These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1516 fasta sequence [GCCAATGTGGTTAAGACCCAGTTATGTGTTGTTTAGAATCCCAGCCCACGGCGTCNTACCAGTCCCCGTGATAACTTCATTTGGTGGTAAACAGTAGCGTTCATTTTCAGTTGAGTCAGTACTTTCAACCCAGAGATGCGGTTGGGCGTGCCAGAGAAAATTATCCATAGATATTTTATGGTGATATTGAATATCTCCATTTTCTGCCATTTGATTTAATAAACAACTGTAATAGGATCTTAGTCGTTCACGTGATCTTTCCACAAGTAAATCCCATGATTCAATACA-TTTTTCACGAAGTATCACTGATCGTTTTACAGCTTCTAAATCTGGATCACTTATCCATAAACAAACAGATGGTATTTTTACTATACCATTATTTGTTTGCACTGTCCAAAAGTGTTGATCATCTTTATTCGATATAACGCGTACTTCTTCACCTTCTTTTAATTCATAATTTGGTCCTGTCAATGAAGTTAACATACGAGCCATAACTGGGCTAGCGGATTCTGTATTAGTACTCAGACCATCAATAACACCACCTAGTCTTAAGTGAACAGGAACAATACGTCGGCTTTCTTCAAGTAAATTGCCTGATCGACCCCATAAATGAATCATATGATTAAGATGTTCCCTCAATTCATTGGCCAAAATTGTACAGTTTTTCAAAGTTGCAGGTAATGCTCTTGTATTTCTCGGTTCTGTCATCCGTACACGTGCTTTCAAACTGGCTTCAGCTTCATTAACTGCATGATGAAACTGATGGTATTCAGCGGCATTCCTAATGTGTACTTGACTTAATCGGGCCAATTGAGAAACATATGTCCAACAACTTTTCACATTACCAGTTAATTCCTTTTTCACATGAACTTCATCTTTTAACTCTTTAGGTGCACTTAGTTGTACAGAAGTTTCAGTGACATTTTCTGTTAGAACTGTAAATGAATTCTCCAATTGAGATATTGTTTCTAAGTAACGTAATGCCGATGTATTATTCTTCACATCATCACGAATCTCAGCTGCTGCTTCAGGTAAATGGGATTTTTGTGCACTCGATTGTTGAATATCTTTTTCTAGTTGTATAATTTTTTGTAATAATTCAGCTTGTCTAACACGTTCACTGTCAAGCGCTAAATGATTCACACCTATACATACACCACGTGCTTGACGCTCGAAATCAGTCAGTCGAGCTTGAAGACTTTCAGTAGCCATTATTTCCTAATGTATTATGAGTTGAATGTTAAATATTGAACAGAGGAATGATTCAAACAACAAAGAAGAATAAAAGCTACAGCTTGATTGATTGTAACGTATACGAATGTTGTTATTTGTTTATTGTTAAAATTTGACGCTAATATCAGTGTAGCTGAGCAGTAATCCCAGGACAATAATTAGTTATAGTCTTGTATCAATAAATATGTATAATAATTGAATGAATGAATTGAATAAAGTTAAGGAACAAACAAAAATGAACTAGATATAAATATTTCCTAATTATATGTAATAATATTACAAT] [-] EMBL CD150042 [GCCAATGTGGTTAAGACCCAGTTATGTGTTGTTTAGAATCCCAGCCCACGGCGTCNTACCAGTCCCCGTGATAACTTCATTTGGTGGTAAACAGTAGCGTTCATTTTCAGTTGAGTCAGTACTTTCAACCCAGAGATGCGGTTGGGCGTGCCAGAGAAAATTATCCATAGATATTTTATGGTGATATTGAATATCTCCATTTTCTGCCATTTGATTTAATAAACAACTGTAATAGGATCTTAGTCGTTCACGTGATCTTTCCACAAGTAAATCCCATGATTCAATACA TTTTTCACGAAGTATCACTGATCGTTTTACAGCCTCTca ] [+] EMBL CD168641 [ AATAAACAACTGCAATAGGATCTTAGTCGTTCACGTGATCTTTCCACAAGTAAATCCCATGATTCAATACA