cluster # 10064

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Schistosoma mansoni
cluster # 10064 cluster # 10064 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10064#0 length = 545 sequences # 6

consensus_10064#1 length = 497 sequences # 7

consensusID : consensus_10064#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 545
fasta sequence

                              [GGTNTACGTTTGCCAACCGCAGTGAAATGGATCATATGAATGGTGCAGTCGCTAGTCAATATCAGTATCAACCAGCTATGGTAATTGGTGATCCAGCCTGTATGGATCCCACTTATTTCTGTAATCAAAATG-TAATCAAT-GGACTGCCCATACCAAATGCTGAAGGTGTTCAACGCTATTATCAACCAAGTAATAATGATGTTACCGGTCTAATAAATGGTCATCATCATAATAGCAATAATAACCATATCAATAATATGCCCACAATGATTACTAGGATATCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACAGCAGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCATCTACACGTGGAGCCGGATGGCAAGGTTGTAGAGCTAATAAAGGTGTAAAAGCTCCAGGTGCATATTACTATGAGGCAGCTTGTTTAGAGGAAGGACTTATACGTGTCGGTTGGTCAACTAATGATGCCAATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCGATGCT]

[-] EMBL CD119291             [GGTNTACGTTTGCCAACCGCAGTGAAATGGATCATATGAATGGTGCAGTCGCTAGTCAATATCAGTATCAACCAGCTATGGTAATTGGTGATCCAGCCTGTATGGATCCCACTTATTTCTGTAATCAAAATG TAATCAAT GGACTGCCCATACCCAATGCTGAAGGTGTTCAACGCTATTATCAACCAAGTAATAATGATGTTACCGGTCTAATAAATGGTCATCATCATAATAGCAATAATAACCATATCAATAATATGCCCACAATGATTACTAGGATATCATTCGAACCTGAACTTTGGCGTATAACTGGAGCTGATTGTACAGCAG                                                                                                                                                                                                                       ]
[+] EMBL CD158142             [                                             CAGTCGCTAGTCAATATCAGTATCAACCAGCTATGGTAATTGGAGATCCAGCCTGTATGGATCCCACTTATTTCTGTAATCAAAATGATAATCAATAGGACTGCCCATACCAAATGCTGAAGGTGTTCAACGCTATTATCAACCAAGTAATAATGATGTTACCGGTCTAATAAATGGTCATCATCATAATAGCAATAATAACCATATCAATAATATGCCCACAATGATTACTAGGATATCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACAGCAGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCATCTACACGTGCAGCCGGATGACAAGGTTGTAGAGCTAATAAAGGTGTAAAAGCTCCAGG                                                                                                                         ]
[+] EMBL CD096202             [                                                                                     TGGTGATCCAGCCTGTATGGATCACACTTATTTCTGTAATCAAAATG TAATCAAT GGACTGCCCATACCAAATGCTGAAGGTGTTCAACGCTATTATCAACCAAGTAATAATGATGTTACCGGTCTAATAAATGGTCATCATCATAATAGCAATAATAACCATATCAATAATATGCCCACAATGATTACTAGGATATCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACAGCAGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCATCTACACGTGGAGCCGGATGGCAAGGTTGTAGAGCTAATAAAGGTGTAAAAGCTCCAGGTGCATATTACTATGAGGCAGCTTGTTTAGAGGAAGGACTTATACGTGTCGGTTGGTCAACTAATGATGCCAACTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCGATGC ]
[-] EMBL CD146825             [                                                                                      GGTGATCCAGCCTGTATGGATCCCACTTATTTCTGTAATCAAAATG TAATCAAT GGACTGCCCATACCAAATGCTGAAGGTGTTCAACGCTATTATCAACCAAGTAATAATGATGTTACCGGTCTAATAAATGGTCATCATCATAATAGCAATAATAACCATATCAATAATATGCCCACAATGATTACTAGGATATCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACAGCAGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCATCTACACGTGGAGCCGGATGGCAAGGTTGTAGAGCTAATAAAGGTGTAAAAGCTCCAGGTGCATATTACTATGAGGCAGCTTGTTTAGAGGAAGGACTTATACGTGTCGGTTGGTCAACTAATGATGCCAATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCGATGCT]
[-] EMBL CD146901             [                                                                                      GGTGATCCAGCCTGTATGGATCCCACTTATTTCTGTAATCAAAATG TAATCAAT GGACTGCCCATACCAAATGCTGAAGGTGTTCAACGCTATTATCAACCAAGTAATAATGATGTTACCGGTCTAATAAATGGTCATCATCATAATAGCAATAATAACCATATCAATAATATGCCCACAATGATTACTAGGATATCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACAGCAGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCATCTACACGTGGAGCCGGATGGCAAGGTTGTAGAGCTAATAAAGGTGTAAAAGCTCCAGGTGCATATTACTATGAGGCAGCTTGTTTAGAGGAAGGACTTATACGTGTCGGTTGGTCAACTAATGATGCCAATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCGATGCT]
[-] EMBL CD152570             [                                                                                                                                                                                                                                                                                                                                                           CTCGAGGCTTAGATGTTGCATCTACACGTGGAGCCGGATGGCAAGGTTGTAGAGCTAATAAAGGTGTAAAAGCTCCAGGTGCATATTATTATGAGGCAGCTTGTTTAGAGGAAGGACTTATACGTGTCGGTTGGTCAACTAATGATGCCAATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTCATGGATCCGA    ]




