These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10122#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 784 fasta sequence [GCGAAAAGTGACAGAAAAACTAAGTAATAAATTAGTGATTAATTAACAATACAGTAGAACAACAATTTATACATCAAATGAAAGCTGGCAAATAGGGTAACATAATACAGTAATCCAGGTGTATAATAATTATGCAATCAAAATGCAAACAATAATTCTTCATAAGACAGTTCTAAAAGTTGCAGATTTCACAATATTTTCTTCGTTTTAACACATATGACGTGGAAAACACACAAATCCAGAATAATAACAATTCTTTGTGAGTCTTTATTGTAAGCGCCCACTTTCTTGATTACAACTTAATGTGTTATTTACTATCCTCATAAGTAGTAGCTTCGGTCTGTTTCTCATTCAATTCCTGAAGTCGATTACTTAACTTTTCTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGAT-CCAAAAGCCTTCTTAGTTGCAGTTGTCATTCCTATGTATTT] [+] EMBL CD063001 [GCGAAAAGTGACAGAAAAACTAAGTAATAAATTAGTGATTAATTAACAATACAGTAGAACAACAATTTATACATCAAATGAAAGCTGGCAAATAGGGTAACATAATACAGTAATCCAGGTGTATAATAATTATGCAATCAAAATGCAAACAATAATTCTTCATAAGACAGTTCTAAAAGTTGCAGATTTCACAATATTTTCTTCGTTTTAACACATATGACGTGGAAAACACACAAATCCAGAATAATAACAATTCTTTGTGAGTCTTTATTGTAAGCGCCCACTTTCTTGATTACAACTTAATGTGTT ] [+] EMBL CD133440 [ TAGCATAATACAGTAATCCAGGTGTATAATAATTATGCAATCAAAATGCAAACAATAATTCTTCATAAGACAGTTCTAAAAGTTGCAGATTTCACAATATTTTCTTCGTTTTAACACATATGACGTGGAAAACACACAAATCCAGAATAATAACAATTCTTTGTGAGTCTTTATTGTAAGCGCCCACTTTCTTGATTACAACTTAATGTGTTATTTACTATCCTCATAAGTAGTAGCTTCGGTCTGTTTCTCATTCAATTCCTGAAGTCGATTACTTAACTTTCCTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACA ] [+] EMBL CD133431 [ ATTATGCAATCAAAATGCAAACAATAATTCTTCATAAGACAGTTCTAAAAGTTGCAGATTTCACAATATTTTCTTCGTTTTAACACATATGACGTGGAAAACACACAAATCCAGAATAATAACAATTCTTTGTGAGTCTTTATTGTAAGCGCCCACTTTCTTGATTACAACTTAATGTGTTATTTACTATCCTCATAAGTAGTAGCTTCGGTCTGTTTCTCATTCAATTCCTGAAGTCGATTACTTAACTTTTCTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTNTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGAT CCAAAGCCCTTC TAGTTGCAGTTGTCATTCCTATGTAT ] [+] EMBL CD137230 [ TTCGGTCTGTTTCTCATTCAATTCCTGAAGTCGGTTACTTAACTTTTCTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGAT CCAAAAGCCTTCTTAGTTGCAG ] [+] EMBL CD137290 [ TTCGGTCTGTTTCTCATTCAATTCCTGAAGTCGATTACTTAACTTTACTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGGT CCAAAAGCCTTCTTAGTTGCAG ] [-] EMBL CD137129 [ TCGGTCTGTTTCTCATTCAATTCCTGAAGTCGATTACTTAACTTTTCTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGGATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGAT CCAAAAGCCTTCTTAGTTGCAGT ] [-] EMBL CD111548 [ AATTCCTGAAGTCGATTACTTAACTTTTCTGAAAAGCTATGTCGAAATAATGGGCTTCGAACAGATAACAGAGCGTAGATTGTTTCATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGACTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTACAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGAT CCAAAAGCCTTCTTAGTTGCAGTTGTCATTC TGTATTT] [-] EMBL CD136654 [ CATAATAATCTTCATGGTCTACAGAGTGTATTACAGAATAGGAATCATCAACTGACTGTTTTCTGACTTCATCATAAGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGATATGAAAAGC ] [-] EMBL CD136745 [ ATAAGATGAACCACCAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGAT CCAAAAGCCTTCTTAGTTGCAGTTGTCATTCCTATGaaggg] [-] EMBL CD137040 [ AACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCATCTGAT CCAAAAGCCTTCTTAGTTGCAGTTGTCAT ] consensusID : consensus_10122#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence [CAATAAAACCATACTTAGATCATAAATCAATAGTATACTAGAGACTTTTTCTCATCTATCTCAAGTCAAAGAAAGAAATTAAGACGTATTCGTTTAAACTCATCAAACTTGAGTCAGGTTACATAAACACAGCCGATAAAAAACAGAGGTTAACAGCATAACAAAACGTCTAAAATTGATATCCATAAATCTTAATGTCAAAAAAGCGTGAGACTCACGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGGAGTGTGTAAACAACCAACTGATCCTTTAGATGATTATTAATTTTTTAAAATACTTGGACCTTTAAATTGACTTATTTAACATANCCAAAGCCTTCTTAATTGCAGTTGTCATTCTGTA-TTATATAAAGAATGTACATAAAAATCAGGATTAGGATAAGTCGGTAAAGGAANNACAGTGAACAAATTAAATCATA] [+] EMBL CD061096 [CAATAAAACCATACTTAGATCATAAATCAATAGTATACTAGAGACTTTTTCTCATCTATCTCAAGTCAAAGAAAGAAATTAAGACGTATTCGTTTAAACTCATCAAACTTGAGTCAGGTTACATAAACACAGCCGATAAAAAACAGAGGTTAACAGCATAACAAAACGTCTAAAATTGATATCCATAAATCTTAATGTCAAAAAAGCGTGAGACTCACGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGGAGTGTGTAAACAACCAACTGATCCTTTAGATGATTATTAATTTTTTAAAATACTTGGACCTTTAAATTGACTTATTTAACATANCCAAAGCCTTCTTAATTGCAGTTGTCATTCTGTA TT ] [+] EMBL CD129876 [ CATACTTAGATCATAAATCAATAGTATACTAGAGACTTTTTTTCATCTATCTCACGTCAAAGAAAGAAATTAAGACGTATTCGTTTAAACTCATCAAACTTGAGTCAGGTTACATAAACACAGCCGATAAAAAACAGAGGTTAACAGCATAACAAAACGTCTAAAATTGATATCCATAAATCTTAATGTCAAAAAAGCGTGAGACTCACGATGAACCAACAGGACAAAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAAGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGATCCTTTAGATGATTATTAATTTTTT AAATACAT GAACTTTAAATTGACTTATTTAACATACCAAAAGCCTTCTTAGTTGCAGTTGTCATTC CTACTGATATAAAGAATGTACATAAAAATCAGGATTAGGATAAGTCGGTAAAGGAANNACAGTGAACAAATTAAATCATA] consensusID : consensus_10122#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [TGGTTTCATTACGGCCTTTANTTAGGCCTAGGATTATGGTACGTGTGTGGCCCGCAAGTGTCACCTCATTCACGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGATCCAAAAGCCTTCTTAGT] [+] EMBL AI395375 [TGGTTTCATTACGGCCTTTANTTAGGCCTAGGATTATGGTACGTGTGTGGCCCGCAAGTGTCACCTCATTCACGTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACCGAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATGACTATCGGCAGTGTGTAAACAACCAACTGATCCAAAAGCCTTCTTAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10122#0 GCGAAAAGTGACAGAAAAACTAAGTAATAAATTAGTGATTAATTAACAATACAGTAGAAC 60 consensus_10122#2 ------------------------------------------------------------ consensus_10122#1 ------------------------------------------------------------ consensus_10122#0 AACAATTTATACATCAAATGAAAGCTGGCAAATAGGGTAACATAATACAGTAATCCAGGT 120 consensus_10122#2 ------------------------------------------------------------ consensus_10122#1 ------------------------------------------------------------ consensus_10122#0 GTATAATAATTATGCAATCAAAATGCAAACAATAATTCTTCATAAGACAGTTCTAAAAGT 180 consensus_10122#2 ------------------------------------------------------------ consensus_10122#1 ------------------------------------------------------------ consensus_10122#0 TGCAGATTTCACAATATTTTCTTCGTTTTAACACATATGACGTGGAAAACACACAAATCC 240 consensus_10122#2 ------------------------------------------------------------ consensus_10122#1 ------------------------------------------------------------ consensus_10122#0 AGAATAATAACAATTCTTTGTGAGTCTTTATTGTAAGCGCCCACTTTCTTGATTACAACT 