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Schistosoma mansoni
cluster # 10099 cluster # 10099       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10099#0 length = 809 sequences # 10  
consensus_10099#1 length = 437 sequences # 3  

consensusID : consensus_10099#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 809
fasta sequence
                              [CCTCGNAGGCCAANAATTCGGCACGAGGATGTATGGGAATTTCGCTGCAGCAGCACAGTTTTATGTATTTGTTGGTGTCTTAACTATGCTTTTCTGCGTTGCTATGGGCGTCTATTATGTCTATTTCCATGATCGTTACTTTGCTGACTCGCGCTTTAGTAAATACGAATTCATCTTCTCGATTGTCATTGTCCTGTTATGGTTTATCGCCTCTTGTGCATGGGCCGATAATGTAAACCAGTTTAAAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACCTAATATGCATTGCGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC-A-C-CCATA-TGTTGTTTTCTCA-TTTAAACCGAAACTAACAAACGAAATAGTGCA-TTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA-TTATATCGATAATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTTTATCATATTATTCTTT-CTAAATACACTAT]

[+] EMBL CD080170             [CCTCGNAGGCCAANAATTCGGCACGAGGATGTATGGGAATTTCGCTGCAGCAGCACAGTTTTATGTATTTGTTGGTGTCTTAACTATGCTTTTCTGCGTTGCTATGGGCGTCTATTATGTCTATTTCCATGATCGTTACTTTGCTGACTCGCGCTTTAGTAAATACGAATTCATCTTCTCGATTGTCATTGTCCTGTTATGGTTTATCGCCTCTTGTGCATGGGCCGATAATGTAAACCAGTTTAAAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACCTAATATGCATTGCGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCATANTGTTGTTTTCTCA TTTAAACCGAAACTAACAAACGAAATAGTGCANTTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA TTATATCGATAA                                                                                         ]
[-] EMBL CD074360             [                                                                                                                                                                                                                                               AGTTTANAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACNTAATATGCATTGCGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCATA TGTTGTTTTCTCA TTTAAACCGAAACTAACAAACGAAATAGTGCA TTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA TTATATCGATAATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTTTATCATATTATTCTTT CTAAATACACTAT]
[+] EMBL CD063161             [                                                                                                                                                                                                                                                                                                                                                 GCGTTTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAAAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCAT                                                                                                                                                                                                              ]
[+] EMBL CD063173             [                                                                                                                                                                                                                                                                                                                                                 GCGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAAAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCAT                                                                                                                                                                                                              ]
[-] EMBL CD126256             [                                                                                                                                                                                                                                                                                                                                                  CGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTA TTCC A CACCATA TGTT                                                                                                                                                                                                        ]
[-] EMBL CD063123             [                                                                                                                                                                                                                                                                                                                                                  CGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC ACC CCATA T                                                                                                                                                                                                           ]
[-] EMBL CD063038             [                                                                                                                                                                                                                                                                                                                                                  CGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCCAA C CCATA TGTTGTTTT                                                                                                                                                                                                   ]
[-] EMBL SMW738               [                                                                                                                                                                                                                                                                                                                                                                                                   ATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCATA TGTTGTTTTCTCA TTTAAACCGAAACTAACAAACGAAATAGTGCA TTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA TTATATCGATAATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTTTATCATATTATTCTTTACTAAATACACTAT]
[+] EMBL AA791324             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATCATCTACATTATTTTGTGTGATGATAATGAGAAAAA NNACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCATA TGTTGTTTTCTCATTTTAAACCGAAACTAACAAACGAAATAGTGCA TTTTGTTTGTTTCATTATGATAAGATTACTGCTT CATTCTTAAATTGTTCACGACTTATATCGATAATTGTGCTACAG                                                                              ]
[-] EMBL SMW809               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTCC A C CCATA TGTTG TTTCTCA TTTAAACCGAAACTAACAAACGAAATAGTGCA TTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA TTATATCGATAATTGTGCTANAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTTTATCATATTATTCTTT CTAAATACACTAT]


>consensus_10099#0 CCTCGNAGGCCAANAATTCGGCACGAGGATGTATGGGAATTTCGCTGCAGCAGCACAGTT TTATGTATTTGTTGGTGTCTTAACTATGCTTTTCTGCGTTGCTATGGGCGTCTATTATGT CTATTTCCATGATCGTTACTTTGCTGACTCGCGCTTTAGTAAATACGAATTCATCTTCTC GATTGTCATTGTCCTGTTATGGTTTATCGCCTCTTGTGCATGGGCCGATAATGTAAACCA GTTTAAAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACCTAATATGCATTG CGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGGTTTAC TAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGG AAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTA GTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTAT TTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTT CCACCCATATGTTGTTTTCTCATTTAAACCGAAACTAACAAACGAAATAGTGCATTTTGT TTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGATTATATCGATA ATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTT TATCATATTATTCTTTCTAAATACACTAT



consensusID : consensus_10099#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 437
fasta sequence
                              [CTCGAGGGCCANAATTCGGCACGAGGCGCGCGTTCCAGTTTTGTGTTGCACGATTTAGCTCTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATACTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTTTTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGCAACAACGTGTGACTTCTNCACCNNAGTGNAAAGCTAAAGTATGTCTGTCAGGGTAACGGGTCATATACAAATTGGGGTGCCAAATTTACATACCCCTTCAATATTGACTCCATCGTGCTTCCTCAATGCAATGCTGCGGAGAGTAAACACATGTATGGGAATTTCGCTGCAGCAGCACAGTTNTATGTATNTGTTGGTGTCTTAACTATGCTTT]

