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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 835 fasta sequence
[GAATATTTCTTTGGTTCCTGTTGAAATGTTGCCAGGTAGCTCAGTTTATATTGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA-TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCA-CTACAGTAC-TTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGTAACAACAACAGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGATCACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTACTGTTTTCTATTTCAAAGCGATATAATGTTTCAAGTTTTCTATAATAGTCACAGCAAACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCGTATGTAGCGAACATTATACAAAATTGTCACTCACGTTCATACCATATGGGCGAAACGAAGAGCATAAATGGACATTAGTTCTTTTGTTTAATCGTATGGAACCAAACAAAACTTCGAAT]
[+] EMBL CD186887 [GAATATTTCTTTGGTTCCTGTTGAAATGTTGCCAGGTAGCTCAGTTTATATTGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCA CTACAGTAC TTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGTAACAAC ]
[+] EMBL CD187440 [ AATATTTCTTTGGTTCCTGTTGAAATGTTGCCAGGTAGCTCAGTTTATATTGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCA CTACAGTAC TTCCAAACACAACAGATCCTTCACAT ]
[+] EMBL CD202240 [ AATATTTCTTTGGTTCCTGTTGAAATGTTGCCAGGTAGCTCAGTTTATATTGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCA CTACAGTAC TTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACG ]
[-] EMBL CD186504 [ ATATTTCTTTGGTTCCTGTTGAAATGTTGCCAGGTAGCTCAGTTTATATTGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTC ]
[+] EMBL CD169882 [ ATATTGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACC ]
[-] EMBL CD187531 [ ATGGAGCTTTTGTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCA CTACAGTAC TTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGTAACAACAACAGAAGTGATAACAAAAGAAATGG ]
[+] EMBL CD179378 [ TCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGGTTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAATTTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACA ]
[-] EMBL CD167565 [ GACAGAAGAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCA CTACAGTAC TTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAAC TCAca ]
[+] EMBL CD185619 [ GAAACAGAAGTGACTGATTATTCTGATGACATAA TTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTATCTCTATAATACGATAAT AACCACCTACAcg ]
[+] EMBL CD129231 [ AACCA CTACAGTACTTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGTAACAACAACAGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGATCACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTACTGTTTTCTATTTCAAAGCGATATAATGTTTCAAGTTTTCTATAATAGTCACAGCAAACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCGTATGTAGCGAACATTATACAAAATTGTCACTCACGTTCATACCATATGGGCGAAACGAAGAGCATAAATGGACATTAGTTCTTTTGTTTAAT ]
[+] EMBL CD191801 [ CGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGTAACAACAACAGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGATCACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTACTGTTTTCTATTTCAAAGCGATATAATGTTTCAAGTTTTCTATAATAGTCACAGCAAACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCGTATGTAGCGAACATTATACAAAATTGTCACTCACGTTCATACCATATGGGCGAAACGAAGAGCATAAATGGACATTAGTTCTTTTGTTTAATCGTATGGAACCAAACAAAACTTCGAAT]
consensusID : consensus_10119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence
[GAAGTGACAACAGCAGGAGTAACAACGACAGAAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCACTACAGTACTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACTGATTATTCTGATGACATAATTTTTCCAGCCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCACTACAGTACTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCA]
[+] EMBL CD194709 [GAAGTGACAACAGCAGGAGTAACAACGACAGAAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCACTACAGTACTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACTGATTATTCTGATGACATAATTTTTCCAGCCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCACTACAGTACTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCA]
consensusID : consensus_10119#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence
[ATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACAGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGATCACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTACTGTTTTCTATTTCAAAGCGATATAATGTTTCAAGTTTTCTATAATAGTCACAGCAAACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCGTATGTAGCGAACATTATACAAGATTGTCACTCACGTTCATACCATATNN]
