These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 898 fasta sequence [CTCCAGGCCAANAATTTGGCACGAGGTTTAATCAAGCTGCAACAGTCGCAAAATGTTGTAAATAATACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAAGAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTCTGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTTGGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAAAGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACACTGATAAGGACCAGTGACACTATTTTCTTTATTTTCTCATAATGGCTT-CTTTTCTTTAAANTA-TGNCCGATATGTCAGTAAGTCATTTCAATC-AAGTGACTGGTCATATAANCTAATT] [+] EMBL CD081088 [CTCCAGGCCAANAATTTGGCACGAGGTTTAATCAAGCTGCAACAGTCGCAAAATGTTGTAAATAATACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAAGAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTCTGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTTGGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCANAGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACACTGATANGGGACAGTGACACTATTTTCTTTATTTTCTCATAATGGCTT CTTTTCTTTAAANTA TGNCCGATATGTCAGTAAGTCATTTCAATC AAGTGACTGGTCATATAANCTA ] [-] EMBL CD074911 [ TTGGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAAAGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACACTGATAAGGACCAGTGACACTATTTTCTTATTTTTCTCATAAT GCTTCCTTTTCTTTAAA TATTGTCCGATATGTCAGTAAGTCATTTCAATCAAAGTGACTGGTCATATAAACTAATT] [+] EMBL AI067607 [ TATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATTCTCTGGTATCCTATAACTATCCTCCGGTt ] [+] EMBL AI068255 [ AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAAAGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCANATAGAAACACTGATAAGGACC ] [+] EMBL AI067268 [ AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAAAGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACACTGATAAGG ] [+] EMBL AI067749 [ AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAAAGTTTCGGCCACGAATACCGAGGTTTTTAAC ] [+] EMBL AI067867 [ AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATACAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAAAGTTTCGGCCACGACTACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACACTGATAAGG ] [+] EMBL AI067117 [ AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGT ] [+] EMBL AI067457 [ AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCC ] [+] EMBL AI068036 [ AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATATTAATGGTCATTGTTTGGATCCTCTGGTA ] [+] EMBL AI067064 [ AACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGATCACTGGTGTTATTGGAATTTTTGTACACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGGATACATACTAGTG ] [+] EMBL CD149504 [ TGGTGTTATTGGAATGTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGATAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAACTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTCTGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTG ] consensusID : consensus_10170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 419 fasta sequence [CGAGGCTCATTACATCAAGGTCTTTAATCAGCTGCAACAGTCGCAAAATGTTGTAAATATACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAAGAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTCTGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTTGGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGAT] [+] EMBL CD083997 [CGAGGCTCATTACATCAAGGTCTTTAATCAGCTGCAACAGTCGCAAAATGTTGTAAATATACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAAGAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTCTGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTTGGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCTCAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACGAAGAT] [+] EMBL CD078168 [ ttTTCTAATGCACGAAAGACTCTTAGAAGAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTCTGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTTGGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGGTTCACGTATACGAACCACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10170#0 CTCCAGGCCAANAATTTGGCACGAGGTTTAATCAAGCTGCAACAGTCGCAAAATGTTGTA 60 consensus_10170#1 --CGAGGCTCATTACAT--CAAGGTCTTTAATCA-GCTGCAACAGTCGCAAAATGTTGTA 55 * **** * * * ** * ******** ************************* consensus_10170#0 AATAATACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAA 120 consensus_10170#1 AATA-TACAAGCTTCGTAATAATCTACTGATCTATTCTACTGCAATGAAGACTCTTAGAA 114 **** ******************************************************* consensus_10170#0 GAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTC 180 consensus_10170#1 GAACACAGGACGTCTTCGAAATCGAGAGAAACATAGTTGGAGAACCAGAAATAAAAAGTC 174 ************************************************************ consensus_10170#0 TGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTT 240 consensus_10170#1 TGATGTTGGATCTTGAAGACTGGTTCAGTTTAATAGTAAAATCTGAGAATATACTGAGTT 234 ************************************************************ consensus_10170#0 GGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGG 300 consensus_10170#1 GGAAAAATCCTCGATCAACATTGCTTGTAATATTTGCAATCACTATTTTGTTTTTGCTGG 294 ************************************************************ consensus_10170#0 TTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCT 360 consensus_10170#1 TTCACGTATACGAACCACCTATCCTGTTTGTTATGGGTTGTTCAGGATTGCTTTTAAGCT 354 ************************************************************ consensus_10170#0 CAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACG 420 consensus_10170#1 CAATAGATTACTTCGGACCTTTAGTTTTGTCTAGAATGTTCAATAAGCCTCCAAGTTACG 414 ************************************************************ consensus_10170#0 AAGATCACTGGTGTTATTGGAATTTTTGTAGACGTCTTGTCCACATGCGTCATGTACTGA 480 consensus_10170#1 AAGAT------------------------------------------------------- 419 ***** consensus_10170#0 TAAACTTCCTTGTTTTTGTGCATAGAGTTCGATATAGAAACGCGACTCTACATTTCTTAA 540 consensus_10170#1 ------------------------------------------------------------ consensus_10170#0 CTAGTTCATCTCTTTTGTGCATAGTTGGATTTGTTGGAATACATACTAGTGATTTGTGTC 600 consensus_10170#1 ------------------------------------------------------------ consensus_10170#0 TGGTTTATCTCTTAATACTCGTTTGCTTCATCGCACCAAATCTGCATCCTAAAGGAATAT 660 consensus_10170#1 ------------------------------------------------------------ consensus_10170#0 TAATGGTCATTGTTTGGATCCTCTGGTATCCTATAACTATCCTCCGGTCTTTTGCATCAA 720 consensus_10170#1 ------------------------------------------------------------ consensus_10170#0 AGTTTCGGCCACGAATACCGAGGTTTTTAACCCGGATCCTGCGTATATCAAATAGAAACA 780 consensus_10170#1 ------------------------------------------------------------ consensus_10170#0 CTGATAAGGACCAGTGACACTATTTTCTTTATTTTCTCATAATGGCTTCTTTTCTTTAAA 840 consensus_10170#1 ------------------------------------------------------------ consensus_10170#0 NTATGNCCGATATGTCAGTAAGTCATTTCAATCAAGTGACTGGTCATATAANCTAATT 898 consensus_10170#1 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||