These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1523 fasta sequence [GCAGGTGGTAAATCAGGAAAGTAGATAATGATAATAATAAAGGGAAGAATAAAGGCGTAAACAAAAGAAAAGGAAGTTTTGTAGCTCATAAAACACAAGAAAATTACTACTTTTTACATACAGGTGGTTAGTGTATAAACGAATATGTTCATGTGTATGAAAAAAAGAACATATCAAGTGATTGAAATATACACCATAGATATCGTTGAACCTGTACATATTACATTAATGAAATTACGTGGGTAGTTTTTGACCGTGATTAACAGGACGTTGTTGAATACTTGATGGTGGTGGTCGAGGTTCCGGACCATAATATCGTTCAACAATATAATATCGTATTTCAACCTCTGGATAGTTTTCTTTTTCTTCAACTACTGCTGGTTGAAAAGAAGAACGTTTGACTGGATAATCTTTAANACAANTTGTTTGTATTGACGTCGACAGTGGAGGCAACGGACAATTAGGTGGACTTGCAGTAGTTAGTGGCATTGTATGTTCAGGTGTAGAAAGTGTATGCGAATGACGTTTACAACCACCTGTCATAGTTGATAATAATTTATTTGGGTCGCCGCTACTGCTACTATTACTACTACAATTCCATATACGTTCAGGAGCGGTAAATACTAAATGTCCAATATCATTCACATCAACATCATTCCCATTAATGTTGAACTGACTTAGATTTTGGATGTAATCGTTTGTTGT-TGTCGCATCTTCAGACAGATCAATGTCCATTAGTGAAGATGAATCAAGATCGGATAATGAATGTGGTTCAGTAGATACAACAGGATAGTTTCTAAAGTTAGACTTATTATTATTAGTTTGAGATGTGTTTAATTTATTCTGAATTTGGGGTATGGAACCGTGTACAGTTCCAGGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGT-TGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTG-ATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCC-AGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGGGATATTNTCAACTAGCANATTATCATCTAGACGAGAAGTGACCTGGATAGATCCTGAGTTCATTGCACTNGTGGNAGTGGNAT] [+] EMBL CD067390 [GCAGGTGGTAAATCAGGAAAGTAGATAATGATAATAATAAAGGGAAGAATAAAGGCGTAAACAAAAGAAAAGGAAGTTTTGTAGCTCATAAAACACAAGAAAATTACTACTTTTTACATACAGGTGGTTAGTGTATAAACGAATATGTTCATGTGTATGAAAAAAAGAACATATCAAGTGATTGAAATATACACCATAGATATCGTTGAACCTGTACATATTACATTAATGAAATTACGTGGGTAGTTTTTGACCGTGATTAACAGGACGTTGTTGAATACTTGATGGTGGTGGACAAGGTTCCGGACCATAATATCGTTCAACAATATAATATCGTATTTCAACCTCTGGATAGTTTTCTTTTTCTTCAACTACTGCTGGT ] [+] EMBL CD144315 [ AAGAAAATTACTACTTTTTACATACAGGTGGTTAGTGTATAAACGAATATGTTCATGTGTATGAAAAAAAGAACATATCAAGTGATTGAAATATACACCATAGATATCGTTGAACCTGTACATATTACATTAATGAAATTAGGTGGGTAGTTTTTGACCGTGATTAACAGGATGTTGTTGAATACTTGATGGTGGTGGTCGAGGTTCCGGACCATAATATCGTTCAAC ATATAATATCGTATTTCAACCTCTGGATAGTTTTCTTTTTCTTCAACTACTGCTGGNTGAAAAGAAGAACGTTTGACTGGATAATCTTTAANACAANTTGTTTGTATTGAC ] [-] EMBL CD196807 [ TGGGTAGTTTTTGACCGTGATTAACAGGACGTTGTTGAATACTTGATGGTGGTGGTCGAGGTTCCGGACCATAATATCGTTCAACAATATAATATCGTATTTCAACCTCTGGATAGTTTTCTTTTTCTTCAACTACTGCTGGTTGAAAAGAAGAACGTTTGACTGGATAATCTTTAAAACAATTTGTTGTTATTGACGTCGACAGTGGAGGCAACGGACAATTAGGTGGACTTGCAGTAGTTAGTGGCATTGTATGTTCAGGTGTAGAAAGTGTATGCGAATGACGTTTACAACCACCTGTCATAGTTGATAATAATTTATTTGGGTCGCCGCTACTGCTACTATTACTACTACAATTCCATATACGTTCAGGAGCGGTAAATACTAAATGTCCAATATCATTCACATCAACATCATTC ] [+] EMBL CD188355 [ ACTGCTACTATTACTACTACAATTCCATATACGTTCAGGAGCGGTAAATACTAAATGTCCAATATCATTCACATCAACATCATTCCCATTAATGTTGAACTGACTTAGATTTTGGATGTAATCGTTTGTTGT TGTCGCATCTTCAGACAGATCAATGTCCATTAGTGAAGATGAATCAAGATCGGATAATGAATGTGGTTCAGTAGATACAACAGGATAGTTTCTAAAGTTAGACTTATTATTATTAGTTTGAGATGTGTTTAATTTATTCTGAATTTGGGGTATGGAACCGTGTACAGTTCCAGGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAG ] [-] EMBL CD148275 [ CTATTACTACTACAATTCCATATACGTTCAGGAGCGGTAAATACTAAATGTCCAATATCATTCACATCAACATCATTCCCATTAATGTTGAACTGACTTAGATTTTGGATGTAATCGTTTGTTGT TGTCGCATCTTCAGACAGATCAATGTCCATTAGTGAAGATGAATCAAGATCGGATAATGAATGTGGTTCAGTAGATACAACAGGATAGTTTCTAAAGTTAGACTTATTATTATTAGTTTGAGATGTGTTTAATTTATTCTGAATTTGGGGTATGGAACCGTGTACAGTTCCAGGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTG ] [-] EMBL CD188263 [ CGGTAAATACTAAATGTCCAATATCATTCACATCAACATCATTCCCATTAATGTTGAACTGACTTAGATTTTGGATGTAATCGTTTGTTGT TGTCGCATCTTCAGACAGATCAATGTCCATTAGTGAAGATGAATCAAGATCGGATAATGAATGTGGTTCAGTAGATACAACAGGATAGTTTCTAAAGTTAGACTTATTATTATTAGTTTGAGATGTGTTTAATTTATTCTGAATTTGGGGTATGGAACCGTGTACAGTTCCAGGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGA ] [-] EMBL CD179908 [ TTTGGATGTAATCG TTGTTGTNNGTCGCATCTTCAGACAGATCAATGTCCATTAGTGAAGATGAATCAAGATCGGATAATGAATGTGGTTCAGTAGATACAACAGGATAGTTTCTAAAGTTAGACTTATTATTATTAGTTTGAGATGTGTTTAATTTATTCTGAATTTGGGGTATGGAACCGTGTACAGTTCCAGGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACA ] [+] EMBL CD096479 [ GGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACTTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGT TGGATTTGAAAAATCATGTGAGTTTAACGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTG ATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCC AGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGGGATATTNTCAACTAGCANATTATCATCTAGACGAGAAGTGACCTGGATAGATCCTGAGTTCATTGCACTNGTGGNAGTGGNAT] [+] EMBL CD096417 [ GGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGT TGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTG ATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCC AGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGANACATTTGGTGGGATATTCTCAACTAG ] [-] EMBL CD145213 [ CTAAGACAACAATCGGAACGTTTTTGTAAGCGTTCCAACTGGCGTCGTTTAACAGAATTAACACCACCTGATTGAGAAGATGGTGTTCCATAGGTAGCACTCTTTAATTTAGCATTAGATTCTTTACTCCCAACTGATGGAATGGATGAATCGACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATACCTGTTGTTGTCTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTCTGTGCATGTTTGCTGAATAGGAGCATTCAATATGTCCAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCCTAGATATGTAACTCT ] consensusID : consensus_10070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 555 fasta sequence [CAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGTTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTGATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCCAGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGGGATATTTTCAAC-TAGCA-AATTATCATCTAGACGAGAAGTGACCTGATTAGATCCCTGATTTCCCACCCTTGCCCAGGGTGACCG] [-] EMBL CD167821 [CAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGTTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTGATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCCAGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGGGATATTTTCAAC TAGCA AATTATCATCTAGACGAGAAGTGACCTGATTAGATCCCTGATTTCCCACCCTTGCCCAGGGTGACCG] [-] EMBL CD067091 [ ACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGTTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTGATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCCAGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGGGATATTTTCAAC TAGCA AATTATCATCTAGACGAGAAGTGAC ] [-] EMBL CD167829 [ TAGATTCTTTATTCCCAGCTGATGGAATGGATGAAACAACAGAGGGAGGTTTTAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGTTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTGATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCCAGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGGGATATTTTCAACGTAGCATAATTATCATCTAGACGAGAAGTGACCTGATTAGATCCGTGATTTCCCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10070#0 GCAGGTGGTAAATCAGGAAAGTAGATAATGATAATAATAAAGGGAAGAATAAAGGCGTAA 60 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 ACAAAAGAAAAGGAAGTTTTGTAGCTCATAAAACACAAGAAAATTACTACTTTTTACATA 120 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 CAGGTGGTTAGTGTATAAACGAATATGTTCATGTGTATGAAAAAAAGAACATATCAAGTG 180 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 ATTGAAATATACACCATAGATATCGTTGAACCTGTACATATTACATTAATGAAATTACGT 240 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 GGGTAGTTTTTGACCGTGATTAACAGGACGTTGTTGAATACTTGATGGTGGTGGTCGAGG 300 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 