>consensus_10064#0
GGTNTACGTTTGCCAACCGCAGTGAAATGGATCATATGAATGGTGCAGTCGCTAGTCAAT
ATCAGTATCAACCAGCTATGGTAATTGGTGATCCAGCCTGTATGGATCCCACTTATTTCT
GTAATCAAAATGTAATCAATGGACTGCCCATACCAAATGCTGAAGGTGTTCAACGCTATT
ATCAACCAAGTAATAATGATGTTACCGGTCTAATAAATGGTCATCATCATAATAGCAATA
ATAACCATATCAATAATATGCCCACAATGATTACTAGGATATCATTCGAACCTGAACATT
GGCGTATAACTGGAGCTGATTGTACAGCAGGCTTAGGAATAGATGCTCGAGGCTTAGATG
TTGCATCTACACGTGGAGCCGGATGGCAAGGTTGTAGAGCTAATAAAGGTGTAAAAGCTC
CAGGTGCATATTACTATGAGGCAGCTTGTTTAGAGGAAGGACTTATACGTGTCGGTTGGT
CAACTAATGATGCCAATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCG
ATGCT

consensusID : consensus_10064#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 497
fasta sequence

                              [CGGTCGCTAGTCAATATCAGTATCAACCAGCCATGGTAAGTGGTGATCCAGCGTGTATGAATCCCGCTTATTTCTGTAGTCAAAGTATAATCAATGGACTGCCCATACCAACTGCTCAAGGTGTTCAACGCTATTATCAATCAAGTAGTAATGACGTTACCGGCCTGATGAATGATCATTATAGTAGTAAAAATAATCATATCAACAATATGACTGTAATGATTACTAGAATACCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACACCGGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCATCTACACGTGGAGCTGGATGGCAAGGTTGCAGAGCTAATAAAGGTGTGAAAGCTCCAGGTGCATATTACTATGAAGCAGTTTGTCTAGAGGAAGGACTTATACGTGTCGGTTGGTCAACTAATGATGCAGATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCGATGCT]

