These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 809 fasta sequence [CCTCGNAGGCCAANAATTCGGCACGAGGATGTATGGGAATTTCGCTGCAGCAGCACAGTTTTATGTATTTGTTGGTGTCTTAACTATGCTTTTCTGCGTTGCTATGGGCGTCTATTATGTCTATTTCCATGATCGTTACTTTGCTGACTCGCGCTTTAGTAAATACGAATTCATCTTCTCGATTGTCATTGTCCTGTTATGGTTTATCGCCTCTTGTGCATGGGCCGATAATGTAAACCAGTTTAAAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACCTAATATGCATTGCGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC-A-C-CCATA-TGTTGTTTTCTCA-TTTAAACCGAAACTAACAAACGAAATAGTGCA-TTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA-TTATATCGATAATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTTTATCATATTATTCTTT-CTAAATACACTAT] [+] EMBL CD080170 [CCTCGNAGGCCAANAATTCGGCACGAGGATGTATGGGAATTTCGCTGCAGCAGCACAGTTTTATGTATTTGTTGGTGTCTTAACTATGCTTTTCTGCGTTGCTATGGGCGTCTATTATGTCTATTTCCATGATCGTTACTTTGCTGACTCGCGCTTTAGTAAATACGAATTCATCTTCTCGATTGTCATTGTCCTGTTATGGTTTATCGCCTCTTGTGCATGGGCCGATAATGTAAACCAGTTTAAAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACCTAATATGCATTGCGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCATANTGTTGTTTTCTCA TTTAAACCGAAACTAACAAACGAAATAGTGCANTTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA TTATATCGATAA ] [-] EMBL CD074360 [ AGTTTANAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACNTAATATGCATTGCGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCATA TGTTGTTTTCTCA TTTAAACCGAAACTAACAAACGAAATAGTGCA TTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA TTATATCGATAATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTTTATCATATTATTCTTT CTAAATACACTAT] [+] EMBL CD063161 [ GCGTTTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAAAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCAT ] [+] EMBL CD063173 [ GCGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAAAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCAT ] [-] EMBL CD126256 [ CGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTA TTCC A CACCATA TGTT ] [-] EMBL CD063123 [ CGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC ACC CCATA T ] [-] EMBL CD063038 [ CGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCCAA C CCATA TGTTGTTTT ] [-] EMBL SMW738 [ ATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCATA TGTTGTTTTCTCA TTTAAACCGAAACTAACAAACGAAATAGTGCA TTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA TTATATCGATAATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTTTATCATATTATTCTTTACTAAATACACTAT] [+] EMBL AA791324 [ ATCATCTACATTATTTTGTGTGATGATAATGAGAAAAA NNACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCATA TGTTGTTTTCTCATTTTAAACCGAAACTAACAAACGAAATAGTGCA TTTTGTTTGTTTCATTATGATAAGATTACTGCTT CATTCTTAAATTGTTCACGACTTATATCGATAATTGTGCTACAG ] [-] EMBL SMW809 [ TTCC A C CCATA TGTTG TTTCTCA TTTAAACCGAAACTAACAAACGAAATAGTGCA TTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA TTATATCGATAATTGTGCTANAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTTTATCATATTATTCTTT CTAAATACACTAT] consensusID : consensus_10099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 437 fasta sequence [CTCGAGGGCCANAATTCGGCACGAGGCGCGCGTTCCAGTTTTGTGTTGCACGATTTAGCTCTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATACTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTTTTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGCAACAACGTGTGACTTCTNCACCNNAGTGNAAAGCTAAAGTATGTCTGTCAGGGTAACGGGTCATATACAAATTGGGGTGCCAAATTTACATACCCCTTCAATATTGACTCCATCGTGCTTCCTCAATGCAATGCTGCGGAGAGTAAACACATGTATGGGAATTTCGCTGCAGCAGCACAGTTNTATGTATNTGTTGGTGTCTTAACTATGCTTT] [+] EMBL CD080448 [CTCGAGGGCCANAATTCGGCACGAGGCGCGCGTTCCAGTTTTGTGTTGCACGATTTAGCTCTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATACTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTTTTATTAAAGTTATTGAAGTTCTCATAGCATTCTGTGTCTTGCCAATANNGTGT CTNNTNCACCNNAGTGNAAAGCTAAAGTATGTCTGTCAGGGTAACGGGTCATATACAAATTGGGGTGCCAAATTTACATACCCCTTCAATATTGACTCCATCGTGCTTCCTCAATGCAATGCTGCGGAGAGTAAACACATGTATGGGAATTTCGCTGCAGCAGCACAGTTNTATGTATNTGTTGGTGTCTTAACT ] [+] EMBL CD121011 [ GCGCGTTCCAGTTTTGTGTTGCACGATTTAG TCTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATACTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTTTTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGCAACAACGTGTGACTTCT ] [+] EMBL SMW818 [ TTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATACTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTTTTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGCAACAACGTGTGACTTCTCGACC AGTGTCAAGCTAAAGTATGTCTGTCAGGGTAACGGGTCATATACAAATTGGGGTGCCAAATTTACATACCCCTTCAATATTGACTCCATCGTGCTTCCTCAATGCAATGCTGCGGAGAGTAAACACATGTATGGGAATTTCGCTGCAGCAGCACAGTTTTATGTATTTGTTGGTGTCTTAACTATGCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10099#0 CCTCGNAGGCCAANAATTCGGCACGAGG-ATGTATGGGAATTTCGCTGCAGCAGCACAGT 59 consensus_10099#1 -CTCGAGGGCCANAA-TTCGGCACGAGGCGCGCGTTCCAGTTTTGT----GTTGCACGAT 54 **** ***** * ************ * * * *** * * **** * consensus_10099#0 TTTATGTATTTGTTGGTGTCTT-AACTATGCTTT-TCTGCGTTGCTATGGGCGTCTATTA 117 consensus_10099#1 TTAGCTCTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAA 114 ** * * * ** ** ** ** * * * * ** * * consensus_10099#0 TGTCTATTTCCATGATCGTTACTTTGCTGACTCGCGCTTTAGTAAATACGAATTCATCTT 177 consensus_10099#1 CAAATACTTGGGAGATGATAGAATCGTCGTCTT-CAGGATGGGAAGTTTTCAAAGAGCCC 173 ** ** *** * * * * ** * * * ** * * * * consensus_10099#0 CTCGATTGTCATTGTCCTGTTATGGTT--TATCGCCTCTTGTGCATGGGCCGATAATGTA 235 consensus_10099#1 AAAGGTTTTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGC-AACAACGTG 232 * ** * * * ** *** *** ** ******* ** * ** ** consensus_10099#0 AACCAGTTTAAAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACCTAATATG 295 consensus_10099#1 TGACTTCTNCACCNNAGTGNAAAGCTAAAGTATGTCTGT--CAGGGTAACGGGTCATATA 290 * * * *** **** *** * * **** consensus_10099#0 CATTGCGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGG 355 consensus_10099#1 CAAATTGGGGTGCCAAATTTACATACCCCTTCAATATTGACTCCATCGT---------GC 341 ** * * ** * * **** * * * * * ** * consensus_10099#0 TTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGG 415 consensus_10099#1 TTCCTCAATGCAATGCTGCGGAGAGTAAA---------CACATGTATGGGAATTTCGCTG 392 ** **** ** ** ** ** *** * * ** * * * consensus_10099#0 TCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAA 475 consensus_10099#1 CAGCAGCACAGTTNTATGTATNTGTTGGTGTCT-TAACTA-TGCTTT------------- 437 * * ** * * * * * * *** **** consensus_10099#0 ATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTAC 535 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 ATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGT 595 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 TATTTCCACCCATATGTTGTTTTCTCATTTAAACCGAAACTAACAAACGAAATAGTGCAT 655 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 TTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGATTATAT 715 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 CGATAATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCA 775 consensus_10099#1 ------------------------------------------------------------ consensus_10099#0 TTTTTTATCATATTATTCTTTCTAAATACACTAT 809 consensus_10099#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||