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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10122#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 784 fasta sequence
[GCGAAAAGTGACAGAAAAACTAAGTAATAAATTAGTGATTAATTAACAATACAGTAGAACAACAATTTATACATCAAATGAAAGCTGGCAAATAGGGTAACATAATACAGTAATCCAGGTGTATAATAATTATGCAATCAAAATGCAAACAATAATTCTTCATAAGACAGTTCTAAAAGTTGCAGATTTCACAATATTTTCTTCGTTTTAACACATATGACGTGGAAAACACACAAATCCAGAATAATAACAATTCTTTGTGAGTCTTTATTGTAAGCGCCCACTTTCTTGATTACAACTTAATGTGTTATTTACTATCCTCATAAGTAGTAGCTTCGGTCTGTTTCTCATTCAATTCCTGAAGTCGATTACTTAACTTTTCTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGAT-CCAAAAGCCTTCTTAGTTGCAGTTGTCATTCCTATGTATTT]
[+] EMBL CD063001 [GCGAAAAGTGACAGAAAAACTAAGTAATAAATTAGTGATTAATTAACAATACAGTAGAACAACAATTTATACATCAAATGAAAGCTGGCAAATAGGGTAACATAATACAGTAATCCAGGTGTATAATAATTATGCAATCAAAATGCAAACAATAATTCTTCATAAGACAGTTCTAAAAGTTGCAGATTTCACAATATTTTCTTCGTTTTAACACATATGACGTGGAAAACACACAAATCCAGAATAATAACAATTCTTTGTGAGTCTTTATTGTAAGCGCCCACTTTCTTGATTACAACTTAATGTGTT ]
[+] EMBL CD133440 [ TAGCATAATACAGTAATCCAGGTGTATAATAATTATGCAATCAAAATGCAAACAATAATTCTTCATAAGACAGTTCTAAAAGTTGCAGATTTCACAATATTTTCTTCGTTTTAACACATATGACGTGGAAAACACACAAATCCAGAATAATAACAATTCTTTGTGAGTCTTTATTGTAAGCGCCCACTTTCTTGATTACAACTTAATGTGTTATTTACTATCCTCATAAGTAGTAGCTTCGGTCTGTTTCTCATTCAATTCCTGAAGTCGATTACTTAACTTTCCTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACA ]
[+] EMBL CD133431 [ ATTATGCAATCAAAATGCAAACAATAATTCTTCATAAGACAGTTCTAAAAGTTGCAGATTTCACAATATTTTCTTCGTTTTAACACATATGACGTGGAAAACACACAAATCCAGAATAATAACAATTCTTTGTGAGTCTTTATTGTAAGCGCCCACTTTCTTGATTACAACTTAATGTGTTATTTACTATCCTCATAAGTAGTAGCTTCGGTCTGTTTCTCATTCAATTCCTGAAGTCGATTACTTAACTTTTCTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTNTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGAT CCAAAGCCCTTC TAGTTGCAGTTGTCATTCCTATGTAT ]
[+] EMBL CD137230 [ TTCGGTCTGTTTCTCATTCAATTCCTGAAGTCGGTTACTTAACTTTTCTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGAT CCAAAAGCCTTCTTAGTTGCAG ]
[+] EMBL CD137290 [ TTCGGTCTGTTTCTCATTCAATTCCTGAAGTCGATTACTTAACTTTACTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGGT CCAAAAGCCTTCTTAGTTGCAG ]
[-] EMBL CD137129 [ TCGGTCTGTTTCTCATTCAATTCCTGAAGTCGATTACTTAACTTTTCTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGGATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGAT CCAAAAGCCTTCTTAGTTGCAGT ]
[-] EMBL CD111548 [ AATTCCTGAAGTCGATTACTTAACTTTTCTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGACTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTACAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGAT CCAAAAGCCTTCTTAGTTGCAGTTGTCATTC TGTATTT]
[-] EMBL CD136654 [ CATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGATATGAAAAGC ]
[-] EMBL CD136745 [ ATAAGATGAACCACCAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGAT CCAAAAGCCTTCTTAGTTGCAGTTGTCATTCCTATGaaggg]
[-] EMBL CD137040 [ AACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCATCTGAT CCAAAAGCCTTCTTAGTTGCAGTTGTCAT ]