[+] EMBL CD136882             [CGGTCGCTAGTCAATATCAGTATCAACCAGCCATGGTAAGTGGTGATCCAGCGTGTATGAATCCCGCTTATTTCTGTAGTCAAAGTATAATCAATGGACTGCCCATACCAACTGCTCAAGGTGTTCAACGCTATTATCAATCAAGTAGTAATGACGTTACCGGCCTGATGAATGATCATTATAGTAGTAAAAATAATCATATCAACAATATGACTGTAATGATTACTAGAATACCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACACCGGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCATCTACACGTGGAGCTGGATGGCAAGGTTGCAGAGCTAATAAAGGTGTGAAAGCTCCAGG                                                                                                                         ]
[+] EMBL CD146833             [                                        TGGTGATCCAGCGTGTATGAATCCCGCTTATTTCTGTAGTCAAAGTATAATCAATGGACTGCCCATACCAACTGCTCAAGGTGTTCAACGCTATTATCAATCAAGTAGTAATGACGTTACCGGCCTGATGAATGATCATTATAGTAGTAAAAATAATCATATCAACAACATGACTGTAATGATTACTAGAATACCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACACCGGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCATCTACACGTGGAGCTGGATGGCAAGGTTGCAGAGCTAATAAAGGTGTGAAAGCTCCAGGTGCATATTACTATGAAGCAGTTTGTCTAGAGGAAGGACTTATACGTGTCGGTTGGTCAACTAATGATGCAGATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCGATGC ]
[+] EMBL CD146824             [                                        TGGTGATCCAGCGTGTATGAATCCCGCTTATTTCTGTAGTCAAAGTATAATCAATGGACTGCCCATACCAACTGCTCAAGGTGTTCAACGCTATTATCAATCAAGTAGTAATGACGTTACCGGCCTGATGAATGATCATTATAGTAGTAAAAATAATCATATCAACAATATGACTGTAATGATTACTAGAATACCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACACCGGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCATCTACACGTGGAGCTGGATGGCAAGGTTGCAGAGCTAATAAAGGTGTGAAAGCTCCAGGTGCATATTACTATGAAGCAGTTTGTCTAGAGGAAGGACTTATACGTGTCGGTTGGTCAACTAATGATGCAGATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCGATGC ]
[-] EMBL CD096255             [                                         GGTGATCCAGCGTGTATGAATCCCGCTTATTTCTGTAGTCAAAGTATAATCAATGGACTGCCCATACCAACTGCTCAAGGTGTTCAACGCTATTATCGATCAAGTAGTAATGACGTTACCGGCCTGATGAATGATCATTATAGTAGTAAAAATAATCATATCAACAATATGACTGTAATGATTACTAGAATACCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACACCGGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCATCTACACGTGGAGCTGGATGGCAAGGTTGCAGAGCTAATAAAGGTGTGAAAGCTCCAGGTGCATATTACTATGAAGCAGTTTGTCTAGAGGAAGGACTTATACGTGTCGGTTGGTCAACTAATGATGCAGATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCGATGCT]
[-] EMBL CD146776             [                                         GGTGATCCAGCGTGTATGAATCCCGCTTATTTCTGTAGTCAAAGTATAATCAATGGACTGCCCATACCAACTGCTCAAGGTGTTCAACGCTATTATCAATCAAGTAGTAATGACGTTACCGGCCTGATGAATGATCATTATAGTAGTAAAAATAATCATATCAACAATATGACTGTAATGATTACTAGAATACCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACACCGGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCATCTACACGTGGAGCTGGATGGCAAGGTTGCAGAGCTAATAAAGGTGTGAAAGCTCCAGGTGCATATTACTATGAAGCAGTTTGTCTAGAGGAAGGACTTATACGTGTCGGTTGGTCAACTAATGATGCAGATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCGATGCT]
[-] EMBL CD147005             [                                                      GTATGAATCCCGCTTATTTCTGTAGTCAAAGTATAATCAATGGACTGCCCATACCAACTGCTCAAGGTGTTCAACGCTATTATCAATCAAGTAGTAATGACGTTACCGGCCTGATGAATGATCATTATAGTAGTAAAAATAATCATATCAACAATATGACTGTAATGATTACTAGAATACCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACACCGGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCATCTACACGTGGAGCTGGATGGCAAGGTTGCAGAGCTAATAAAGGTGTGAAAGCTCCAGGTGCATATTACTATGAAGCAGTTTGTCTAGAGGAAGGACTTATACGTGTCGGTTGGTCAACTAATGATGCAGATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCGATGCT]
[+] EMBL CD086154             [                                                                                                                                                                                    ATAGTAGTAAAAATAATCATATCAACAATATGACTGTAATGATTACTAGAATACCATTCGAACCTGAACATTGGCGTATAACTGGAGCTGATTGTACACCGGGCTTAGGAATAGATGCTCGAGGCTTAGATGTTGCAcc                                                                                                                                                                                  ]