TTTTTCACGAAGTATCACTGATCGTTTTACAGCTTCTAAATCTGGATCACTTATCCATAAACAAACAGATGGTATTTTTACTATACCATTATTTGTTTGCACTGTCCAAAAGTGTTGATCATCTTTATTCGATATAACGCGTACTTCTTCACCTTCTTTTAATTCATAATTTGGTCCTGTCAATGAAGTTAACATACGAGCCATAACTGGGCTAGCGGATTCTGTATTAGTACTCAGACCATCAATAACACCACCTAGTCTTAAGTGAACAGGAACAATACGTCGGCTTTCTTCAAGTAAATTGCCTGATCGACCCCATAAATGAATCATATGATTAAGATGTTCCCTCAATTCATTGGCCAAAATTGTACAGTTTTTCAAAGTTGCAGGTAATGCTCTTGTATTTCTCGGTTCTGTCATCCGTACACGTGCTTTCAAACTGGCTTCAGCTTCATTAACTGCATGATGAAACTGATGGTATTCAGCGGCATTCCTAATGCGTACTTGACTTAATCGGGCCAATTGAGAAACATATGTCCAAC ] [+] EMBL CD129247 [ TAAACAACTGTAATAGGATCTTAGTCGTTCACGTGATCTTTCCACAAGTAAATCCCATGATTCAATACATTTTTTCACGAAGTATCACTGATCGTTTTACAGCTTCTAAATCTGGATCACTTATCCATAAACAAACAGATGGTATTTTTACTATACCATTATTTGTTTGCACTGTCCAAAAGTGTTGATCATCTTTATTCGATATAACGCGTACTTCTTCACCTTCTTTTAATTCATAATTTGGTCCTGTCAATGAAGTTAACATACGAGCCGTAACTGGGCTAGCGGATTCTGTATTAGTACTCAGACCATCAATAACACCACCTAGTCTTAAGTGAACAGGAACAATACGTCGGCTTTCTTCAAGTAAATTGCCTGATCGACCCCATAAATGAATCATATGATTAAGATGTTCCCTCAATTCATTGGCCAAAATTGTACAGTTTTTCAAAGTTGCAGGTAATGCTCTTGTATTTCTCGGTTCTGTCATCCGTACACGTGCTTTCAAACTGGCTTCAGCTTCATTAACTGCATGATGAAACTGATGGTATTCAGCGGCATTCCTAATGTGTACTTGACTTAATCGGGCCAATTGAGAAAC ] [+] EMBL CD064503 [ ttTAACGCGTACTTCTTCACCTTCTTTTAATTCATAATTTGGTCCTGTCAATGAAGTTAACATACGAGCCATAACTGGGCTAGCGGATTCTGTATTAGTACTCAGACCATCAATAACACCACCTAGCCTTAAGTGAACAGGAACAATACGTCGGCTTTCTTCAAGTAAATTGCCTGATCGACCCCATAAATGAATCATATGATTAAGATGCTCCCTCAATTCATTGGCCAAAATTGTACAGTTTTTCAAAGTTGCAGGTAATGCTCTCGCATTTCTCGGTTCTGCCATCCGCACACGTGCTTTCAAACTGGCTT ] [+] EMBL CD190445 [ TTAATTCATAATTTGGTCCTGTCAATGAAGTTAACATACGAGCCATAACTGGGCTAGCGGATTCTGTATTAGTACTCAGACCATCAATAACACCACCTAGTCTTAAGTGAACAGGAACAATACGTCGGCT ] [+] EMBL CD122802 [ CACGTGCTTTCAAACTGGCTTCAGCTTCATTAACTGCATGATGAAACTGATGGTATTCAGCGGCATTCCTAATGTGTACTTGACTTAATCGGGCCAATTGAGAAACATATGTCCAACAACTTTTCACATTACCAGTTAATTCCTTTTTCACATGAACTTCATCTTTTAACTCTTTAGGTGCACTTAGTTGTACAGAAGTTTCAGTGACATTTTCTGTTAGAACTGTAAATGAATTCTCCAATTGAGATATTGTTTCTAAGTAACGTAATGCCGATGTATTATTCTTCACATCATCACGAATCTCAGCTGCTGCTTCAGGTAAATGGGATTTTTGTGCACTCGATTGTTGAATATCTTTTTCTAGTTGTATAATTTTTTGTAATAATTCAGCTTGTCTAACACGTTCACTGTCAAGCGCTAAATGATTCACAC ] [-] EMBL SM138 [ TAGGTGCACTTAGTTGTACAGAAGTTTCAGTGACATTTTCTGTTAGAACTGTAAATGAATTCNCCAATTGAGATATTGTTTCTAAGTAACGTAATGCCGATGTATTATTCTTCACATCATCACGAATCTCAGCTGCTGCTTCAGGTAAATGGGAGTTTTGTGCACTCGATTGNTGAATACCGNNNTCCAGTTGTATAATNTTTTGTAATAATTCAGCTTGTCTAACACGTTCACTGTCAAGCGCTAAATGATTCACACCTATACATACACCACGTGCTTGACGCTCGAAATCAGTCAGTCGAGCTTGAAGACTTTCAGTAGCCATTATTTCCTAATGTATTATGAGTTGAATGTTAAATATTGAACAGAGGAATGATTCAAAC ] [-] EMBL CD166626 [ ATCTTTTTCTAGTTGTATAATTTTTTGTAATAATTCAGCTTGTCTAACACGTTCACTGTCAAGCGCTAAATGATTCACACCTATACATACACCACGTGCTTGACGCTCGAAATCAGTCAGTCGAGCTTGAAGACTTTCAGTAGCCATTATTTCCTAATGTATTATGAGTTGAATGTTAAATATTGAACAGAGGAATGATTCAAACAACAAAGAAGAATAAAAGCTACAGCTTGATTGATTGTAACGTATACGAATGTTGTTATTTGTTTATTGTTAAAATTTGACGCTAATATCAGTGTAGCTGAGCAGTAATCCCAGGACAATAATTAGTTATAGTCTTGTATCAATAAATATGTATAATAATTGAATGAATGAATTGAATAAAGTTAAGGAACAAACAAAAATGAACTAGATATAAATATTTCCTAATTATATGTAATAATATTACAAT] [-] EMBL CD129716 [ GACGGTAGAAATCAGTCAGTCGAGCTTTAAGACTTTCAGTAGCCATTATTTCGTAATGTATTATGAGTTGAATGTTAAATATTGAACAGAGGAATGATTCTATCAACAAAGAAGAATAAAAACTACAGCTTGct ] consensusID : consensus_10149#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [CACATTACTAAACTGACTCCAAAATCTTCATCTNNTATGTAAATTAATCATTGTCACGTTAACTAAAATCGTCACTTAGAAAAGATTTTTTTCTCTATTTAAAGGAAGAAAGAAGAAAAATTATGCTAAAACTTACCTTTTTCACATGAACTTCATCTTTTAGCTCTTTAGGTGCACTTAGTTGTACAGAAGTTTCAGTGACATTTTCTGTTAGAACTGTAAATGAATTCTCCAATTGAGATATTGTTTCTAAGTAACGTAATGTCGATGTATTATTCTTCACAT] [-] EMBL CD111901 [CACATTACTAAACTGACTCCAAAATCTTCATCTNNTATGTAAATTAATCATTGTCACGTTAACTAAAATCGTCACTTAGAAAAGATTTTTTTCTCTATTTAAAGGAAGAAAGAAGAAAAATTATGCTAAAACTTACCTTTTTCACATGAACTTCATCTTTTAGCTCTTTAGGTGCACTTAGTTGTACAGAAGTTTCAGTGACATTTTCTGTTAGAACTGTAAATGAATTCTCCAATTGAGATATTGTTTCTAAGTAACGTAATGTCGATGTATTATTCTTCACAT] consensusID : consensus_10149#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence [TAAGAGGAGACTTCTTAAATCTCCTAGAAAATTATCCATAGCTATTTTATGCTGATATTGAATATCTCCATTTTCTGCCATTTGATTTAATAAACAACTGTAATAGGATCTTAGTCGTTCACGTGATCTTTCCACAAGTAAATCCCATGATTCAATACATTTTTCACGAAGTATCACTGATCGTTTTTCAGCTTCTCC] [-] EMBL CD150052 [TAAGAGGAGACTTCTTAAATCTCCTAGAAAATTATCCATAGCTATTTTATGCTGATATTGAATATCTCCATTTTCTGCCATTTGATTTAATAAACAACTGTAATAGGATCTTAGTCGTTCACGTGATCTTTCCACAAGTAAATCCCATGATTCAATACATTTTTCACGAAGTATCACTGATCGTTTTTCAGCTTCTCC] consensusID : consensus_10149#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 180 fasta sequence [AGTGTATTTATTGAACTGACCATGTGATGACTTAATA-GGA-GTACAAAAATAA-GGAATAATTAATNTCACACTCACATCACTGATCGTTTTACAGCTTCTAAATCTGGNCCACTTATCCATAAACAAACAGATGGTATTTTTACTATACCATTATTTGTTTGCACTGTCCAAAAGTGTTGA] [+] EMBL SM137 [AGTGTATTTATTGAACTGACCATGTGATGACTTAATA GGA GTACAAAAATAA GGAATAATTAATNTCACACTCACATCACTGATCGTTTTACAGCTTCTAAATCTGGNCCACTTATCCATAAACAAACAGATGGTATTTTTACTATACCATTATTTGTTTGCACTGTCCAAAAGTGTTGA] [+] EMBL SMW810 [AGTGTATTTATTGAACTGACCATGTGATGACTTAATAGGGAGGTACAAAAATAAGGGAATAATTAATATCACACTCACATCACTGATCGTTTTACAGCTTCTAAATNTGGATCACTTATCCATAAACAAACAGATGGTATTTTNACTATACCATTATTTGTTNGCACTGTCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10149#0 GCCAATGTGGTTAAGACCCAGTTATGTGTTGTTTAGAATCCCAGCCCACGGCGTCNTACC 60 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------CACATT 6 consensus_10149#0 AGTCCCCGTGATAACTTCATTTGGTGGTAAACAGTAGCGTTCATTTTCAGTTGAGTCAGT 120 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ACTAAACTGACTCCAAAATCTTCATCTNNTATGTAAATTAATCATTGTCACGTTAACTAA 66 consensus_10149#0 ACTTTCAACCCAGAGATGCGGTTGGGCGTGCCAGAGAAAATTATCCATAGATATTTTATG 180 consensus_10149#2 ---------TAAGAGGAGACTTCTTAAATCTCCTAGAAAATTATCCATAGCTATTTTATG 51 consensus_10149#3 -------------AGTGTATTTATTGAACTGACCATGTGATGACT--TAATAGGAGTACA 45 consensus_10149#1 AATCGTCACTTAGAAAAGATTTTTTTCTCTATTTAAAGGAAGAAA-GAAGAAAAATTATG 125 * * * * * * ** consensus_10149#0 GTGATATTGA--------ATATCTCCATTTTCTGCCATTTGATTTAATAAAC--AACTGT 230 consensus_10149#2 CTGATATTGA--------ATATCTCCATTTTCTGCCATTTGATTTAATAAAC--AACTGT 101 consensus_10149#3 AAAATAAGGA--------ATAATTAATNTCACACTCACATCACTGATCGTTT--TACAGC 95 consensus_10149#1 CTAAAACTTACCTTTTTCACATGAACTTCATCTTTTAGCTCTTTAGGTGCACTTAGTTGT 185 * * * * * * * * * * consensus_10149#0 AATAGGATCTTAGTCGT-TCACGTGATCTTTCCACAAGTAAATCCCATGATT-CAATACA 288 consensus_10149#2 AATAGGATCTTAGTCGT-TCACGTGATCTTTCCACAAGTAAATCCCATGATT-CAATACA 159 consensus_10149#3 TTCTAAATCTGGNCCAC-TT-----ATCCATAAACAAACAGATGGTATTTTTACTATACC 149 consensus_10149#1 ACAGAAGTTTCAGTGACATTTTCTGTTAGAACTGTAAATGAATTCTCCAATTGAGATATT 245 * * * * ** ** ** *** consensus_10149#0 TTTTTCACGAAGTATCACTGATCGTTTTACAGCTTCTAAATCTGGATCACTTATCCATAA 348 consensus_10149#2 TTTTTCACGAAGTATCACTGATCGTTTTTCAGCTTCTCC--------------------- 198 consensus_10149#3 ATTATTTGTTTGCACTGTCCAAAAGTGTTGA----------------------------- 180 consensus_10149#1 GTTTCTAAGTAACGTAATGTCGATGTATTATTCTTCACAT-------------------- 285 ** * * consensus_10149#0 ACAAACAGATGGTATTTTTACTATACCATTATTTGTTTGCACTGTCCAAAAGTGTTGATC 408 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 ATCTTTATTCGATATAACGCGTACTTCTTCACCTTCTTTTAATTCATAATTTGGTCCTGT 468 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 CAATGAAGTTAACATACGAGCCATAACTGGGCTAGCGGATTCTGTATTAGTACTCAGACC 528 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 