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Schistosoma mansoni
cluster # 10103 cluster # 10103       Sequences # 13       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10103#0 length = 924 sequences # 3  
consensus_10103#1 length = 826 sequences # 4  
consensus_10103#2 length = 795 sequences # 2  
consensus_10103#3 length = 628 sequences # 2  
consensus_10103#4 length = 334 sequences # 2  

consensusID : consensus_10103#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 924
fasta sequence
                              [AGGTGGTGGCCCAAGCGGGATCCCTATTATTTAAAAAGTTAGCCACTGTATCCATCAACCAGCCTCTATAATATGTATTTCCAAGTTCGAATATCCAAGATATCCCCAGAACTAAGCCTCAGGAAAGGGGCACGAAAAATATGATTGATGGCTACAAAAGCTGCCCCAAACATAACAGCGTCAAACAAATAGATAGCACTCTTAGTAATATGAGCGATCACTAGACGTTGAGAACTTTGGCTGAAACAAT-CCAAACGTCAACAGGAAAATAAAAGGTGATTGGTGATAAAGATTCACCGGAGAATTAATAGCAACCAAAACAGGAAAACCAAGTGCAAGTGTAAGAGGGCAAACTGGAAATAGTACACTAGTATTAGCAACGGTTGTCCCGTATTTACCACAACCACCTTGAGAAATAGTATCAGCAAACTGAACTGCCAGAAGAAACATGACAATTGAGAACACGAGGAACTGAACAACCTTGAGTTCCAAACCGAAAAGTGGATCTTTCATGCTCCAAATAGAGTGACCAAATATTGAAGATATCGTCCCAAATAAAATTCCAATTAAGAGTACCTCTGTCACTCCGACCCGGTCAAAGGCAAGAACTCCCGTGACATAACATCGCCAATGGGCTACATAAAAATAAGCTTGGATACAGAAGTATTGAATGAACATCAACATAGGCCAGTCATCCAAACCAATGACGATGAAATAACTTATGGNGAGGATACATGTGGATAAAGCATCACAACCATGGTCAAACAGTTCACCAAGCTGAGAACAAGACCCTGTACGGCGAGCTTGCAAGCCATCTAGGGCATCTAAAGTTTGGTACGCGAATACACACACTACCAACACCACCGAAGTAAAGGAACCAGCCCCCATAGAACAACAGCCAACACAAAGGCAATCACTTTGGCG]

[-] EMBL CD077638             [AGGTGGTGGCCCAAGCGGGATCCCTATTATTTAAAAAGTTAGCCACTGTATCCATCAACCAGCCTCTATAATATGTATTTCCAAGTTCGAATATCCAAGATATCCCCAGAACTAAGCCTCAGGAAAGGGGCACGAAAAATATGATTGATGGCTACAAAAGCTGCCCCAAACATAACAGCGTCAAACAAATAGATAGCACTCTTAGTAATATGAGCGATCACTAGACGTTGAGAACTTTGGCTGAAACAAT CCAAACGTCAACAGGAAAATAAAAGGTGATTGGTGATAAAGATTCACCGGAGAATTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD154253             [                                                                                                                                                                                                                                             TGGCTGAAACAATCCCAAACGTCAACAGGAAAATAAAAGGTGATTGGTGATAAAGATTCACCGGAGAATTAATAGCAACCAAAACAGGAAAACCAAGTGCAAGTGTAAGAGGGCAAACTGGAAATAGTACACTAGTATTAGCAACGGTTGTCCCGTATTTACCACAACCACCTTGAGAAATAGTATCAGCAAACTGAACTGCCAGAAGAAACATGACAATTGAGAACACGAGGAACTGAACAACCTTGAGTTCCAAACCGAAAAGTGGATCTTTCATGCTCCAAATAGAGTGACCAAATATTGAAGATATCGTCCCAAATAAAATTCCAATTAAGAGTACCTCTGTCACTCCGACCCGGTCAAAGGCAAGAACTCCCGTGACATAACATCGCCAATGGGCTACATAAAAATAAGCTTGGATACAGAAGTATTGAATGAACATCAACATAGGCCAGTCATCCAAACCAATGACGATGAAATAACTTATGGNGAGGATACATGTGGATAAAGCATCACAACCATGGTCAAACAGTTCACCAAGCTGAGAACAAGACCCTGTACGGCGAGCTTGCAAGCCATCTAGGGCATCTAAAGTTTGGTACGCGAATACACACACTACCAACACCACCGAAGTAAAGGAACCAGCCCCCATAGAACAACAGCCAACACAAAGGCAATCACTTTGGCG]
[-] EMBL CD113259             [                                                                                                                                                                                                                                                                                                                         AACCAAAACAGGAAAACCAAGTGCAAGTGTAAGAGGGCAAACTGGAAATAGTACACTAGTATTAGCAACGGTTGTCCCGTATTTACCACAACCACCTTGAGAAATAGTATCAGCAAACTGAACTGCCAGAAGAAACATGACAATTGAGAACACGAGGAACTGAACAACCTTGAGTTCCAAACCGAAAAGTGGATCTTTCATGCTCCAAATAGAGTGACCAAATATTGAAGATATCGTCCCAAATAAAATTCCAATTAAGAGTA                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_10103#0 AGGTGGTGGCCCAAGCGGGATCCCTATTATTTAAAAAGTTAGCCACTGTATCCATCAACC AGCCTCTATAATATGTATTTCCAAGTTCGAATATCCAAGATATCCCCAGAACTAAGCCTC AGGAAAGGGGCACGAAAAATATGATTGATGGCTACAAAAGCTGCCCCAAACATAACAGCG TCAAACAAATAGATAGCACTCTTAGTAATATGAGCGATCACTAGACGTTGAGAACTTTGG CTGAAACAATCCAAACGTCAACAGGAAAATAAAAGGTGATTGGTGATAAAGATTCACCGG AGAATTAATAGCAACCAAAACAGGAAAACCAAGTGCAAGTGTAAGAGGGCAAACTGGAAA TAGTACACTAGTATTAGCAACGGTTGTCCCGTATTTACCACAACCACCTTGAGAAATAGT ATCAGCAAACTGAACTGCCAGAAGAAACATGACAATTGAGAACACGAGGAACTGAACAAC CTTGAGTTCCAAACCGAAAAGTGGATCTTTCATGCTCCAAATAGAGTGACCAAATATTGA AGATATCGTCCCAAATAAAATTCCAATTAAGAGTACCTCTGTCACTCCGACCCGGTCAAA GGCAAGAACTCCCGTGACATAACATCGCCAATGGGCTACATAAAAATAAGCTTGGATACA GAAGTATTGAATGAACATCAACATAGGCCAGTCATCCAAACCAATGACGATGAAATAACT TATGGNGAGGATACATGTGGATAAAGCATCACAACCATGGTCAAACAGTTCACCAAGCTG AGAACAAGACCCTGTACGGCGAGCTTGCAAGCCATCTAGGGCATCTAAAGTTTGGTACGC GAATACACACACTACCAACACCACCGAAGTAAAGGAACCAGCCCCCATAGAACAACAGCC AACACAAAGGCAATCACTTTGGCG