TTCCGGACCATAATATCGTTCAACAATATAATATCGTATTTCAACCTCTGGATAGTTTTC 360 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 TTTTTCTTCAACTACTGCTGGTTGAAAAGAAGAACGTTTGACTGGATAATCTTTAANACA 420 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 ANTTGTTTGTATTGACGTCGACAGTGGAGGCAACGGACAATTAGGTGGACTTGCAGTAGT 480 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 TAGTGGCATTGTATGTTCAGGTGTAGAAAGTGTATGCGAATGACGTTTACAACCACCTGT 540 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 CATAGTTGATAATAATTTATTTGGGTCGCCGCTACTGCTACTATTACTACTACAATTCCA 600 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 TATACGTTCAGGAGCGGTAAATACTAAATGTCCAATATCATTCACATCAACATCATTCCC 660 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 ATTAATGTTGAACTGACTTAGATTTTGGATGTAATCGTTTGTTGTTGTCGCATCTTCAGA 720 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 CAGATCAATGTCCATTAGTGAAGATGAATCAAGATCGGATAATGAATGTGGTTCAGTAGA 780 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 TACAACAGGATAGTTTCTAAAGTTAGACTTATTATTATTAGTTTGAGATGTGTTTAATTT 840 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 ATTCTGAATTTGGGGTATGGAACCGTGTACAGTTCCAGGAGTACTAGGATTCAAGTGCAT 900 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 TAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTG 960 consensus_10070#1 ------------------------------------------------------------ consensus_10070#0 TAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGT 1020 consensus_10070#1 ---------CAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGT 51 *************************************************** consensus_10070#0 TCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGA 1080 consensus_10070#1 TCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGA 111 ************************************************************ consensus_10070#0 TGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGT 1140 consensus_10070#1 TGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGT 171 ************************************************************ consensus_10070#0 TGTTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATG 1200 consensus_10070#1 TGTTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATG 231 ************************************************************ consensus_10070#0 ATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTGATGTTTGCTG 1260 consensus_10070#1 ATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTGATGTTTGCTG 291 ************************************************************ consensus_10070#0 AATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACG 1320 consensus_10070#1 AATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACG 351 ************************************************************ consensus_10070#0 TCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCC 1380 consensus_10070#1 TCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCC 411 ************************************************************ consensus_10070#0 AGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGG 1440 consensus_10070#1 AGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGG 471 ************************************************************ consensus_10070#0 GATATTNTCAACTAGCANATTATCATCTAGACGAGAAGTGACCTGGATAGATCCTGAGTT 1500 consensus_10070#1 GATATTTTCAACTAGCAAATTATCATCTAGACGAGAAGTGACCTGATTAGATCCCTGATT 531 ****** ********** *************************** ******* ** consensus_10070#0 CATTGCACTNGTGGNAGTGGNAT- 1523 consensus_10070#1 TCCCACCCTTGCCCAGGGTGACCG 555 * ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||