These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1495 fasta sequence [TCACCTTATACAACAAGTAGTAAAGAAGAGGTTAATACTGCTCCTCCAGACGATGCCAGTTTCTTGCCACCTAGTCGCCATTTAGCTTCCCTACTTCATATGCTGGCTGACTCTCGTGTTTTAAGTGTTGGAGAGTTAGACGAGATCACTGTCTTTATCCAGGAGCGAAAGCGTCGTCTAGAAGGCCGACGAAATACCAACAGTGATGCCGGTGCATGCAGTGAAAATACAGCTGAGCTCAAGTCAAGAATTTTAAGCATGCTTTATCCTCAGTCTGTTAGCTCTACTGTAACTACAGACACTGCTTCTTCCAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACTAGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGATACGTTAATGTCATATCCTTCAAACTCTATGCCTCAAACTTCAACGCAAAAGTCACATAGTGCTATGGATACACAAAATATGCAATCTAAGAACTCTTTTCGCAACAGTATAAAGCCGCATTCTTCATTAGCGATTACTGCATATCCACCCAGTTGTATGAAACAACCTACCAGCTGGAGCTATGAAGATAATGGTTTTCGACCAAGTCGACCACTCATTTCCAATGACTTGAGTCAGCATGTCCCTTATGGACAGCATACCAGACCTAACATGA-TC----CAGCAGCGTGAATATCCCAGTGACGAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCTGAATTCGAAGTAAATGAACCAG-TTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGATTCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAACAACCTGTAGATCTTATGTCTACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATATAAATATTCTCAAGCTACCCCCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAAAGAATAACCGGTGGAAGTTCATCCTATAACAATTACAATTATCAATCATTTGGATCGCATCAGCCGAATAATTTGAATCTTCATACCCAATTTTATGGTTATCCCAATCCATCTTCATTTTATTAGCACTTCTACTAGTAAAATCTGTGTCCTGTAAGATTAGTTCAGTTTTTTTCAACATATTTACATTTGAACATATTTTGCTAAATGTTATTGTAATTAATTTTTTAACACAAAGTGCTCATATCAACTTTTTTGGGAAGATGAAGAAGGCAAAGAAGATACAAAAAAACCTACATAATTTTCTTTCCATTTAGAGAATGGGTTGATTTTTTCAGTGTTTGTGTTGTATCACGTCATCCTGTATTGTTAATTAGAATTCATCATTTTCACTATCTTTGGCTAAAATAACAACATA] [+] EMBL CD122257 [TCACCTTATACAACAAGTAGTAAAGAAGAGGTTAATACTGCTCCTCCAGACGATGCCAGTTTCTTGCCACCTAGTCGCCATTTAGCTTCCCTACTTCATATGCTGGCTGACTCTCGTGTTTTAAGTGTTGGAGAGTTAGACGAGATCACTGTCTTTATCCAGGAGCGAAAGCGTCGTCTAGAAGGCCGACGAAATACCAACAGTGATGCCGGTGCATGCAGTGAAAATACAGCTGAGCTCAAGTCAAGAATTTTAAGCATGCTTTATCCTCAGTCTGTTAGCTCTACTGTAACTACAGACACTGCTTCTTCCAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACTAGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGATACGTT ] [+] EMBL CD183078 [ GAGAGTTAGACGAGATCACTGTCTTTATCCAGGAGCGGAAGCGTCGTCTAGAAGGCCGACGAAATACCAACAGTGATGCCGGTGCATGCAGTGAAAATACAGCTGAGCTCAAGTCAAGAATTTTAAGCATGCTTTATCCTCAGTCTGTTAGCTCTACTGTAACTACAGACACTGCTTCTTCCAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACTAGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCC ] [-] EMBL CD170731 [ ACAGCTGAGCTCAAGTCAAGAATTTTAAGCATGCTTTATCCTCAGTCTGTTAGCTCTACTGTAACTACAGACACTGCTTCTTCCAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACTAGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGATACGTTAATGTCATATCCTTCAAACTCTATGCCTCAAACTTCAACGCAAAAGTCACATAGTGCTATGGATACACAAAATATGCAATCTAAGAACTCTTTTCGCAACAGTATAAAGCCGCATTCTTCATTAGCGATTACTGCATATCCACCCAGTTGTATGAAACAACCTACCAGCTGGAGCTATGAAGATAATG ] [-] EMBL CD170701 [ AAGCATGCTTTATCCTCAGTCTGTTAGCTCTACTGTAACTACAGACACTGCTTCTTCCAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACTAGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGATACGTTAATGTCATATCCTTCAAACTCTATGCCTCAAACTTCAACGCAAAAGTCACATAGTGCTATGGATACACAAAATATGCAATCTAAGAACTCTTTTCGCAACAGTATAAAGCCGCATTCTTCATTAGCGATTACTGCATATCCACCCAGTTGTATGAAACAACCTACCAGCTGGAGCTATGAAGATAATG ] [+] EMBL CD111772 [ tacccggTTCTTACAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACTAGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGATACGTTAATGTCATATCCTTCAAACTCTATGCCTCAAACTTCAACGCAAAAGTCACATAGTGCTATGGATACACAAAATATGCAATCTAAGAACTCTTTTCGCAACAGTATAAAGCCGCATTCTTCATTAGCGATTACTGCATATCCACCCAGTTGTATGAAACGACCTACCAGCTGGAGCTATGAAGATAATGGTTTTCGACCAAGTCGACCACTCATTTCCAATGACTTGAGTCAGCATGTCCCTTATGGACAGCATACCAGACCTAACATGA TC CAGCAGCGTGAATATCCCAGTGACGAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCTGAATTCGAAGTACATGAACCAG TTCTTGATTCCAATGAAGAG TCACAGAAGAAAGTGCTTTTCC CGTTGGCCCA GAGAAAACGAAAAAA