These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1295 fasta sequence [GAGCCTTATTCGGCACCAGTGTACACGCTACATGTTTTCGGGGCGGGTTCTGGGCGCTTTTATGTTTAGTGTTGGGTTTTTGTGTGGATATTATTTTCATATTCTTCATCTAAAGTACCTTCGTAAAAAGCAAAACTTCTTCCAGAACCGTCTCAGAGA-CGTTGAAAA-CAAACTCAAG--AGTTACTAACCA--TCTAGCCTTACAACAACCTTAAGAAGGTCGACTGTTACTCGTCTGCTGATGTCCTCTCAAGTTAAAGAAGATTTATATGGTGTATCATGGTCTAATCCAGCATGGAGTCACTTCCTTTGCTCGGCAAACGTTCTCGACTATTTCTGCGACCTTTCCAATCCTTTTTATGATAGGCAGTGCAATAATGAGGTTATTCGAATGCAAAGACTCCATCCTGAGCAGCTCTTGTGTATGACAGGTATTGAGTTTTATCTTCATCACGCTCAAGAACCTATACTGTTCATAATAC-GAAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGCAATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA-TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGCGACAGTTACTTCTGCAGTTAACGCGAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGCATCTTCTATAAAGGAAGAAAACCTTCAGATCAACTGCAATTCTCCAGCTAAATTACCTACAAGGCTGCCTACATTACCCGGTGTTTCTGTTGTCCCTGGACCATCACCAAGCACTTCAACGCAACCATCACTGCCTGTAGATCGAAAACCTCGTGTTTAACATGTTTTTAGTTTCTTCAATTGATACTGTTAAAGGCTTGACACAAATATGGTTTGGTATAACACTATTTTTATTTCGATAAGTTTACTTA-GCC-ATCCAAACTTGATGTACACTG-AAGTCTTGTTTTACTTACTAATGTG-AAATTATTGACTTTTCTTGTTTATATATATAGTTT] [+] EMBL CD081503 [GAGCCTTATTCGGCACCAGTGTACACGCTACATGTTTTCGGGGCGGGTTCTGGGCGCTTTTATGTTTAGTGTTGGGTTTTTGTGTGGATATTATTTTCATATTCTTCATCTAAAGTACCTTCGTAAAAAGCAAAACTTCTTCCAGAACCGTCTCAGAGA CGTTGAAAA CAAACTCAAG AGTTACTAACCA TCTAGCCTTACAACAACCTTAAGAAGGTCGACTGTTACTCGTCTGCTGATGTCCTCTCAAGTTAAAGAAGATTTATATGGTGTATCATGGTCTAATCCAGCATGGAGTCACTTCCTTTGCTCGGCAAACGTTCTCGACTATTTCTGCGACCTTTCCAATCCTTTTTATGATAGGCAGTGCAATAATGAGGTTATTCGAATGCAAAGACTCCATCCTGAGCAGCTCTTGTGTATGACAGGTATTGAGTTTTATCTTCATCACGCTCAAGAACCTATACTGTTCATAATAC GACAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTTAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGCTTATTG ] [+] EMBL CD061090 [ CGCTACATGTTTTCGGGGCGGGTTTTGGGCGCTTTTATGTTTAGCGTTGGGTTTTTGTGTGGATATTATTTTCATATTCTTCATCTAAAGTACCTTCGTAAAAAGCAAAACTTCTTCCAGAACCGTCTCAGAGA CGTTGAAAA CAAACTCAAG AGTTACTAACCA CCTAGCCTTACAACAACCTTAAGAAGGTCGACTGTTACTCGTCTGCTGATGTCCTCTCAAGTTAAAGAAGATTTATATGGTGTATCATGGTCTAATCCAGCATGGAGTCACTTCCTTTGCTCGGCAAACGTT ] [+] EMBL CD082027 [ cGAGACCGTTGAAAACCAAACTCAAGAAAGTTACTAACCANNTCTAGCCTTACAACAACCTTAAGAAGGTCGACTGTTACTCGTCTGCTGATGTCCTCTCAAGTTAAAGAAGATTTATATGGTGTATCATGGTCTAATCCAGCATGGAGTCACTTCCTTTGCTCGGCAAACGTTCTCGACTATTTCTGCGACCTTTCCAATCCTTTTTATGATAGGCAGTGCAATAATGAGGTTATTCGAATGCAAAGACTCCATCCTGAGCAGCTCTTGTGTATGACAGGTATTGAGTTTTATCTTCATCACGCTCAAGAACCTATACTGTTCATAATAC GAAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGCAATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCANATTTA TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAA ] [+] EMBL CD190280 [ gTCCTGCGCAGCTCTTGAGTATGACAGGTATTGAGTTTTATCTTCATCACGCTCAAGAACCTATACTGTTCATAATACAGAAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGCAATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAGACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTATCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCT ] [-] EMBL CD069314 [ ATTGACTTTCATCTTCATCACGCTCAAGAACCTATACTGTTCATAATAC GAAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGCAATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTACTTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGCGACAGTTACTTCTGCAGTTAACGCGAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGCAT ] [+] EMBL CD122851 [ ATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCAAAGAACAGATACCCTACCTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTC ] [-] EMBL CD122769 [ TCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAACCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCGAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCA ] [+] EMBL CD170706 [ TTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGCGACAGTTACTTCTGCAGTTAACGCGAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGCATCTTCTATAAAGGAAGAAAACCTTCAGATCAACTGCAATTCTCCAGCTAAATTACCTACAAGGCTGCCTACATTACCCGGTGTTTCTGTTGTCCCT ] [+] EMBL CD170691 [ TTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGCGACAGTTACTTCTGCAGTTAACGCGAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGCATCTTCTATNAAGGAAGAAAACCTTCAGATCAACTGCAATTCTCCAGCTAAATTACCTACAAGGCTGNCTACATTAACCGGTGTTTCTGTTGTCCCT ] [-] EMBL CD075327 [ TAAAGAACCAGATCAAACTTATGCANAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGCGACAGTTACTTCTGCAGTTAACGCGAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGCATCTTCTATAAAGGAAGAAAACCTTCAGATCAACTGCAATTCTCCAGCTAAATTACCTACAAGGCTGCCTACATTACCCGGTGTTTCTGTTGTCCCTGGACCATCACCAAGCACTTCAACGCAACCATCACTGCCTGTAGATCGAAAACCTCGTGTTTAACATGTTTTTAGTTTCTTCAATTGATACTGTTAAAGGCTTGACACAAATATGGTTTGGTATAACACTATTTTTATTTCGATAAGTTTACTTA GCC ATCCAAACTTGATGTACACTG AAGTCTTGTTTTACTTACTAATGTG AAATTATTGACTTTTCTTGTTTATATATATAGTTT] [+] EMBL CD084894 [ GAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGCGACAGTTACTTCTGCAGTTAACGCAAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGCATCTTCTATAAAGGAAGAAAACCTTCAGATCAACTGCAATTCTCCAGCTAAATTACCTACAAGGCTGCCTACATTACCCGGTGTT ] [+] EMBL SM869 [ TTCGATAAGTTTACTTAGGCCAATCCAAACTTGATGTACACTGNAAGTCTTGTTTTACTTACTAATGTGAAAATTATTGACTTTTCTTGTTT ] consensusID : consensus_10125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [CGGTCCGAGGGAAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGCAATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCANNATCTCAATCTACCTCANATACNTGAAGAGANT] [+] EMBL CD077738 [CGGTCCGAGGGAAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGCAATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCANNATCTCAATCTACCTCANATACNTGAAGAGANT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10125#0 GAGCCTTATTCGGCACCAGTGTACACGCTACATGTTTTCGGGGCGGGTTCTGGGCGCTTT 60 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 TATGTTTAGTGTTGGGTTTTTGTGTGGATATTATTTTCATATTCTTCATCTAAAGTACCT 120 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 TCGTAAAAAGCAAAACTTCTTCCAGAACCGTCTCAGAGACGTTGAAAACAAACTCAAGAG 180 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 TTACTAACCATCTAGCCTTACAACAACCTTAAGAAGGTCGACTGTTACTCGTCTGCTGAT 240 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 GTCCTCTCAAGTTAAAGAAGATTTATATGGTGTATCATGGTCTAATCCAGCATGGAGTCA 300 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 CTTCCTTTGCTCGGCAAACGTTCTCGACTATTTCTGCGACCTTTCCAATCCTTTTTATGA 360 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 TAGGCAGTGCAATAATGAGGTTATTCGAATGCAAAGACTCCATCCTGAGCAGCTCTTGTG 420 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 TATGACAGGTATTGAGTTTTATCTTCATCACGCTCAAGAACCTATACTGTTCATAATACG 480 consensus_10125#1 ----------------------------------------------CGGTCCGAGG---G 11 * ** * * consensus_10125#0 AAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAA 540 consensus_10125#1 AAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAA 71 ************************************************************ consensus_10125#0 CGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGC 600 consensus_10125#1 CGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGC 131 ************************************************************ consensus_10125#0 AATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTC 660 consensus_10125#1 AATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTC 191 ************************************************************ consensus_10125#0 AGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGA 720 consensus_10125#1 AGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGA 251 ************************************************************ consensus_10125#0 TCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGC 780 consensus_10125#1 TCAAACTTATGCANNATCTCAATCTACCTCANATACNTGAAGAGANT------------- 298 ************* **************** **** ****** * consensus_10125#0 AAATTTATTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCC 840 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 CGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGC 900 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 GACAGTTACTTCTGCAGTTAACGCGAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGC 960 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 ATCTTCTATAAAGGAAGAAAACCTTCAGATCAACTGCAATTCTCCAGCTAAATTACCTAC 1020 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 AAGGCTGCCTACATTACCCGGTGTTTCTGTTGTCCCTGGACCATCACCAAGCACTTCAAC 1080 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 GCAACCATCACTGCCTGTAGATCGAAAACCTCGTGTTTAACATGTTTTTAGTTTCTTCAA 1140 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 TTGATACTGTTAAAGGCTTGACACAAATATGGTTTGGTATAACACTATTTTTATTTCGAT 1200 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 AAGTTTACTTAGCCATCCAAACTTGATGTACACTGAAGTCTTGTTTTACTTACTAATGTG 1260 consensus_10125#1 ------------------------------------------------------------ consensus_10125#0 AAATTATTGACTTTTCTTGTTTATATATATAGTTT 1295 consensus_10125#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||