consensusID : consensus_10103#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 826
fasta sequence
                              [CCTTTAATTCGGCACGCAGGGAGTTAACAAATTTTTTTATCAGGTACTTTGTATTTCTCTTTTCCCCAAAATTTACCATTGGTACACATGAATGTATACATTACAAAATTATATACAAAGAACTTTCACTTAATTTTGACTCATTGGAATATATATATATATATATATCCCTTTTTGTGTATACAATAAGAAGTAATCGGAATCTCAGTTTTGTTCATTATTCTTAGAACATCATAATCCACAAAATGATTGAATTGAGAATCCGTTTCGTTTTCGGCTGTACAAAAGTTTTTATTTAT-CGGTTCATTAAGTCCACGTAA-TTGCAATTTCCCATGCTCATGATACGTAT-AAGTTTTTTCTTTACAATGGAGTGCATAATTTCCACCTATTTATACTTTCTGTTTATCCTTCCCTTATTCTTATGGTGTTTTTCTTTGCTATTTACTTTCCTTGTGTTTTACGCGCCATTTGTACCAGTCAAACTAGCTTATTTTTATAATAATTTATTTATTTATTTCTCTTAAAATAAAGATCCACATTTACGATTATCTTCTGTGTTTCCCATTTGTCTTACGATTGTGTTATATATGTGTATACATCAAATCCATTCTAAATCCCTGTTAAAATGAAAAAAGATATAACATACTCCTGGTTTTCTTTATAAATACCAGGTGTCAATCTATGTATCTTCCTGTTTTGAATTTTTGTATGTATTTGTGGGCATTGTTGATTATTGTACTCTTTTTCTTAGATATTTCCCATATCATGATTTACTTTTATTGTCTGTAGAGTTTTTTTGTATTAGAATTTTGCCAAATAGATGTGC]