300 consensus_10122#2 ------------------------------------------------------------ consensus_10122#1 -------------------------------------------------------CAA-- 3 consensus_10122#0 TAATGTGTTATTTACTATCCTCATAAGTAGTA-GCTTCGGTCTGTTTCTCATTCAATTCC 359 consensus_10122#2 ------------------------------------------------------------ consensus_10122#1 TAAAACCATACTTAGATCATAAATCAATAGTATACTAGAGACTTTTTCTCATCTATCTC- 62 consensus_10122#0 TGAAGTCGATTACTTAACTTTTCTGAAAAGCTATGTCGAAATAATGGGCTTCGAA-CAGA 418 consensus_10122#2 ------------------------------------------------------------ consensus_10122#1 --AAGTCAAAGAAAGAAATTA--AGACGTATTCGTTTAAACTCATCAAACTTGAGTCAGG 118 consensus_10122#0 TAACA-GAGCGTAGATTGTTTCATAATAATCTTCATGGTCTA-CAGAGTGTATTACAGAA 476 consensus_10122#2 ------------------------------------------------------------ consensus_10122#1 TTACATAAACACAGCCGATAAAAAACAGAGGTTAACAGCATAACAAAACGTCT---AAAA 175 consensus_10122#0 TAGGAATCATCAACTGACTGTTTTCTGACTTCATCA----TAAGATGAACCAACAGGACA 532 consensus_10122#2 --------------------------------------------TGGTTTCATTACGGCC 16 consensus_10122#1 TTGATATCCATAAATCTTAATGTCAAAAAAGCGTGAGACTCACGATGAACCAACAGGACA 235 * ** * * * consensus_10122#0 AAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAA 592 consensus_10122#2 T--TTANTTAGGCCTAGGATTATGGTACGTGTG-TGGCCCGCAAGTGTCACCTCATTCAC 73 consensus_10122#1 AAATCCTTTGACGCTAATTTCAACACACATTTTCTCCCCCTCCAATGTAGTCAGATTCAA 295 * ** *** * * ** * * * *** * * *** * ***** consensus_10122#0 GTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACC 652 consensus_10122#2 GTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACC 133 consensus_10122#1 GTACGCTAATGTGTCCGTAAAGGGCAGAGAATCGGATGCTAAGCATATTTCTTTTACACC 355 ************************************************************ consensus_10122#0 GAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATG 712 consensus_10122#2 GAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATG 193 consensus_10122#1 GAACCCCACTTCAGCTATAGCAGCTTTAGCCTCAATGGAACATAATTTCACATCTTCATG 415 ************************************************************ consensus_10122#0 ACTATCGGCAGTGTGTAAACAACCAACTGATCCAAAAGCC--TTCTTAGTTGCAGTTGTC 770 consensus_10122#2 ACTATCGGCAGTGTGTAAACAACCAACTGATCCAAAAGCC--TTCTTAGT---------- 241 consensus_10122#1 ACTATCGGGAGTGTGTAAACAACCAACTGATCCTTTAGATGATTATTAATTTT--TTAAA 473 ******** ************************ ** ** *** * consensus_10122#0 ATTCCTATGTATTT---------------------------------------------- 784 consensus_10122#2 ------------------------------------------------------------ consensus_10122#1 ATACTTGGACCTTTAAATTGACTTATTTAACATANCCAAAGCCTTCTTAATTGCAGTTGT 533 consensus_10122#0 ------------------------------------------------------------ consensus_10122#2 ------------------------------------------------------------ consensus_10122#1 CATTCTGTATTATATAAAGAATGTACATAAAAATCAGGATTAGGATAAGTCGGTAAAGGA 593 consensus_10122#0 ------------------------- consensus_10122#2 ------------------------- consensus_10122#1 ANNACAGTGAACAAATTAAATCATA 618 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||