAGGTCGCTTGACAGTGAGACATACAAGTCGAGCTGGATGGAAACATGGGTATAGTGATCCGGCGGTTCTGTATGGAAGGGCCGTCGCTCAAAGGAT] [-] EMBL CD086788 [ AATACCACCCTTTGGTTATTTGGATTCTAACTTGCCTGTGGCGAGGACACCGTTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTCCAAAGGTGACCTCAGCACGCTTGGTAACCGTGCGTTGAGTGCAATAGCATAAGGTCGCTTGACAGTGAGACATACAAGTCGAGCTGGATGGAAACATGGGTATAGTGATCCGGCGGTTCTGTATGGAAGGGCCGTCGCTCAAAGGAT] consensusID : consensus_10063#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [GCGGTAACGCTAGTTATCGTGGAGCCGACGTTGAAATACCACCCTTCCGTTACTTGTTATCTAACTTGCCTCGGGCAAAGACAGTGCATGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTTTCAAAGGTACCCTCCGCACGCTTGGTAACCGTGCATAGAGCGCAATAGTATAAGGGTGCTTGACTGTGAGACAAACAAGTCGAGCAGGAACGAAAGTTGGATATAGAGATCCGGTGCTTCTGTATGGAATGGGCATCGATCAGAGGATAAAAG] [+] EMBL CD088225 [GCGGTAACGCTAGTTATCGTGGAGCCGACGTTGAAATACCACCCTTCCGTTACTTGTTATCTAACTTGCCTCGGGCAAAGACAGTGCATGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTTTCAAAGGTACCCTCCGCACGCTTGGTAACCGTGCATAGAGCGCAATAGTATAAGGGTGCTTGACTGTGAGACAAACAAGTCGAGCAGGAACGAAAGTTGGATATAGAGATCCGGTGCTTCTGTATGGAATGGGCATCGATCAGAGGATAAAAG] consensusID : consensus_10063#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [AGTGGGAATCTCGTTAATCCACTTCACTGCCTCGTCATCGAATTATAGCTTGCCTTGAGCGGATACAGGGCATGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTTTCAAAGGTACCCTCCGCGGGCTTGGTAACCGTGCATAGAGCGCAATAGTATAAGGGTGCTTGACTGTGAGACAAAC] [+] EMBL CD088226 [AGTGGGAATCTCGTTAATCCACTTCACTGCCTCGTCATCGAATTATAGCTTGCCTTGAGCGGATACAGGGCATGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTTTCAAAGGTACCCTCCGCGGGCTTGGTAACCGTGCATAGAGCGCAATAGTATAAGGGTGCTTGACTGTGAGACAAAC] consensusID : consensus_10063#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence [TTGAAATACTACCCTTTGTTTACTTGGAGCCTAACTTCTACGGAAGGACATTGCGTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTTCAAAGGTACCCTCAGCACGCTTGGTAACCGTGCGTA] [+] EMBL CD123928 [TTGAAATACTACCCTTTGTTTACTTGGAGCCTAACTTCTACGGAAGGACATTGCGTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTTCAAAGGTACCCTCAGCACGCTTGGTAACCGTGCGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10063#3 GACCCCGTGAACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTAGGATAG 60 consensus_10063#6 ------------------------------------------------------------ consensus_10063#4 ------------------------------------------------------------ consensus_10063#5 ------------------------------------------------------------ consensus_10063#1 ---------------------AGCTTAGCATTGAGTTCTGGTACTGGATGTGTAGGATAG 39 consensus_10063#0 ------------------------------------------------------------ consensus_10063#2 ------------------------------------------------------------ consensus_10063#3 GTGGGAGGCTGTGAGCCGGTGTCGCTAGGCATCGGGGAGCCAACGTTGAAATAC--CACC 118 consensus_10063#6 ---------------------------------------------TTGAAATAC--TACC 13 consensus_10063#4 ---------------GCGGTAACGCTAGTTATCGTGGAGCCGACGTTGAAATAC--CACC 43 consensus_10063#5 --------------------------------AGTGGGAATCTCGTTAATCCACTTCACT 28 