[+] EMBL CD195769 [ATCATTCACATGATTCGACTATAGCGACAGAAACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAACAACGAAAGAAACAACAGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGATCACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTACTGTTTTCTATTTCAAAGCGATATAATGTTTCAAGTTTTCTATAATAGTCACAGCAAACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCGTATGTAGCGAACATTATACAAGATTGTCACTCACGTTCATACCATATNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10119#0 GAATATTTCTTTGGTTCCTGTTGAAATGTTGCCAGGTAGCTCAGTTTATATTGAGCTTTT 60
consensus_10119#2 ------------------------------------------------------------
consensus_10119#1 ------------------------------------------------------------
consensus_10119#0 GTTTCTCGTGCTGTTATCACATTCCAGTAGTGATGTATACGGGTTTACAGATGCGGATGG 120
consensus_10119#2 ------------------------------------------------------------
consensus_10119#1 ------------------------------------------------------------
consensus_10119#0 TTATAAGAGCTCGTCACAATCTTCGGAGACAGAAGAAACAGAAGTGACTGATTATTCTGA 180
consensus_10119#2 ------------------------------------------------------------
consensus_10119#1 ----------------------------------------------GAAGTGACAACAGC 14
consensus_10119#0 TGACATAATTTTTCCAGTCATTAATGTATCTTACGATAACATGACTGCTAATGGTACTAC 240
consensus_10119#2 ------------------------------------------------------------
consensus_10119#1 AGGAGTAACAACGACAGAAGTGACAACAACGAAAGAAACAACGGCAGGAGTGACAACAAC 74
consensus_10119#0 TGTACCATATTTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATC 300
consensus_10119#2 ------------------------------------------------------------
consensus_10119#1 GGAAGTGACAACAGCAGGAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATC 134
consensus_10119#0 AACCACTACAGTACTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGA 360
consensus_10119#2 -----------------------------ATCATTCACATGATTCGACTATAGCGACAGA 31
consensus_10119#1 AACCACTACAGTACTTCCAAACACAACAGATCATTCACATGATTCGACTATAGCGACAGA 194
*******************************
consensus_10119#0 AACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAAC 420
consensus_10119#2 AACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAAC 91
consensus_10119#1 AACAACGTCAACAACGGAAACAGCGACGACAAGGGGAATGACAACGGCAGGAGTGACAAC 254
************************************************************
consensus_10119#0 AACGAAAGAAACAACGGCAGGAGTGACAACAACGGAAGTGACAACAGCAGGAGTAACAAC 480
consensus_10119#2 AACGAAAGAAACAAC--------------------------------------------- 106
consensus_10119#1 AACGAAAGAAACAACGGC------------------------------------------ 272
***************
consensus_10119#0 AACAGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGAT 540
consensus_10119#2 ---AGAAGTGATAACAAAAGAAATGGAGACAACAGCAGTAATGACAACAACAGATATGAT 163
consensus_10119#1 ---AGGAGTGACAACAACGGAAGTG--------ACTGATTATTCTGATGACATA-ATTTT 320
** ***** ***** *** ** * * ** * *** * ** *
consensus_10119#0 CACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTA 600
consensus_10119#2 CACAACAGTTGTACCTATTCCGAGTGTACACAAATTTTCGTTGAAAAGTGGAAACTCTTA 223
consensus_10119#1 TCCAGCCATTA-ATGTATCTTACGATAACATGACTGCTAATGGTACTACTGTACCATAT- 378
** * ** * *** * *** * * * * * * * * * *
consensus_10119#0 CTGTTTTCTATTTCAA--AGCGATATAAT--GTTTCAAGTTTTCTATAATAGTCACAGCA 656
consensus_10119#2 CTGTTTTCTATTTCAA--AGCGATATAAT--GTTTCAAGTTTTCTATAATAGTCACAGCA 279
consensus_10119#1 TTACCTACAGCAACAACAACCGATGAACCTAACTCTACAATTCGCGAATCAACCACTACA 438
* * * *** * **** * * * ** * * *** **
consensus_10119#0 AACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCG 716
consensus_10119#2 AACTGGTAAAATCTTACAAATTTACTTTATCTAATGCCACTATTAACGATAATGAAAGCG 339
consensus_10119#1 GTACTTCCAAACACAACAGATCA--TTCACATGATTCGACTAT-AGCGACAGAAACAACG 495
*** *** ** ** * * ** * ***** * *** * * * **
consensus_10119#0 TATGTAGCGAACATTATACAAAATTGTCACTCACGTTCATACCATATGGGCGAAACGAAG 776
consensus_10119#2 TATGTAGCGAACATTATACAAGATTGTCACTCACGTTCATACCATATNN----------- 388
consensus_10119#1 TCA--------------------------------------------------------- 498
*
consensus_10119#0 AGCATAAATGGACATTAGTTCTTTTGTTTAATCGTATGGAACCAAACAAAACTTCGAAT 835
consensus_10119#2 -----------------------------------------------------------
consensus_10119#1 -----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||