CGCGGTgggga ] [+] EMBL CD136189 [ CAAGATTTAACAGCTACTGGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGATACGTTAATGTCATATCCTTCAAACTCTATGCCTCAAACTTCAACGCAAAAGTCACATAGTGCTATGGATACACAAAATATGCAATCTAAGAACTCTTTTCGCAACAGTATA ] [+] EMBL CD083066 [ TTCATTAGCGATTACTGCATATCCACCCAGTTGTATGAAACAACCTACCAGCTGGAGCTATGAAGATAATGGTTTTCGACCAAGTCGACCACTCATTTCCAATGACTTGAGTCAGCATGTCCCTTATGGACAGCATACCAGACCTAACATGA TC CAGCAGCGTGAATATCCCAGTGACGAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCTGAATTCGAAGTAAATGAACCAG TTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGATTCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAACAACCTGTAGATCTTATGTCTACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATATAAATATTCTCAAGCTACCCCCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAA ] [+] EMBL AI740296 [ CATATCCACCCAGTTGTATGAAACAACCTACCAGCTGGAGCTATGAAGATAATGGTTTTCGACCAAGTCGACCACTCATTTCCAATGACTTGAGTCAGCATGTCCCTTATGGACAGCATACCAGACCTAACATGACTCAGCACAGTAGCGTGAATATCCCAGTGACGAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCTGAATTCGAAGTAAATGAACCAG TTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCAAGGTTGGCC ] [-] EMBL CD141019 [ GAGGTGCTTATCACTCTGAATTCGAAGTAAATG ACCAGTTTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGATTCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAACAACCTGTAGATCTTATGTCTACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATATAAATATTCTCAAGCTACCCCCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAAAGA ] [+] EMBL CD077482 [ gaggATCACTCTGAATTCGAAGTAAATGAACCAG TTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGATTCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAACAACCTGTAGATCTTATGTCTACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATATAAATATTCTCAAGCTACCCCCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAAAGAATAACCGGTGGAAGTTCATCCTATAACAATTACAATTATCAATCATTTGGATCGCATCAGCCGAAT ] [-] EMBL CD076639 [ CTTATGTCTACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATATAAATATTCTCAAGCTACCCCCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAAAGAATAACCGGTGGAAGTTCATCCTATAACAATTACAATTATCAATCATTTGGATCGCATCAGCCGAATAATTTGAATCTTCATACCCAATTTTATGGTTATCCCAATCCATCTTCATTTTATTAGCACTTCTACTAGTAAAATCTGTGTCCTGTAAGATTAGTTCAGTTTTTTTCAACATATTTACATTTGAACATATTTTGCTAAATGTTATTGTAATTAATTTTTTAACACAAAGTGCTCATATCAACTTTTTTGGGAAGATGAAGAAGGCAAAGAAGATACAAAAAAACCTACATAATTTTCTTTCCATTTAGAGAATGGGTTGATTTTTTCAGTGTTTGTGTTGTATCACGTCATCCTGTATTGTTAATTAGAATTCATCATTTTCACTATCTTTGGCTAAAATAACAACATA] [-] EMBL CD143164 [ TACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATATAAATATTCTCAAGCTACCCNCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAAAGAATAACCGGTGGAAGTTCATCCTATAACAATTACAATTATCAATCATTTGGATCGCATCAGCCGAATAATTTGAATCTTCATACCCAATCTTATGGTTATCCCAATCCATCTTCATTTTATTAGCACTTCTACTAGTAAAATCTGTGTCCTGTAAGATTAGTTCAGTTTTTTTCAACATATTTACATTTGAACATATTTTGCTAAATGTTATTGTAATTAATTTTTTAACACAAAGTGCTCATA ] consensusID : consensus_10145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [CGGCACGAGGCTTATGGACAGCATACCAGACCTAACATGATCCAGCAGCGTGAATATCCCAGTGACGAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCTGAATTCGAAGTAAATGAACCAGTTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGATTCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAACAACCTGTAGATCTTATGTCTACGGGAGTTCATCCAGTCGGTACTGTAGCCGAGCATATAAATATTCTCAA] [+] EMBL CD078002 [CGGCACGAGGCTTATGGACAGCATACCAGACCTAACATGATCCAGCAGCGTGAATATCCCAGTGACGAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCTGAATTCGAAGTAAATGAACCAGTTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGATTCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAACAACCTGTAGATCTTATGTCTACGGGAGTTCATCCAGTCGGTACTGTAGCCGAGCATATAAATATTCTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10145#0 TCACCTTATACAACAAGTAGTAAAGAAGAGGTTAATACTGCTCCTCCAGACGATGCCAGT 60 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 