[+] EMBL CD081642             [CCTTTAATTCGGCACGCAGGGAGTTAACAAATTTTTTTATCAGGTACTTTGTATTTCTCTTTTCCCCAAAATTTACCATTGGTACACATGAATGTATACATTACAAAATTATATACAAAGAACTTTCACTTAATTTTGACTCATTGGAATATATATATATATATATATCCCTTTTTGTGTATACAATAAGAAGTAATCGGAATCTCAGTTTTGTTCATTATTCTTAGAACATCATAATCCACAAAATGATTGAATTGAGAATCCGTTTCGTTTTCGGCTGTACAAAAGTTTTTATTTATGCGGTTCATTAAGTCCACGTAATTTGCAATTTCCCATGCTCATGATACGTATGAAGTTTTTTCTTTACAATGGAGTGCATAATTTCCACCTATTTATACTTTCTGTTTATCCTTCCCTTATTCTTATGGTGTTTTTCTTTGCTATTTACTTTCCTTGTGTTTTACGCGCCATTTGTACCAGTCAAACTAGCTTATTTTTATAATAATTTATTTATTTATTTCTCTTAAAATAAAGATCCACATTTACGATTATCTTCTGTGTTTCCCATTTGTCTTACGATTGTGTTATATATGTGTATACATCAAATCCATTCTAAATCCCTGTTAAAATGAAAAAAGATATAACATACTCCTGGTTTTCTTTATAAATACCAGGTGTCAATCTATGTATCTTCCTGTTTTGAATTTTTGTATGTATTTGTGGGCATTGTTGATTATTGTACTCTNTTTCTTAGATATTTCCCATATCATGATTTACTTTTATTGTCTGTAGAGTTTTTTTGTATTAGAATTTTGCC AATAGATGTG ]
[-] EMBL CD075463             [                                                                                                                                                                                                                                                                 taAATCCGTTT GTTTTC GCTGT CAAAAGTTTTTATTTAT CGGTTCATTAAGTCCACGTAA TTGCAATTTCCCATGCTCATGATACGTAT AAGTTTTTTCTTTACAATGGAGTGCATAATTTCCACCTATTTATACTTTCTGTTTATCCTTCCCTTATTCTTATGGTGTTTTTCTTTGCTATTTACTTTCCTTGTGTTTTACGCGCCATTTGTACCAGTCAAACTAGCTTATTTTTATAATAATTTATTTATTTATTTCTCTTAAAATAAAGATCCACATTTACGATTATCTTCTGTGTTTCCCATTTGTCTTACGATTGTGTTATATATGTGTATACATCAAATCCATTCTAAATCCCTGTTAAAATGAAAAAAGATATAACATACTCCTGGTTTTCTTTATAAATACCAGGTGTCAATCTATGTATCTTCCTGTTTTGAATTTTTGTATGTATTTGTGGGCATTGTTGATTATTGTACTCTTTTTCTTAGATATTTCCCATATCATGATTTACTTTTATTGTCTGTAGAGTTTTTTTGTATTAGAATTTTGCCAAATAGATGTGC]
[-] EMBL CD076238             [                                                                                                                                                                                                                                                                                    GCTG AC  AAG TTTTA TTAT CGGTTCATT AGTCCACGTAA TTGCAATTTCCCATGCTCATGATACGTAT AAG TTTTTCTTTACAATGGAGTGCATAATTTCCACCTATTTATACTTTCTGTTTATCCTTCCCTTATTCTTATGGTGTTTTTCTTTGCTATTTACTTTCCTTGTGTTTTACGCGCCATTTGTACCAGTCAAACTAGCTTATTTTTATAATAATTTATTTATTTATTTCTCTTAAAATAAAGATCCACATTTACGATTATCTTCTGTGTTTCCCATTTGTCTTACGATTGTGTTATATATGTGTATACATCAAATCCATTCTAAATCCCTGTTAAAATGAAAAAAGATATAACATACTCCTGGTTTTCTTTATAAATACCAGGTGTCAATCTATGTATCTTCCTGTTTTGAATTTTTGTATGTATTTGTGGGCATTGTTGATTATTGTACTCTTTTTCTTAGATATTTCCCATATCATGATTTACTTTTATTGTCTGTAGAGTTTTTTTGTATTAGAGTTTTGCCAAATAGATGTGC]
[-] EMBL CD135347             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TATCTTCTGTGTTTCCCATTTGTCTGGCGATTGTGTTATATATGTGTATACATCAAATCCATTCTAAATCCCTGTTAAAATGAAAAAAGATATAACATACTCCTGGTTTTCTTTATAAATACCAGGTGTCAATCTATGTATCTTCCTGTTTTGAATTTTTGTATGTATTTGTGGGCATTGTTGATTATTGTACTCTTTTTCTTAGATATTTCCCATATCATGATTTACTTTTATTGTCTGTAGAaa                                  ]


>consensus_10103#1 CCTTTAATTCGGCACGCAGGGAGTTAACAAATTTTTTTATCAGGTACTTTGTATTTCTCT TTTCCCCAAAATTTACCATTGGTACACATGAATGTATACATTACAAAATTATATACAAAG AACTTTCACTTAATTTTGACTCATTGGAATATATATATATATATATATCCCTTTTTGTGT ATACAATAAGAAGTAATCGGAATCTCAGTTTTGTTCATTATTCTTAGAACATCATAATCC ACAAAATGATTGAATTGAGAATCCGTTTCGTTTTCGGCTGTACAAAAGTTTTTATTTATC GGTTCATTAAGTCCACGTAATTGCAATTTCCCATGCTCATGATACGTATAAGTTTTTTCT TTACAATGGAGTGCATAATTTCCACCTATTTATACTTTCTGTTTATCCTTCCCTTATTCT TATGGTGTTTTTCTTTGCTATTTACTTTCCTTGTGTTTTACGCGCCATTTGTACCAGTCA AACTAGCTTATTTTTATAATAATTTATTTATTTATTTCTCTTAAAATAAAGATCCACATT TACGATTATCTTCTGTGTTTCCCATTTGTCTTACGATTGTGTTATATATGTGTATACATC AAATCCATTCTAAATCCCTGTTAAAATGAAAAAAGATATAACATACTCCTGGTTTTCTTT ATAAATACCAGGTGTCAATCTATGTATCTTCCTGTTTTGAATTTTTGTATGTATTTGTGG GCATTGTTGATTATTGTACTCTTTTTCTTAGATATTTCCCATATCATGATTTACTTTTAT TGTCTGTAGAGTTTTTTTGTATTAGAATTTTGCCAAATAGATGTGC



