These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 504 fasta sequence [ACGCAGTACGGTATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCGGACAGTTTTTATTT-AGAAGAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATGGGC-TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGTGATAAACCACCAAA] [+] EMBL BF937028 [ACGCAGTACGGTATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCGGACAGTTTTTATTT AGAAAAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACTAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTATTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTA ] [+] EMBL BF936879 [ AGTTTTTATTT AAAAAAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGTGATAAAC ] [-] EMBL CD083425 [ TTTTATTTNAGAAGAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGc ] [-] EMBL AI764798 [ TATTT AGAAGAAAAATCCGAGCAGTTTACCACCCAGGGGTTTCCGATGGGCTTTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGCCCATTCAGCTGTACTACAATCTT ] [-] EMBL CD161131 [ ATTT AGAAGAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACCTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTCCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGCACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGTGATAAACCACCAAA] [-] EMBL CD135687 [ GAAGAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGTGATAAACCACCAAA] [-] EMBL CD063522 [ GAGCAGTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGAAGAAgggtacc ] [-] EMBL CD181632 [ GTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTC ] [-] EMBL CD191019 [ TACAAGATAGCCAAATTGGCGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTT ] [+] EMBL CD141604 [ GAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTG ] [-] EMBL CD132738 [ AGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGTGATAAACCACCAAA] [-] EMBL CD133315 [ TCTCAACGAAGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGTGATAAACCACCAAA] consensusID : consensus_10148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [CCCCCTCTCTGTCTCTCTGTGTTTCTCCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTAGAATAGGCGTGAAAC] [-] EMBL CD064396 [CCCCCTCTCTGTCTCTCTGTGTTTCTCCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTAGAATAGGCGTGAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10148#0 ACGCAGTACGGTATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTCCG 60 consensus_10148#1 ------------------------------------------------------------ consensus_10148#0 CCGGACAGTTTTTATTTAGAAGAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATG 120 consensus_10148#1 ------------------------------------------------------------ consensus_10148#0 GGCTTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACG 180 consensus_10148#1 ------------------------------------------------------------ consensus_10148#0 AGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGG 240 consensus_10148#1 ------------------------------------------------------------ consensus_10148#0 GCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACG 300 consensus_10148#1 ------------------------------------------------------------ consensus_10148#0 ATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAA 360 consensus_10148#1 -----------------CCCCCTCTC-TGTCTCTCTGTGTTTCTCCATCACTCGTAGAAA 42 * **** * * * * * * * *************** consensus_10148#0 TCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGC 420 consensus_10148#1 TCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGC 102 ************************************************************ consensus_10148#0 GTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTC 480 consensus_10148#1 GTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTA 162 *********************************************************** consensus_10148#0 GAATAGGCGTGATAAACCACCAAA 504 consensus_10148#1 GAATAGGCGTGAAAC--------- 177 ************ * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||