cluster # 10148

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Schistosoma mansoni
cluster # 10148 cluster # 10148 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10148#0 length = 504 sequences # 12

consensus_10148#1 length = 177 sequences # 1

consensusID : consensus_10148#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 504
fasta sequence

                              [ACGCAGTACGGTATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCGGACAGTTTTTATTT-AGAAGAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATGGGC-TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGTGATAAACCACCAAA]

[+] EMBL BF937028             [ACGCAGTACGGTATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCGGACAGTTTTTATTT AGAAAAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACTAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTATTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTA                                         ]
[+] EMBL BF936879             [                                                                  AGTTTTTATTT AAAAAAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGTGATAAAC       ]
[-] EMBL CD083425             [                                                                     TTTTATTTNAGAAGAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGc              ]
[-] EMBL AI764798             [                                                                        TATTT AGAAGAAAAATCCGAGCAGTTTACCACCCAGGGGTTTCCGATGGGCTTTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGCCCATTCAGCTGTACTACAATCTT                                                                                                                                                                                                                     ]
[-] EMBL CD161131             [                                                                         ATTT AGAAGAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACCTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTCCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGCACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGTGATAAACCACCAAA]
[-] EMBL CD135687             [                                                                               GAAGAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGTGATAAACCACCAAA]
[-] EMBL CD063522             [                                                                                           GAGCAGTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGAAGAAgggtacc                                                                                                                                          ]
[-] EMBL CD181632             [                                                                                                GTTTACCACCCAGGTGTTTCCGATGGGC TTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTC                                                                                                  ]
[-] EMBL CD191019             [                                                                                                                                                                 TACAAGATAGCCAAATTGGCGAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTT                                                                                                ]
[+] EMBL CD141604             [                                                                                                                                                                                     GAGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTG                                                                                                         ]
[-] EMBL CD132738             [                                                                                                                                                                                                                    AGTTTCCCGCACACCTATGTCAAACCTCGGGCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACGATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGTGATAAACCACCAAA]
[-] EMBL CD133315             [                                                                                                                                                                                                                                                                                                                                                                                                                               TCTCAACGAAGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTCGAATAGGCGTGATAAACCACCAAA]




>consensus_10148#0
ACGCAGTACGGTATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTCCG
CCGGACAGTTTTTATTTAGAAGAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATG
GGCTTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACG
AGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGG
GCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACG
ATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAA
TCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGC
GTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTC
GAATAGGCGTGATAAACCACCAAA

consensusID : consensus_10148#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [CCCCCTCTCTGTCTCTCTGTGTTTCTCCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTAGAATAGGCGTGAAAC]

[-] EMBL CD064396             [CCCCCTCTCTGTCTCTCTGTGTTTCTCCATCACTCGTAGAAATCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTAGAATAGGCGTGAAAC]




>consensus_10148#1
CCCCCTCTCTGTCTCTCTGTGTTTCTCCATCACTCGTAGAAATCGGATTATAACTTTTGA
TGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGCGTTGCATATTGACTTTAG
GGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTAGAATAGGCGTGAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10148#0      ACGCAGTACGGTATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTCCG 60
consensus_10148#1      ------------------------------------------------------------
                                                                                   

consensus_10148#0      CCGGACAGTTTTTATTTAGAAGAAAAATCCGAGCAGTTTACCACCCAGGTGTTTCCGATG 120
consensus_10148#1      ------------------------------------------------------------
                                                                                   

consensus_10148#0      GGCTTCCTCATGATCCATAATCCCACCACTTGTAGTAAGTACAAGATAGCCAAACTGACG 180
consensus_10148#1      ------------------------------------------------------------
                                                                                   

consensus_10148#0      AGAAGGCAATAAGTTCCTGGTCCACTTTTCAGTTTCCCGCACACCTATGTCAAACCTCGG 240
consensus_10148#1      ------------------------------------------------------------
                                                                                   

consensus_10148#0      GCTGATTACACCACATTTGTTTAGACGTCCATTCAGCTGTACTACAATCTTTCCAGAACG 300
consensus_10148#1      ------------------------------------------------------------
                                                                                   

consensus_10148#0      ATGGTCATCAACAATTTCAAATTCTCCTATATAACCCTTTCGTTGCATCACTCGTAGAAA 360
consensus_10148#1      -----------------CCCCCTCTC-TGTCTCTCTGTGTTTCTCCATCACTCGTAGAAA 42
                                        *    **** * * *  *  * *   * ***************

consensus_10148#0      TCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGC 420
consensus_10148#1      TCGGATTATAACTTTTGATGATGGCCGAATAAGGACCTGACGCTTCTTTCTTCTCTCAGC 102
                       ************************************************************

consensus_10148#0      GTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTC 480
consensus_10148#1      GTTGCATATTGACTTTAGGGCGTCAGCAAGTACGTTTAGCCTAACCATACTTTAGACTTA 162
                       *********************************************************** 

consensus_10148#0      GAATAGGCGTGATAAACCACCAAA 504
consensus_10148#1      GAATAGGCGTGAAAC--------- 177
                       ************ *