consensusID : consensus_10103#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 795
fasta sequence
                              [TTATGCACTCCATGTAAAAGAAAAAACTTCATACGTANTCATGAGCATGGGAAATTGCAAATTACGTGGACTTAATGAACCGCATAAATAAAAACTTTTGTACAGCCGAAAACGAAACGGATTCTCAATTCAATCATTTTGTGGATTATGATGTTCTAAGAATAATGAACAAAACTGAGATTCCGATTACTTCTTATTGTATACACAAAAAGGGATATATATATATATATATATTCCAATGAGTCAAAATTAAGTGAAAGTTCTTTGTATATAATTTTGTAATGTATACATTCATGTGTACCAATGGTAAATTTTGGGGAAAAGAGAAATACAAAGTACCTGATAAAAAAATTTGTTAACTATTATCAATTACGAGAACTGTTTCGTATACGAAGTGAATTTTTGTAAGTGTTATCTTGAACTGACTTTTTTACGGGTGTATTTTTATTATTGTGACGCGTAGATGGTGGTCGACCAATGCGGAATACATATATATTAAGAAAGATAGCCAACTGTATACATACATCAGCATCATATAATATGATATTCACAGTTCCGAATATCAAAGATATCCACAGAACTAAGACTTCAGGAAAGGGACACGAAAAATATTGATTGATGACTAACAAAGCTGCCCCAAACATAACAGCGTCAAACAAATAAATAGCACTTTTAGTAATATGAGCGATCACTAGACGTTGAGAAACTTTGGCTGAAACAATCCCAAACGTCAACAGGAAAATAAAAGGTGATTGGTGATAAAGATTCACCCCTCGTGCCGAATTNTTGGCTCGA]

[-] EMBL CD080033             [TTATGCACTCCATGTAAAAGAAAAAACTTCATACGTANTCATGAGCATGGGAAATTGCAAATTACGTGGACTTAATGAACCGCATAAATAAAAACTTTTGTACAGCCGAAAACGAAACGGATTCTCAATTCAATCATTTTGTGGATTATGATGTTCTAAGAATAATGAACAAAACTGAGATTCCGATTACTTCTTATTGTATACACAAAAAGGGATATATATATATATATATATTCCAATGAGTCAAAATTAAGTGAAAGTTCTTTGTATATAATTTTGTAATGTATACATTCATGTGTACCAATGGTAAATTTTGGGGAAAAGAGAAATACAAAGTACCTGATAAAAAAATTTGTTAACTATTATCAATTACGAGAACTGTTTCGTATACGAAGTGAATTTTTGTAAGTGTTATCTTGAACTGACTTTTTTACGGGTGTATTTTTATTATTGTGACGCGTAGATGGTGGTCGACCAATGCGGAATACATATATATTAAGAAAGATAGCCAACTGTATACATACATCAGCATCATATAATATGATATTCACAGTTCCGAATATCAAAGATATCCACAGAACTAAGACTTCAGGAAAGGGACACGAAAAATATTGATTGATGACTAACAAAGCTGCCCCAAACATAACAGCGTCAAACAAATAAATAGCACTTTTAGTAATATGAGCGATCA                                                                                                        ]
[-] EMBL CD082640             [                                                                                                          CGAAAACGAAACGGATTCTCAATTCAATCATTNTGTGGATTATGATGTTCTAAGAATAATGAACAAAACTGAGATTCCGATTACTTCTTATTGTATACACAAAAAGGG  ATATATATATATATATATTCCAATGAGTCAAAATTAAGTGAAAGTTCTTTGTATATAATTTTGTAATGTATACATTCATGTGTACCAATGGTAAATTTTGGGGAAAAGAGAAATACAAAGTACCTGATAAAAAAATTTGTTAACTATTATCAATTACGAGAACTGTTTCGTATACGAAGTGAATTTTTGTAAGTGTTATCTTGAACTGACTTTTTTACGGGTGTATTTTTATTATTGTGACGCGTAGATGGTGGTCGACCAATGCGGAATACATATATATTAAGAAAGTTAGCCAACTGTATACATACATCAGCATCATATAATATGATATTCACAGTTCCGAATATCAAAGATATCCACAGAACTAAGACTTCAGGAAAGGGACACGAAAAATATTGATTGATGACTAACAAAGCTGCCCCAAACATAACAGCGTCAAACAAATAAATAGCACTTTTAGTAATATGAGCGATCACTAGACGTTGAGAAACTTTGGCTGAAACAATCCCAAACGTCAACAGGAAAATAAAAGGTGATTGGTGATAAAGATTCACCCCTCGTGCCGAATTNTTGGCTCGA]


