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Schistosoma mansoni
cluster # 10090 cluster # 10090       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10090#0 length = 1115 sequences # 10  
consensus_10090#1 length = 452 sequences # 3  

consensusID : consensus_10090#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1115
fasta sequence
                              [GGCCAANAATTTGGCACGAGGTCAGAATTCAATGTCTGGCCAACAACCACACCACCACCAACAACAGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACCTAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGTACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGATTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGAGAAAAATCCTTGTGTTGTTATTAATCATTTACAACCAATGATTAAAACATTTATTGTAACCGATGACGATATACGTCGACAAGAAGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAATTGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTGTCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGTTATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCTTGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCTATGTGTGCATGTGCATAAAAAAAAAAAAAAAAAAA]

[+] EMBL CD080696             [GGCCAANAATTTGGCACGAGGTCAGAATTCAATGTCTGGCCAACAACCACACCACCACCAACAACAGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACCTAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGTACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGATTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGAGA                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD146819             [                                                                 AGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACCTAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGTACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGATTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD129001             [                                                                     TTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACCTAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCGAATTGTACGAAATAAACAAG AACACGAAC ATTTTAGGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD083791             [                                                                                                                                                                                                AGAAATGCAAACAATTTTAGGTGATAAATAT ATATTGGTCTGTTTGATTGGAGAATGGGT AATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD115133             [                                                                                                                                                                                                                                                                            AACAACAGCGGTAGTAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATACTGCGTGTAAACCAACAGATGTAAAGAATGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD142572             [                                                                                                                                                                                                                                                                                                                                                                                                      cgaGAGAGGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTATGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGGTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTACAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD142523             [                                                                                                                                                                                                                                                                                                                                                                                                      cgaGAGAGGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTATGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGAGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD141557             [                                                                                                                                                                                                                                                                                                                                                                                                                        CCCAATAACAAATGACATTAAACCGGTTATTGTATGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACACCNTTCAGCTATTGAGAAAAATCC                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL AI976133             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGAGAAAAATCCTTGTGTTGTTATTAATCATTTACAACCAATGATTAAAACATTTATTGTAACCGATGACGATATACGTCGACAAGAAGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAATTGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTGTCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGTTATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCTTGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCTATGTG                              ]
[-] EMBL AI395717             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AATGATT AAACCTTTATTGTAACCGATGACGATATACGTCGACAAG AGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAATTGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTGTCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGTTATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCTTGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCTATGTGTGCATGTGCATAAAAAAAAAAAAAAAAAAA]


>consensus_10090#0 GGCCAANAATTTGGCACGAGGTCAGAATTCAATGTCTGGCCAACAACCACACCACCACCA ACAACAGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACC TAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGT ACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGA TTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTC GAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGT TCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAA TGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAA TACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGC TATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAG TGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATC ATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGA GAAAAATCCTTGTGTTGTTATTAATCATTTACAACCAATGATTAAAACATTTATTGTAAC CGATGACGATATACGTCGACAAGAAGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAAT TGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTG TCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGT TATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCT TGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCT ATGTGTGCATGTGCATAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10090#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 452
fasta sequence
                              [TTCAGCCAGCTTTAATTTGAAGGCCAATAGGTCTAAAAGGGTGTAAGACCCGACGGCAGACGAGTCATCAGCATGGTCGCCGACAGATAAGGTTCGGCGTGTAGATAATCAGGGCAGTTTACCAATTAGAAGGTGTCCATTCCCAATAACAAATGACATTATCTCGGTTATTGTACGTTCTCATCATGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAACTGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATGAAAGGTAATTCTAGTCGCCCTCTTTGCCTCGT]

[-] EMBL CD115128             [TTCAGCCAGCTTTAATTTGAAGGCCAATAGGTCTAAAAGGGTGTAAGACCCGACGGCAGACGAGTCATCAGCATGGTCGCCGACAGATAAGGTTCGGCGTGTAGATAATCAGGGCAGTTTACCAATTAGAAGGTGTCCATTCCCAATAACAAATGACATTATCTCGGTTATTGTACGTTCTCATCATGAGTGTAGACGAACAGATGTAAAGAATACCAATCAAGATACTCCTCATCAGTTATTTTGGAAAAGACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCGTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAGCTGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATGAAAGGTAATTCTAGTCGTCATCTTTGCCTCGT]
[-] EMBL CD115149             [                                                                                                                                                                                              TGTAAACGATCAGATGTAAAGAATACCAATCAAGTAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGTTATTGATCCGGATACTGGCGAATCTCTCAAACCCATTTCTTTGCCTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAACTGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATGAAAGGTAATTCTAGTCGCCCTCCTTGCCTCct]
[-] EMBL CD115090             [                                                                                                                                                                                                tgAACGGACAGATTTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAACTGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATGAAAGGTAATTCTAGTCGCTCTTTT        ]