consensusID : consensus_10122#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence
[CAATAAAACCATACTTAGATCATAAATCAATAGTATACTAGAGACTTTTTCTCATCTATCTCAAGTCAAAGAAAGAAATTAAGACGTATTCGTTTAAACTCATCAAACTTGAGTCAGGTTACATAAACACAGCCGATAAAAAACAGAGGTTAACAGCATAACAAAACGTCTAAAATTGATATCCATAAATCTTAATGTCAAAAAAGCGTGAGACTCACGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGGAGTGTGTAAACAACCAACTGATCCTTTAGATGATTATTAATTTTTTAAAATACTTGGACCTTTAAATTGACTTATTTAACATANCCAAAGCCTTCTTAATTGCAGTTGTCATTCTGTA-TTATATAAAGAATGTACATAAAAATCAGGATTAGGATAAGTCGGTAAAGGAANNACAGTGAACAAATTAAATCATA]
[+] EMBL CD061096 [CAATAAAACCATACTTAGATCATAAATCAATAGTATACTAGAGACTTTTTCTCATCTATCTCAAGTCAAAGAAAGAAATTAAGACGTATTCGTTTAAACTCATCAAACTTGAGTCAGGTTACATAAACACAGCCGATAAAAAACAGAGGTTAACAGCATAACAAAACGTCTAAAATTGATATCCATAAATCTTAATGTCAAAAAAGCGTGAGACTCACGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGGAGTGTGTAAACAACCAACTGATCCTTTAGATGATTATTAATTTTTTAAAATACTTGGACCTTTAAATTGACTTATTTAACATANCCAAAGCCTTCTTAATTGCAGTTGTCATTCTGTA TT ]
[+] EMBL CD129876 [ CATACTTAGATCATAAATCAATAGTATACTAGAGACTTTTTTTCATCTATCTCACGTCAAAGAAAGAAATTAAGACGTATTCGTTTAAACTCATCAAACTTGAGTCAGGTTACATAAACACAGCCGATAAAAAACAGAGGTTAACAGCATAACAAAACGTCTAAAATTGATATCCATAAATCTTAATGTCAAAAAAGCGTGAGACTCACGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGATCCTTTAGATGATTATTAATTTTTT AAATACAT GAACTTTAAATTGACTTATTTAACATACCAAAAGCCTTCTTAGTTGCAGTTGTCATTC CTACTGATATAAAGAATGTACATAAAAATCAGGATTAGGATAAGTCGGTAAAGGAANNACAGTGAACAAATTAAATCATA]
consensusID : consensus_10122#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence
[TGGTTTCATTACGGCCTTTANTTAGGCCTAGGATTATGGTACGTGTGTGGCCCGCAAGTGTCACCTCATTCACGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGATCCAAAAGCCTTCTTAGT]
[+] EMBL AI395375 [TGGTTTCATTACGGCCTTTANTTAGGCCTAGGATTATGGTACGTGTGTGGCCCGCAAGTGTCACCTCATTCACGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGATCCAAAAGCCTTCTTAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10122#0 GCGAAAAGTGACAGAAAAACTAAGTAATAAATTAGTGATTAATTAACAATACAGTAGAAC 60
consensus_10122#2 ------------------------------------------------------------
consensus_10122#1 ------------------------------------------------------------
consensus_10122#0 AACAATTTATACATCAAATGAAAGCTGGCAAATAGGGTAACATAATACAGTAATCCAGGT 120
consensus_10122#2 ------------------------------------------------------------
consensus_10122#1 ------------------------------------------------------------
consensus_10122#0 GTATAATAATTATGCAATCAAAATGCAAACAATAATTCTTCATAAGACAGTTCTAAAAGT 180
consensus_10122#2 ------------------------------------------------------------
consensus_10122#1 ------------------------------------------------------------
consensus_10122#0 TGCAGATTTCACAATATTTTCTTCGTTTTAACACATATGACGTGGAAAACACACAAATCC 240
consensus_10122#2 ------------------------------------------------------------
consensus_10122#1 ------------------------------------------------------------
consensus_10122#0 AGAATAATAACAATTCTTTGTGAGTCTTTATTGTAAGCGCCCACTTTCTTGATTACAACT 300
consensus_10122#2 ------------------------------------------------------------