consensus_10063#1 GTGGGAGACTGAGATATGGTGTCGCTAGGCATCATGGAGTCGACGTTGAAATAC--CACC 97 consensus_10063#0 ------------------------------------------------------------ consensus_10063#2 ------------------------------------------------------------ consensus_10063#3 CTTTGGTTATTTGGATTCTAACTTGCCTGTGGCGAGGACACCGTTTGGTGGGTAGTTTGA 178 consensus_10063#6 CTTTGTTTACTTGGAGCCTAACTT--CTACGG-AAGGACATTGCGTGGTGGGTAGTTTGA 70 consensus_10063#4 CTTCCGTTACTTGTTATCTAACTTGCCTCGGGCAAAGACAGTGCATGATGGGTAGTTTGA 103 consensus_10063#5 GCCTCGTCA-TCGAATTATAGCTTGCCTTGAGCGGATACAGGGCATGATGGGTAGTTTGA 87 consensus_10063#1 CTTCTTGTACTGGAATTCTAACCT-----AAATAGGGACATTGCTTGGTGGGTAGTTTGA 152 consensus_10063#0 --------AACCTCGGTCCCGTGAATCCGGGCGAGGGACATTGTCAGCCGGTCAGTTTTA 52 consensus_10063#2 --------------------------------------------------------TTGA 4 ** * consensus_10063#3 CTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTCCAAAGGTGACCTCAGCACGCTTG 238 consensus_10063#6 CTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTTCAAAGGTACCCTCAGCACGCTTG 130 consensus_10063#4 CTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTTTCAAAGGTACCCTCCGCACGCTTG 163 consensus_10063#5 CTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTTTCAAAGGTACCCTCCGCGGGCTTG 147 consensus_10063#1 CTGGGGTGGTCGCCTCCAAAAGGATAACGGAGGCTTTCAAAGGTACCCTCAGCACGCTTG 212 consensus_10063#0 CTGGGGCGGTATCCTCCCAAAGAGTAACGGAGGAGCGCGAAGGTGGGTTCAGCACGGTCG 112 consensus_10063#2 CTGGGGTGGTCGCGTCCCAAAGAGTAACGGAGGCTTCCAAAGGTACGTTCAACACGCTTA 64 ****** *** * *** *** ********* * ***** ** * * * consensus_10063#3 GTAACCGTGCGTTGAGTGCAATAGCATAAGGTCGCTTGACAGTGAGACATACAAGTCGAG 298 consensus_10063#6 GTAACCGTGCGTA----------------------------------------------- 143 consensus_10063#4 GTAACCGTGCATAGAGCGCAATAGTATAAGGGTGCTTGACTGTGAGACAAACAAGTCGAG 223 consensus_10063#5 GTAACCGTGCATAGAGCGCAATAGTATAAGGGTGCTTGACTGTGAGACAAAC-------- 199 consensus_10063#1 GTAACCGTGCGTAGAGTGCAATAGCAAAAGGGTGCTTGACTGTGAGACAAACAAGTCGAT 272 consensus_10063#0 GTAACCGTGTGTCGAGTGCATTGGCATAAACCCGCCTAACTGTGAGACCCACAAGTCGAG 172 consensus_10063#2 GTAACCGTGTGTAGAGTGCATTGGCATAAACGTGCTTGACTGTAAGGCAAACAAGCCGAG 124 ********* * consensus_10063#3 CTGGATGGAAACATGGGTATAGTGATCCGGCGGTTCTGTATGGAAGGGCCGTCGCTCAAA 358 consensus_10063#6 ------------------------------------------------------------ consensus_10063#4 CAGGAACGAAAGTTGGATATAGAGATCCGGTGCTTCTGTATGGAATGGGCATCGATCAGA 283 consensus_10063#5 ------------------------------------------------------------ consensus_10063#1 CAGGTACGAAAGTAGGATATAGTGATCCGGTGGTATAGTATGGAATAGCCATCGCTCAAA 332 consensus_10063#0 CAGATGCGAAAG-CAGGCCAAGTGATCCGGCGGTAGAATGTGGAATTGCCGTCGCTCAAC 231 consensus_10063#2 CAGGGACGAAAGTCGGGCAAAATNATCGGGGGGGGCCGTANGGAAGGGCGGTCGCTCATA 184 consensus_10063#3 GGAT-------------------------------------------------------- 362 consensus_10063#6 ------------------------------------------------------------ consensus_10063#4 GGATAAAAG--------------------------------------------------- 292 consensus_10063#5 ------------------------------------------------------------ consensus_10063#1 GGATAAAAGGTACTCTGGGGATAACAGGCTGATCTCCCCCAAGAGCTCACATCGACGGGG 392 consensus_10063#0 GGATAAAAGGTACCTTAGGGATAACAGGCTGATTTCATCCAAGAGTTCATATCGACGATG 291 consensus_10063#2 GGATAAAAGGTACGCT--GGACAACAGGCTGATCTCCCCCAAGAGCTCACACCGACGGGG 242 consensus_10063#3 ------------------------------------------------------------ consensus_10063#6 ------------------------------------------------------------ consensus_10063#4 ------------------------------------------------------------ consensus_10063#5 ------------------------------------------------------------ consensus_10063#1 AGGTTTGGCACCTCGATGTCGGCTCGTCACATCCTGGGGCTGGAGAAGGTCCCAAGGGTT 452 consensus_10063#0 AAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGAAGGTCCCAAGGGTC 351 consensus_10063#2 AGGTTTGGCACATAAGAATAGGCTCGTCACATCCTGGGGGTGGAGAAGGTCCCAAAGGTT 302 consensus_10063#3 ------------------------------------------------------------ consensus_10063#6 ------------------------------------------------------------ consensus_10063#4 ------------------------------------------------------------ consensus_10063#5 ------------------------------------------------------------ consensus_10063#1 CGGCTGTTCGCCGATTAAAGTGGCACGCGAGCTGGGTTCAGAACGTCGTGAGACAGTTCG 512 consensus_10063#0 CGGCTGTTCGCCGGTTAAAGCGGCACGCGAGCTGGGTTCAGAACGTCGCGAGACAGTTCG 411 consensus_10063#2 GAGCTGTTCGCTCATTAAAGTGGCACGCGAGGTGGGTTCAGAACGTCGCAAGACAGTTCG 362 consensus_10063#3 ------------------------------------------------------------ consensus_10063#6 ------------------------------------------------------------ consensus_10063#4 ------------------------------------------------------------ consensus_10063#5 ------------------------------------------------------------ consensus_10063#1 G----------------------------------------------------------- 513 consensus_10063#0 GTCCTCTATCCTCTGTGGGCGCAGGAAAATTGCGGGGTTCGGTTCCTAGTACGAGAGGAC 471 consensus_10063#2 GTCCCTG----------------------------------------------------- 369 consensus_10063#3 ------------------------------------------------------------ consensus_10063#6 ------------------------------------------------------------ consensus_10063#4 ------------------------------------------------------------ consensus_10063#5 ------------------------------------------------------------ consensus_10063#1 ------------------------------------------------------------ consensus_10063#0 CGGAATCGACGCACCTCTGGTGCACCGGTTGTTCTGTCAAGAGCATGGCCGGGTAGCTAT 531 consensus_10063#2 ------------------------------------------------------------ consensus_10063#3 ------------------------------- consensus_10063#6 ------------------------------- consensus_10063#4 ------------------------------- consensus_10063#5 ------------------------------- consensus_10063#1 ------------------------------- consensus_10063#0 GTGCGGAAGGGATAAGCGCTGAAAGCATCTA 562 consensus_10063#2 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||