>consensus_10103#2 TTATGCACTCCATGTAAAAGAAAAAACTTCATACGTANTCATGAGCATGGGAAATTGCAA ATTACGTGGACTTAATGAACCGCATAAATAAAAACTTTTGTACAGCCGAAAACGAAACGG ATTCTCAATTCAATCATTTTGTGGATTATGATGTTCTAAGAATAATGAACAAAACTGAGA TTCCGATTACTTCTTATTGTATACACAAAAAGGGATATATATATATATATATATTCCAAT GAGTCAAAATTAAGTGAAAGTTCTTTGTATATAATTTTGTAATGTATACATTCATGTGTA CCAATGGTAAATTTTGGGGAAAAGAGAAATACAAAGTACCTGATAAAAAAATTTGTTAAC TATTATCAATTACGAGAACTGTTTCGTATACGAAGTGAATTTTTGTAAGTGTTATCTTGA ACTGACTTTTTTACGGGTGTATTTTTATTATTGTGACGCGTAGATGGTGGTCGACCAATG CGGAATACATATATATTAAGAAAGATAGCCAACTGTATACATACATCAGCATCATATAAT ATGATATTCACAGTTCCGAATATCAAAGATATCCACAGAACTAAGACTTCAGGAAAGGGA CACGAAAAATATTGATTGATGACTAACAAAGCTGCCCCAAACATAACAGCGTCAAACAAA TAAATAGCACTTTTAGTAATATGAGCGATCACTAGACGTTGAGAAACTTTGGCTGAAACA ATCCCAAACGTCAACAGGAAAATAAAAGGTGATTGGTGATAAAGATTCACCCCTCGTGCC GAATTNTTGGCTCGA



consensusID : consensus_10103#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 628
fasta sequence
                              [GCAGTCGAAATAAGTTACTGTTTGTTTATTATTTATAAATTCTAGATATTCGGAACTGTGAATATCATATTATATGATGCTGATGTATGTATACAGTTGGCTAACTTTCTTAATATATATGTATTCCGCATTGGTCGACCACCATCTACGCGTCACAATAATAAAAATACACCCGTAAAAAAGTCAGTTCAAGATAACACTTACAAAAATTCACTTCGTATACGAAACAGTTCTCGTAATTGATAATAGTTAACAAATTTTTTTATCAGGTACTTTGTATTTCTCTTTTCCCCAAAATTTACCATTGGTACACATGAATGTATACATTACAAAATTATATACAAAGAACTTTCACTTAATTTTGACTCATTGGAATATATATATATATATATATATCCCTTTTTGTGTATACAATAAGAAGTAATCGGAATCTCAGTTTTGTCCATTATTCTTAGAACATCATAATCCACAAAATGATTGAATTGAGAATCCGTTTCGTTTTCGGCTGTACAAAAGTTTTTATTTATGCGGTTCATTAAGTCCACGTAATTTGCAATTTCCCATGCTCATGATACGTATGAAGTTTTTTTCTTTACAATGGGGTGCATAATTTCCACCTATTTATACT]

[-] EMBL CD151723             [GCAGTCGAAATAAGTTACTGTTTGTTTATTATTTATAAATTCTAGATATTCGGAACTGTGAATATCATATTATATGATGCTGATGTATGTATACAGTTGGCTAACTTTCTTAATATATATGTATTCCGCATTGGTCGACCACCATCTACGCGTCACAATAATAAAAATACACCCGTAAAAAAGTCAGTTCAAGATAACACTTACAAAAATTCACTTCGTATACGAAACAGTTCTCGTAATTGATAATAGTTAACAAATTTTTTTATCAGGTACTTTGTATTTCTCTTTTCCCCAAAATTTACCATTGGTACACATGAATGTATACATTACAAAATTATATACAAAGAACTTTCACTTAATTTTGACTCATTGGAATATATATATATATATATATATCCCTTTTTGTGTATACAATAAGAAGTAATCGGAATCTCAGTTTTGTCCATTATTCTTAGAACATCATAATCCACAAAATGATTGAATTGAGAATCCGTTT                                                                                                                                    ]
[+] EMBL CD160712             [                                                                                                                                                                                                                        CGTATACGAAACAGTTCTCGTAATTGATAATAGTTAACAAATTTTTTTATCAGGTACTTTGTATTTCTCTTTTCCCCAAAATTTACCATTGGTACACATGAATGTATACATTACAAAATTATATACAAAGAACTTTCACTTAATTTTGACTCATTGGA  ATATATATATATATATATATCCCTTTTTGTGTATACAATAAGAAGTAATCGGAATCTCAGTTTTGTTCATTATTCTTAGAACATCATAATCCACAAAATGATTGAATTGAGAATCCGTTTCGTTTTCGGCTGTACAAAAGTTTTTATTTATGCGGTTCATTAAGTCCACGTAATTTGCAATTTCCCATGCTCATGATACGTATGAAGTTTTTTTCTTTACAATGGGGTGCATAATTTCCACCTATTTATACT]