ATCAATAACACCACCTAGTCTTAAGTGAACAGGAACAATACGTCGGCTTTCTTCAAGTAA 588 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 ATTGCCTGATCGACCCCATAAATGAATCATATGATTAAGATGTTCCCTCAATTCATTGGC 648 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 CAAAATTGTACAGTTTTTCAAAGTTGCAGGTAATGCTCTTGTATTTCTCGGTTCTGTCAT 708 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 CCGTACACGTGCTTTCAAACTGGCTTCAGCTTCATTAACTGCATGATGAAACTGATGGTA 768 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 TTCAGCGGCATTCCTAATGTGTACTTGACTTAATCGGGCCAATTGAGAAACATATGTCCA 828 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 ACAACTTTTCACATTACCAGTTAATTCCTTTTTCACATGAACTTCATCTTTTAACTCTTT 888 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 AGGTGCACTTAGTTGTACAGAAGTTTCAGTGACATTTTCTGTTAGAACTGTAAATGAATT 948 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 CTCCAATTGAGATATTGTTTCTAAGTAACGTAATGCCGATGTATTATTCTTCACATCATC 1008 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 ACGAATCTCAGCTGCTGCTTCAGGTAAATGGGATTTTTGTGCACTCGATTGTTGAATATC 1068 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 TTTTTCTAGTTGTATAATTTTTTGTAATAATTCAGCTTGTCTAACACGTTCACTGTCAAG 1128 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 CGCTAAATGATTCACACCTATACATACACCACGTGCTTGACGCTCGAAATCAGTCAGTCG 1188 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 AGCTTGAAGACTTTCAGTAGCCATTATTTCCTAATGTATTATGAGTTGAATGTTAAATAT 1248 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 TGAACAGAGGAATGATTCAAACAACAAAGAAGAATAAAAGCTACAGCTTGATTGATTGTA 1308 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 ACGTATACGAATGTTGTTATTTGTTTATTGTTAAAATTTGACGCTAATATCAGTGTAGCT 1368 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 GAGCAGTAATCCCAGGACAATAATTAGTTATAGTCTTGTATCAATAAATATGTATAATAA 1428 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 TTGAATGAATGAATTGAATAAAGTTAAGGAACAAACAAAAATGAACTAGATATAAATATT 1488 consensus_10149#2 ------------------------------------------------------------ consensus_10149#3 ------------------------------------------------------------ consensus_10149#1 ------------------------------------------------------------ consensus_10149#0 TCCTAATTATATGTAATAATATTACAAT 1516 consensus_10149#2 ---------------------------- consensus_10149#3 ---------------------------- consensus_10149#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||