consensus_10122#1 -------------------------------------------------------CAA-- 3
consensus_10122#0 TAATGTGTTATTTACTATCCTCATAAGTAGTA-GCTTCGGTCTGTTTCTCATTCAATTCC 359
consensus_10122#2 ------------------------------------------------------------
consensus_10122#1 TAAAACCATACTTAGATCATAAATCAATAGTATACTAGAGACTTTTTCTCATCTATCTC- 62
consensus_10122#0 TGAAGTCGATTACTTAACTTTTCTGAAAAGCTATGTCGAAATAATGGGCTTCGAA-CAGA 418
consensus_10122#2 ------------------------------------------------------------
consensus_10122#1 --AAGTCAAAGAAAGAAATTA--AGACGTATTCGTTTAAACTCATCAAACTTGAGTCAGG 118
consensus_10122#0 TAACA-GAGCGTAGATTGTTTCATAATAATCTTCATGGTCTA-CAGAGTGTATTACAGAA 476
consensus_10122#2 ------------------------------------------------------------
consensus_10122#1 TTACATAAACACAGCCGATAAAAAACAGAGGTTAACAGCATAACAAAACGTCT---AAAA 175
consensus_10122#0 TAGGAATCATCAACTGACTGTTTTCTGACTTCATCA----TAAGATGAACCAACAGGACA 532
consensus_10122#2 --------------------------------------------TGGTTTCATTACGGCC 16
consensus_10122#1 TTGATATCCATAAATCTTAATGTCAAAAAAGCGTGAGACTCACGATGAACCAACAGGACA 235
* ** * * *
consensus_10122#0 AAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAA 592
consensus_10122#2 T--TTANTTAGGCCTAGGATTATGGTACGTGTG-TGGCCCGCAAGTGTCACCTCATTCAC 73
consensus_10122#1 AAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAA 295
* ** *** * * ** * * * *** * * *** * *****
consensus_10122#0 GTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACC 652
consensus_10122#2 GTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACC 133
consensus_10122#1 GTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACC 355
************************************************************
consensus_10122#0 GAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATG 712
consensus_10122#2 GAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATG 193
consensus_10122#1 GAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATG 415
************************************************************
consensus_10122#0 ACTATCGGCAGTGTGTAAACAACCAACTGATCCAAAAGCC--TTCTTAGTTGCAGTTGTC 770
consensus_10122#2 ACTATCGGCAGTGTGTAAACAACCAACTGATCCAAAAGCC--TTCTTAGT---------- 241
consensus_10122#1 ACTATCGGGAGTGTGTAAACAACCAACTGATCCTTTAGATGATTATTAATTTT--TTAAA 473
******** ************************ ** ** *** *
consensus_10122#0 ATTCCTATGTATTT---------------------------------------------- 784
consensus_10122#2 ------------------------------------------------------------
consensus_10122#1 ATACTTGGACCTTTAAATTGACTTATTTAACATANCCAAAGCCTTCTTAATTGCAGTTGT 533
consensus_10122#0 ------------------------------------------------------------
consensus_10122#2 ------------------------------------------------------------
consensus_10122#1 CATTCTGTATTATATAAAGAATGTACATAAAAATCAGGATTAGGATAAGTCGGTAAAGGA 593
consensus_10122#0 -------------------------
consensus_10122#2 -------------------------
consensus_10122#1 ANNACAGTGAACAAATTAAATCATA 618
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||