>consensus_10103#3 GCAGTCGAAATAAGTTACTGTTTGTTTATTATTTATAAATTCTAGATATTCGGAACTGTG AATATCATATTATATGATGCTGATGTATGTATACAGTTGGCTAACTTTCTTAATATATAT GTATTCCGCATTGGTCGACCACCATCTACGCGTCACAATAATAAAAATACACCCGTAAAA AAGTCAGTTCAAGATAACACTTACAAAAATTCACTTCGTATACGAAACAGTTCTCGTAAT TGATAATAGTTAACAAATTTTTTTATCAGGTACTTTGTATTTCTCTTTTCCCCAAAATTT ACCATTGGTACACATGAATGTATACATTACAAAATTATATACAAAGAACTTTCACTTAAT TTTGACTCATTGGAATATATATATATATATATATATCCCTTTTTGTGTATACAATAAGAA GTAATCGGAATCTCAGTTTTGTCCATTATTCTTAGAACATCATAATCCACAAAATGATTG AATTGAGAATCCGTTTCGTTTTCGGCTGTACAAAAGTTTTTATTTATGCGGTTCATTAAG TCCACGTAATTTGCAATTTCCCATGCTCATGATACGTATGAAGTTTTTTTCTTTACAATG GGGTGCATAATTTCCACCTATTTATACT



consensusID : consensus_10103#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 334
fasta sequence
                              [AAGCCATCTAGGGCATCTAAAGTTTGGTACGCGAATACACACACTACAAACACCAACGAAGTAAAGAAACAAGCCCCATAAGACAACAGCAAACACAAAGCAAATACATTGGCGAGAAGACCAATTATAGTGAGAGTATTGGGAGCAATATATGTTGGTATATACAAAGAAGATACACGCCAAAAGTCCTTAAGTAAGTTGTCACATATGCCTTCTCCTTCACAGTGGTACTTATGTTCAAGCAAACGATTTAACTGGTCTTTGGAGATTGACTTGCCGACTACCCATGGGGCCATACCCAAATTCCAACGAAAACTTTTGTAAAATGCGCTAT]

[+] EMBL CD189893             [AAGCCATCTAGGGCATCTAAAGTTTGGTACGCGAATACACACACTACAAACACCAACGAAGTAAAGAAACAAGCCCCATAAGACAACAGCAAACACAAAGCAAATACATTGGCGAGAAGACCAATTATAGTGAGAGTATTGGGAGCAATATATGTTGGTATATACAAAGAAGATACACGCCAAAAGTCCTTAAGTAAGTTGTCACATATGCCTTCTCCTTCACAGTGGTACTTATGTTCAAGCAAACGATTTAACTGGTCTTTGGAGATTGACTTGCCGACTACCCATGGGGCCATACCCAAATTCCAACGAAAACTTTTGTAAAATGCGCTAT]
[+] EMBL CD158271             [                                                                                                                                                                         AAGATACACGCCAAAAGCCCTTAAGTAAGTTGTCACATATGCCTTCTCCTTCACAGTGGTACTTATGTTCAAGCAAACGATTTAACTGGTCTTTGGAGATTG                                                               ]


>consensus_10103#4 AAGCCATCTAGGGCATCTAAAGTTTGGTACGCGAATACACACACTACAAACACCAACGAA GTAAAGAAACAAGCCCCATAAGACAACAGCAAACACAAAGCAAATACATTGGCGAGAAGA CCAATTATAGTGAGAGTATTGGGAGCAATATATGTTGGTATATACAAAGAAGATACACGC CAAAAGTCCTTAAGTAAGTTGTCACATATGCCTTCTCCTTCACAGTGGTACTTATGTTCA AGCAAACGATTTAACTGGTCTTTGGAGATTGACTTGCCGACTACCCATGGGGCCATACCC AAATTCCAACGAAAACTTTTGTAAAATGCGCTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10103#0      ------------------------------------------------------------
consensus_10103#4      ------------------------------------------------------------
consensus_10103#1      ------------------------------------------------------------
consensus_10103#3      GCAGTCGAAATAAGTTACTGTTTGTTTATTATTTATAAATTCTAGATATTCGGAACTGTG 60
consensus_10103#2      ------------------------------------------------------------
                                                                                   

consensus_10103#0      ------------------------------------------------------------
consensus_10103#4      ------------------------------------------------------------
consensus_10103#1      ------------------------------------------------------------
consensus_10103#3      AATATCATATTATATGATGCTGATGTATGTATACAGTTGGCTAACTTTCTTAATATATAT 120
consensus_10103#2      ------------------------------------------------------------
                                                                                   

consensus_10103#0      ------------------------------------------------------------
consensus_10103#4      ------------------------------------------------------------
consensus_10103#1      ------------------------------------------------------------
consensus_10103#3      GTATTCCGCATTGGTCGACCACCATCTACGCGTCACAATAATAAAAATACACCCGTAAAA 180
consensus_10103#2      -----------------------------------------------------------T 1
                                                                                   

consensus_10103#0      ---------------AGGTGGTGGCCCAAGCGGGATCCCTATTATTTAAAAAGTTAGCCA 45
consensus_10103#4      ------------------------------------------------------------
consensus_10103#1      ----------------------------------------------CCTTTAATTCGGCA 14
consensus_10103#3      AAGTCAGTTCAAGATAACACTTACAAAAATTCACTTCGTATACGAAACAGTTCTCGTAAT 240
consensus_10103#2      TATGCACTCCATGTAAAAGAAAAAACTTCATACGTANTCATGAGCATGGGAAATTGCAAA 61
                                                                                   