>consensus_10064#1
CGGTCGCTAGTCAATATCAGTATCAACCAGCCATGGTAAGTGGTGATCCAGCGTGTATGA
ATCCCGCTTATTTCTGTAGTCAAAGTATAATCAATGGACTGCCCATACCAACTGCTCAAG
GTGTTCAACGCTATTATCAATCAAGTAGTAATGACGTTACCGGCCTGATGAATGATCATT
ATAGTAGTAAAAATAATCATATCAACAATATGACTGTAATGATTACTAGAATACCATTCG
AACCTGAACATTGGCGTATAACTGGAGCTGATTGTACACCGGGCTTAGGAATAGATGCTC
GAGGCTTAGATGTTGCATCTACACGTGGAGCTGGATGGCAAGGTTGCAGAGCTAATAAAG
GTGTGAAAGCTCCAGGTGCATATTACTATGAAGCAGTTTGTCTAGAGGAAGGACTTATAC
GTGTCGGTTGGTCAACTAATGATGCAGATTTAGAACTTGGTGCAGATAATTATGGTTTTG
GTTATGGATCCGATGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10064#0      GGTNTACGTTTGCCAACCGCAGTGAAATGGATCATATGAATGGTGCAGTCGCTAGTCAAT 60
consensus_10064#1      ---------------------------------------------CGGTCGCTAGTCAAT 15
                                                                    * *************

consensus_10064#0      ATCAGTATCAACCAGCTATGGTAATTGGTGATCCAGCCTGTATGGATCCCACTTATTTCT 120
consensus_10064#1      ATCAGTATCAACCAGCCATGGTAAGTGGTGATCCAGCGTGTATGAATCCCGCTTATTTCT 75
                       **************** ******* ************ ****** ***** *********

consensus_10064#0      GTAATCAAAATGTAATCAATGGACTGCCCATACCAAATGCTGAAGGTGTTCAACGCTATT 180
consensus_10064#1      GTAGTCAAAGTATAATCAATGGACTGCCCATACCAACTGCTCAAGGTGTTCAACGCTATT 135
                       *** ***** * ************************ **** ******************

consensus_10064#0      ATCAACCAAGTAATAATGATGTTACCGGTCTAATAAATGGTCATCATCATAATAGCAATA 240
consensus_10064#1      ATCAATCAAGTAGTAATGACGTTACCGGCCTGATGAATG---ATCATTATAGTAGTAAAA 192
                       ***** ****** ****** ******** ** ** ****   ***** *** *** ** *

consensus_10064#0      ATAACCATATCAATAATATGCCCACAATGATTACTAGGATATCATTCGAACCTGAACATT 300
consensus_10064#1      ATAATCATATCAACAATATGACTGTAATGATTACTAGAATACCATTCGAACCTGAACATT 252
                       **** ******** ****** *   ************ *** ******************

consensus_10064#0      GGCGTATAACTGGAGCTGATTGTACAGCAGGCTTAGGAATAGATGCTCGAGGCTTAGATG 360
consensus_10064#1      GGCGTATAACTGGAGCTGATTGTACACCGGGCTTAGGAATAGATGCTCGAGGCTTAGATG 312
                       ************************** * *******************************

consensus_10064#0      TTGCATCTACACGTGGAGCCGGATGGCAAGGTTGTAGAGCTAATAAAGGTGTAAAAGCTC 420
consensus_10064#1      TTGCATCTACACGTGGAGCTGGATGGCAAGGTTGCAGAGCTAATAAAGGTGTGAAAGCTC 372
                       ******************* ************** ***************** *******

consensus_10064#0      CAGGTGCATATTACTATGAGGCAGCTTGTTTAGAGGAAGGACTTATACGTGTCGGTTGGT 480
consensus_10064#1      CAGGTGCATATTACTATGAAGCAGTTTGTCTAGAGGAAGGACTTATACGTGTCGGTTGGT 432
                       ******************* **** **** ******************************

consensus_10064#0      CAACTAATGATGCCAATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCG 540
consensus_10064#1      CAACTAATGATGCAGATTTAGAACTTGGTGCAGATAATTATGGTTTTGGTTATGGATCCG 492
                       *************  *********************************************

consensus_10064#0      ATGCT 545
consensus_10064#1      ATGCT 497
                       *****