>consensus_10090#1 TTCAGCCAGCTTTAATTTGAAGGCCAATAGGTCTAAAAGGGTGTAAGACCCGACGGCAGA CGAGTCATCAGCATGGTCGCCGACAGATAAGGTTCGGCGTGTAGATAATCAGGGCAGTTT ACCAATTAGAAGGTGTCCATTCCCAATAACAAATGACATTATCTCGGTTATTGTACGTTC TCATCATGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTT ATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTT CAAACCCATTTCTTTGCCTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAAC TGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATG AAAGGTAATTCTAGTCGCCCTCTTTGCCTCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10090#0      GGCCAANAATTTGGCACGAGGTCAGAATTCAATGTCTGGCCAACAACCACACCACCACCA 60
consensus_10090#1      ------------------------------------------------------------
                                                                                   

consensus_10090#0      ACAACAGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACC 120
consensus_10090#1      ------------------------------------------------------------
                                                                                   

consensus_10090#0      TAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGT 180
consensus_10090#1      ------------------------------------------------------------
                                                                                   

consensus_10090#0      ACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGA 240
consensus_10090#1      ------------------------------------------------------------
                                                                                   

consensus_10090#0      TTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTC 300
consensus_10090#1      ---------------------------TTCAGCCAGCTTTAATTTGAAGGCCAATAGGTC 33
                                                  *     ** * *****   ** ******* ***

consensus_10090#0      GAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGT 360
consensus_10090#1      TAAAAGGGTGTAAGACCCGACGGCAGACGAGTCATCAGCATGGTCGCCGACAGATAAGGT 93
                        ****** ** **** ** ** ******  *********** *** ** **** *** **

consensus_10090#0      TCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAA 420
consensus_10090#1      TCGGCGTGTAGATAATCAGGGCAGTTTACCAATTAGAAGGTGTCCATTCCCAATAACAAA 153
                       ** **************** ************* **************************

consensus_10090#0      TGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAA 480
consensus_10090#1      TGACATTATCTCGGTTATTGTACGTTCTCATCATGAGTGTAAACGAACAGATGTAAAGAA 213
                       ********   ********************* ***************************

consensus_10090#0      TACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGC 540
consensus_10090#1      TACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGC 273
                       ************************************************************

consensus_10090#0      TATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAG 600
consensus_10090#1      TATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAT 333
                       *********************************************************** 

consensus_10090#0      TGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATC 660
consensus_10090#1      ATTTGTGGT---------TCATTTTG------------ATGATGTAAC---TGTGATGT- 368
                          **  **         ***   **            **  * ***    ** * * * 

consensus_10090#0      ATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGA 720
consensus_10090#1      ---ATAATCCTGTGAG-TTTCTTAGTTATGAGGATAATAAGGGTAATATC--ATAATGAA 422
                          ** ***** * ** *****  * *    **  ** *     **  *      **  *

consensus_10090#0      GAAAAATCCTTGTGTTGTTATTAATCATTTACAACCAATGATTAAAACATTTATTGTAAC 780
consensus_10090#1      AGGTAATTCTAGTCGCCCTCTTTGCCTCGT------------------------------ 452
                           *** ** **     * **   *   *                              

consensus_10090#0      CGATGACGATATACGTCGACAAGAAGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAAT 840
consensus_10090#1      ------------------------------------------------------------
                                                                                   

consensus_10090#0      TGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTG 900
consensus_10090#1      ------------------------------------------------------------
                                                                                   

consensus_10090#0      TCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGT 960
consensus_10090#1      ------------------------------------------------------------
                                                                                   

consensus_10090#0      TATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCT 1020
consensus_10090#1      ------------------------------------------------------------
                                                                                   

consensus_10090#0      TGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCT 1080
consensus_10090#1      ------------------------------------------------------------
                                                                                   

consensus_10090#0      ATGTGTGCATGTGCATAAAAAAAAAAAAAAAAAAA 1115
consensus_10090#1      -----------------------------------
                                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)