consensus_10103#0      CTGTATCCA-TCAACCAGCCTCTATAATATGTATTTCCAAGTTCGAATATCCAAGATATC 104
consensus_10103#4      -------------------------------------------AAGCCATCTAGGGCATC 17
consensus_10103#1      CGCAGGGAG-TTAACAAATTTTTTTATCAGGTACTTTGTATTTCTCTTTTCCCCAAAATT 73
consensus_10103#3      TGATAATAG-TTAACAAATTTTTTTATCAGGTACTTTGTATTTCTCTTTTCCCCAAAATT 299
consensus_10103#2      TTACGTGGACTTAATGAACCGCATAAATAAAAACTTTTGTACAGCCGAAAACGAAACGGA 121
                                                                                   

consensus_10103#0      CCCAGAACTAA-GCCT---CAGGAAAGGGGCACGAAAAA------TATGATTGATGGCTA 154
consensus_10103#4      T--AAAGTTTG-GTAC---GCGAATACACACACTACAAA------CACCAACGAAG--TA 63
consensus_10103#1      T--ACCATTGGTACAC---ATGAATGTATACATTACAAAATTATATACAAAGAACTTTCA 128
consensus_10103#3      T--ACCATTGGTACAC---ATGAATGTATACATTACAAAATTATATACAAAGAACTTTCA 354
consensus_10103#2      TTCTCAATTCAATCATTTTGTGGATTATGATGTTCTAAGAATAATGAACAAAACTGAGAT 181
                               *            * *            **        *  *          

consensus_10103#0      CAAAAGCTGCCCCAAACATA---ACAGCGTCAAACAAATAGATAGCACTCTTAGTAATAT 211
consensus_10103#4      AAGAAACAAGCCCCA-TAAG---ACAACAGCAAACACAAAGCAAATACA-TTGGCGAGAA 118
consensus_10103#1      CTTAATTTTGACTCATTGGA---ATATATATATATATATATAT--CCCTTTTTGTGTATA 183
consensus_10103#3      CTTAATTTTGACTCATTGGA---ATATATATATATATATATATATCCCTTTTTGTGTATA 411
consensus_10103#2      TCCGATTACTTCTTATTGTATACACAAAAAGGGATATATATATA-TATATATATTCCAAT 240
                           *      *  *        * *       * * * *           *        

consensus_10103#0      GAGCGATCACTAGACGTTGAGAACTTTGGCTGAAACA-ATCCAAACGTCAACAGGAAAAT 270
consensus_10103#4      GACCAATTA-TAG----TGAGAGTATTGGGAGCAATATATGTTGGTATATACAAAGAAGA 173
consensus_10103#1      CAATAAGAAGTAA----TCGGAATCTCAGTTTTGTTC------ATTATTCTTAGAACATC 233
consensus_10103#3      CAATAAGAAGTAA----TCGGAATCTCAGTTTTGTCC------ATTATTCTTAGAACATC 461
consensus_10103#2      GAGTCAAAATTAAG---TGAAAGTTCTTTGTATATAATTTTGTAATGTATACATTCATGT 297
                        *   *  * **     *   *                         *    *       

consensus_10103#0      AAAAGGTGATTGGTGATAAAGATTCACCGGAGAATTAATAGCAACCAAAACAGGAAAACC 330
consensus_10103#4      TACACGCCAAAAGTCCTTAAG-TAAGTTGTCACATATGCCTTCTCCTTCACAGTGGTACT 232
consensus_10103#1      ATAATCCACAAAATGATTGAA-TTGAGAATCCGTTTCGTTTTCGGCTGTACAAAAGTTTT 292
consensus_10103#3      ATAATCCACAAAATGATTGAA-TTGAGAATCCGTTTCGTTTTCGGCTGTACAAAAGTTTT 520
consensus_10103#2      GTACCAATGGTAAATTTTGGGGAAAAGAGAAATACAAAGTACCTGATAAAAAAATTTGTT 357
                                       *                                * *        

consensus_10103#0      AAG-TGCAAGTGTAAGAGGGCAAACTGGAAATAGTACACTAGTATTAGCAACGGTTGTCC 389
consensus_10103#4      TA--TGTTCAAGCAAACGATTTAACTGGTCTTTGGAGATTGAC-TTGCCGACTACCCATG 289
consensus_10103#1      TATTTAT-CGGTTCATTAAGTCCAC--GTAATT-GCAATTTCCCATGCTCATGATACGTA 348
consensus_10103#3      TATTTATGCGGTTCATTAAGTCCAC--GTAATTTGCAATTTCCCATGCTCATGATACGTA 578
consensus_10103#2      AACTATTATCAATTACGAGAACTGTTTCGTATACGAAGTGAATTTTTGTAAGTGTTATCT 417
                        *            *                *             *    *         