TTCTTGCCACCTAGTCGCCATTTAGCTTCCCTACTTCATATGCTGGCTGACTCTCGTGTT 120 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 TTAAGTGTTGGAGAGTTAGACGAGATCACTGTCTTTATCCAGGAGCGAAAGCGTCGTCTA 180 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 GAAGGCCGACGAAATACCAACAGTGATGCCGGTGCATGCAGTGAAAATACAGCTGAGCTC 240 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 AAGTCAAGAATTTTAAGCATGCTTTATCCTCAGTCTGTTAGCTCTACTGTAACTACAGAC 300 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 ACTGCTTCTTCCAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACT 360 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 AGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGAT 420 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 ACGTTAATGTCATATCCTTCAAACTCTATGCCTCAAACTTCAACGCAAAAGTCACATAGT 480 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 GCTATGGATACACAAAATATGCAATCTAAGAACTCTTTTCGCAACAGTATAAAGCCGCAT 540 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 TCTTCATTAGCGATTACTGCATATCCACCCAGTTGTATGAAACAACCTACCAGCTGGAGC 600 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 TATGAAGATAATGGTTTTCGACCAAGTCGACCACTCATTTCCAATGACTTGAGTCAGCAT 660 consensus_10145#1 ------------------------------------------------------CGGCAC 6 * *** consensus_10145#0 GTCCCTTATGGACAGCATACCAGACCTAACATGATCCAGCAGCGTGAATATCCCAGTGAC 720 consensus_10145#1 GAGGCTTATGGACAGCATACCAGACCTAACATGATCCAGCAGCGTGAATATCCCAGTGAC 66 * ******************************************************** consensus_10145#0 GAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCT 780 consensus_10145#1 GAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCT 126 ************************************************************ consensus_10145#0 GAATTCGAAGTAAATGAACCAGTTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCT 840 consensus_10145#1 GAATTCGAAGTAAATGAACCAGTTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCT 186 ************************************************************ consensus_10145#0 TATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGAT 900 consensus_10145#1 TATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGAT 246 ************************************************************ consensus_10145#0 TCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAA 960 consensus_10145#1 TCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAA 306 ************************************************************ consensus_10145#0 CAACCTGTAGATCTTATGTCTACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATAT 1020 consensus_10145#1 CAACCTGTAGATCTTATGTCTACGGGAGTTCATCCAGTCGGTACTGTAGCCGA-GCATAT 365 ************************* ************************** ****** consensus_10145#0 AAATATTCTCAAGCTACCCCCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAAAGA 1080 consensus_10145#1 AAATATTCTCAA------------------------------------------------ 377 ************ consensus_10145#0 ATAACCGGTGGAAGTTCATCCTATAACAATTACAATTATCAATCATTTGGATCGCATCAG 1140 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 CCGAATAATTTGAATCTTCATACCCAATTTTATGGTTATCCCAATCCATCTTCATTTTAT 1200 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 TAGCACTTCTACTAGTAAAATCTGTGTCCTGTAAGATTAGTTCAGTTTTTTTCAACATAT 1260 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 TTACATTTGAACATATTTTGCTAAATGTTATTGTAATTAATTTTTTAACACAAAGTGCTC 1320 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 ATATCAACTTTTTTGGGAAGATGAAGAAGGCAAAGAAGATACAAAAAAACCTACATAATT 1380 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 TTCTTTCCATTTAGAGAATGGGTTGATTTTTTCAGTGTTTGTGTTGTATCACGTCATCCT 1440 consensus_10145#1 ------------------------------------------------------------ consensus_10145#0 GTATTGTTAATTAGAATTCATCATTTTCACTATCTTTGGCTAAAATAACAACATA 1495 consensus_10145#1 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||