[+] EMBL CD080448             [CTCGAGGGCCANAATTCGGCACGAGGCGCGCGTTCCAGTTTTGTGTTGCACGATTTAGCTCTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATACTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTTTTATTAAAGTTATTGAAGTTCTCATAGCATTCTGTGTCTTGCCAATANNGTGT  CTNNTNCACCNNAGTGNAAAGCTAAAGTATGTCTGTCAGGGTAACGGGTCATATACAAATTGGGGTGCCAAATTTACATACCCCTTCAATATTGACTCCATCGTGCTTCCTCAATGCAATGCTGCGGAGAGTAAACACATGTATGGGAATTTCGCTGCAGCAGCACAGTTNTATGTATNTGTTGGTGTCTTAACT       ]
[+] EMBL CD121011             [                           GCGCGTTCCAGTTTTGTGTTGCACGATTTAG TCTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATACTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTTTTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGCAACAACGTGTGACTTCT                                                                                                                                                                                                     ]
[+] EMBL SMW818               [                                                             TTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATACTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTTTTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGCAACAACGTGTGACTTCTCGACC  AGTGTCAAGCTAAAGTATGTCTGTCAGGGTAACGGGTCATATACAAATTGGGGTGCCAAATTTACATACCCCTTCAATATTGACTCCATCGTGCTTCCTCAATGCAATGCTGCGGAGAGTAAACACATGTATGGGAATTTCGCTGCAGCAGCACAGTTTTATGTATTTGTTGGTGTCTTAACTATGCTTT]


>consensus_10099#1 CTCGAGGGCCANAATTCGGCACGAGGCGCGCGTTCCAGTTTTGTGTTGCACGATTTAGCT CTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATA CTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTT TTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGCAACAACGTGTGACTTCT NCACCNNAGTGNAAAGCTAAAGTATGTCTGTCAGGGTAACGGGTCATATACAAATTGGGG TGCCAAATTTACATACCCCTTCAATATTGACTCCATCGTGCTTCCTCAATGCAATGCTGC GGAGAGTAAACACATGTATGGGAATTTCGCTGCAGCAGCACAGTTNTATGTATNTGTTGG TGTCTTAACTATGCTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10099#0      CCTCGNAGGCCAANAATTCGGCACGAGG-ATGTATGGGAATTTCGCTGCAGCAGCACAGT 59
consensus_10099#1      -CTCGAGGGCCANAA-TTCGGCACGAGGCGCGCGTTCCAGTTTTGT----GTTGCACGAT 54
                        ****  *****  * ************   *  *   * *** *     *  ****  *

consensus_10099#0      TTTATGTATTTGTTGGTGTCTT-AACTATGCTTT-TCTGCGTTGCTATGGGCGTCTATTA 117
consensus_10099#1      TTAGCTCTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAA 114
                       **      * *     *   ** ** **  ** *  *  *  *   **         * *

consensus_10099#0      TGTCTATTTCCATGATCGTTACTTTGCTGACTCGCGCTTTAGTAAATACGAATTCATCTT 177
consensus_10099#1      CAAATACTTGGGAGATGATAGAATCGTCGTCTT-CAGGATGGGAAGTTTTCAAAGAGCCC 173
                           ** **    ***  *    * *  * **  *    * * ** *    *   * *  

consensus_10099#0      CTCGATTGTCATTGTCCTGTTATGGTT--TATCGCCTCTTGTGCATGGGCCGATAATGTA 235
consensus_10099#1      AAAGGTTTTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGC-AACAACGTG 232
                          * ** *  *     * **   ***  *** **    *******  **  * ** ** 

consensus_10099#0      AACCAGTTTAAAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACCTAATATG 295
consensus_10099#1      TGACTTCTNCACCNNAGTGNAAAGCTAAAGTATGTCTGT--CAGGGTAACGGGTCATATA 290
                          *   *  *              ***      ****      *** *    * **** 

consensus_10099#0      CATTGCGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGG 355
consensus_10099#1      CAAATTGGGGTGCCAAATTTACATACCCCTTCAATATTGACTCCATCGT---------GC 341
                       **    *  *   ** *   *  ****  *     * * *   * **           * 

consensus_10099#0      TTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGG 415
consensus_10099#1      TTCCTCAATGCAATGCTGCGGAGAGTAAA---------CACATGTATGGGAATTTCGCTG 392
                       **    ****     **  **  **             ** *** *  * ** * *   *

consensus_10099#0      TCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAA 475
consensus_10099#1      CAGCAGCACAGTTNTATGTATNTGTTGGTGTCT-TAACTA-TGCTTT------------- 437
                              * * ** * *   *      *    * *  *** ****               

consensus_10099#0      ATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTAC 535
consensus_10099#1      ------------------------------------------------------------
                                                                                   

consensus_10099#0      ATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGT 595
consensus_10099#1      ------------------------------------------------------------
                                                                                   

consensus_10099#0      TATTTCCACCCATATGTTGTTTTCTCATTTAAACCGAAACTAACAAACGAAATAGTGCAT 655
consensus_10099#1      ------------------------------------------------------------
                                                                                   

consensus_10099#0      TTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGATTATAT 715
consensus_10099#1      ------------------------------------------------------------
                                                                                   

consensus_10099#0      CGATAATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCA 775
consensus_10099#1      ------------------------------------------------------------
                                                                                   

consensus_10099#0      TTTTTTATCATATTATTCTTTCTAAATACACTAT 809
consensus_10099#1      ----------------------------------
                                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)