consensus_10103#0      CGTATTTACCACAACCACCTTGAGAAATAGTATCAGCA---AACTGAACTGCCAGAAGAA 446
consensus_10103#4      GGGCCATACCCAAATTCCAACGAAAACT----TTTGTA---AAATGCGCTAT-------- 334
consensus_10103#1      TAAG--TTTTTTCTTTACAATGGAGTGCATAATTTCCACCTATTTATACTTTCTGTTTAT 406
consensus_10103#3      TGAAGTTTTTTTCTTTACAATGGGGTGCATAATTTCCACCTATTTATACT---------- 628
consensus_10103#2      TGAACTGACTTTTTTACGGGTGTATTTT--TATTATTGTGACGCGTAGATGGTGGTCGAC 475
                                            *          *                *          

consensus_10103#0      ACATGACAATTGAGAACACGAGGAACTGAACAACCTTGAGTTCCAAACCGAAAAGTGGAT 506
consensus_10103#4      ------------------------------------------------------------
consensus_10103#1      CCTTCCCTTATTCTTATGGTGTTTTTCTTTGCTATTTACTTTCCTTGTGTTTTACGCGCC 466
consensus_10103#3      ------------------------------------------------------------
consensus_10103#2      CAATGCGGAATACATATATATTAAGAAAGATAGCC---AACTGTATACATACATCAGCAT 532
                                                                                   

consensus_10103#0      CTTTCATGCTCCAAATAGAGTGACCAAATATTGAAGATATCGTCCCAAATAAAATTCCAA 566
consensus_10103#4      ------------------------------------------------------------
consensus_10103#1      ATTTGTACCAGTCAAACTAGCTTATTTTTATAATAATTTATTTATTTATTTCTCTTAAAA 526
consensus_10103#3      ------------------------------------------------------------
consensus_10103#2      CATATAATATGATATTCACAGTTCCGAATATCAAAGATATCCACAGAACTAAGACTTCAG 592
                                                                                   

consensus_10103#0      TTAAGAGTACCTCTGTCACTCCGACCCGGTCAAAGGCAAGAACTCCCGTGACATAACATC 626
consensus_10103#4      ------------------------------------------------------------
consensus_10103#1      TAAAGATCCACATTTACGATTATCTTCTGTGTTTCCCATTTGTCTTACGATTGTGTTATA 586
consensus_10103#3      ------------------------------------------------------------
consensus_10103#2      GAAAGGG--ACACGAAAAATATTGATTGATGACTAACAAAGCTGCCCCAAACATAACAGC 650
                                                                                   

consensus_10103#0      GCCAATGGGCTACATAAAAATAAGCTTGGATACAGAAGTATTGAATGAACATCAACATAG 686
consensus_10103#4      ------------------------------------------------------------
consensus_10103#1      TATGTGTATACATCAAATCCATTCTAAATCCCTGTTAAAATGAAAAAAGATATAACATAC 646
consensus_10103#3      ------------------------------------------------------------
consensus_10103#2      GTCAAACAAATAAATAGCACT---TTTAGTAATATGAGCGATCACTAGACGTTGAGAAAC 707
                                                                                   

consensus_10103#0      GCCAGTCATCCAAACCAATGACGATGAAATAACTTATGGNGAGGATACATGTGGATAAAG 746
consensus_10103#4      ------------------------------------------------------------
consensus_10103#1      TCCTGGTTTTCTTTATAAATACCAGGTGTCAATCTATGTATCTTCCTGTTTTGAATTTTT 706
consensus_10103#3      ------------------------------------------------------------
consensus_10103#2      TTTGGCTGAAACAATCCCAAACGTCAACAGGA---AAATAAAAGGTGATTGGTGATAAAG 764
                                                                                   

consensus_10103#0      CATCACAACCATGGTCAA-ACAGTTCACCAAGCTGAGAACAAGACCCTGTACGGCGAGCT 805
consensus_10103#4      ------------------------------------------------------------
consensus_10103#1      GTATGTATTTGTGGGCATTGTTGATTATTGTACTCTTTTTCTTAGATATTTCCCATATCA 766
consensus_10103#3      ------------------------------------------------------------
consensus_10103#2      ATTCACCCCTCGTGCCGAATTNTTGGCTCGA----------------------------- 795
                                                                                   

consensus_10103#0      TGCAAGCCATCTAGGGCATCTAAAGTTTGGTACGCGAATACACACACTACCAACACCACC 865
consensus_10103#4      ------------------------------------------------------------
consensus_10103#1      TGATTTACTTTTATTGTCTGTAGAGTTTTTTTGTATTAGAATTTTGCCAAATAGATGTGC 826
consensus_10103#3      ------------------------------------------------------------
consensus_10103#2      ------------------------------------------------------------
                                                                                   

consensus_10103#0      GAAGTAAAGGAACCAGCCCCCATAGAACAACAGCCAACACAAAGGCAATCACTTTGGCG 924
consensus_10103#4      -----------------------------------------------------------
consensus_10103#1      -----------------------------------------------------------
consensus_10103#3      -----------------------------------------------------------
consensus_10103#2      -----------------------------------------------------------
                                                                                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)