These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1106 fasta sequence [GTTCTACTTTTTCAGTTGACCATAAGAAAGTGGTATATAAATTAGGCGATCAACCCCCACCTTTGGCTACTGAAAAAGTAGAACACATAATTACCAGTCAAGATTGTGACAGAAGTGATATCGTGTTAGTAGAGTCAGGTGAGTTCCTTGAGGAAGATCACGCTGATTGCTCCTCG--AAAGAACAAG-AATTTGGGTTGGATAAAGTTACTTGTTATC-AACAATTGGATATAGTTGATGACGAAGGAGCCTTAGTATTCGACAACGACCTTCCATCACCTCCGATTTCAGTTTGTGAAGAGTTACACAAAGAGGATACTGGGGAATTATCACCATTTCCTTTGACG-CATTCAGCAATTCCAGAAAATTGTATCAAATCCGAATTATCGTCAAATAACCAACCAGAAGCGATACCTGAATACTGTACAGATATTAAAATT-GGACAAATTGTGGGTGAAACTTTAGATACAATAAGTGATCATTACTTAGTCGAACCAACTAATTTT-TATTCAGATCC-CATTCCATCTACAAAGAACTTTACAGAAGAAGACGCTGAAAATTCACTAGAAGAGCCTACTGAAGAACAATTGAATAGTCAATCCGTTGACTACTTAGAGAAAACATATTGATATAGAGGTTCGAGTTGACCAACAGAACGACGTCGCTAGTATATTTGAACTGAAAGGCAAAACAAACACTGAAAAAGAATCAACAGAATCGCTTGACTT-TCAAGAAGAATCAATCAGTTCATTGAATCCTGAAAACGAGGCAACCGAACCATCTTACGTAGAGAAAGAATCCCCTACATTATCTACCAGTGAAAAACAAATTGATAAATCTTCTGATCTTGACGAAGAAATAACTAACCCGGTTTACACTGAGAAAGCAACAAACGTTCCTGGTAAATCAGAAAATTTTCAAACTTTTCTACCATCTGTTGAAATCTCGAATTCTTTAACATCTACTGAATTTTGTCCAGAAGAAGAA-GTAGTAGTAGTAGACGAGCACGGAAGAAATATTAGTTCTACAGTTGACGCTGAACTACTAGACGAAACACATTCTAGNNNNNNGTTCGCGCAGTCTGTAACATCATCAATACTAACCGACTC] [+] EMBL CD071580 [GTTCTACTTTTTCAGTTGACCATAAGAAAGTGGTATATAAATTAGGCGATCAACCCCCACCTTTGGCTACTGAAAAAGTAGAACACATAATTACCAGTCAAGATTGTGACAGAAGTGATATCGTGTTAGTAGAGTCAGGTGAGTTCCTTGAGGAAGATCACGCTGATTGCTCCTCG AAAGAACAAG AATTTGGGTTGGATAAAGTTACTTGTTATC AACAATTGGATATAGTTGATGACGAAGGAGCCTTAGTATTCGACAACGACCTTCCATCACCTCCGATTTCAGTTTGTGAAGAGTTACACAAAGAGGATACTGGGGAATTATCACCATTTCCTTTGACG CATTCAGCAATTCCAGAAAATTGTATCAAATCCGAATTATCGTCAAATAACCAACCAGAAGCGATACCTGAATACTGTACAGATATTAAAATT GGACAAATTGTGGGTGAAACTTTAGATACAATAAGTGATCATTACTTAGTCGAACCAACTAATTn ] [+] EMBL CD160029 [ cgggTCAGTTGACCATAAGAAAGTGGTATATAAATTAGGCGATCAACCCCCACCTTTGGCTACTGAAAAAGTAGAGCAAATAATTACCAGTCAAGATTGTGACAGAAGTGATATCGTGTTAGTAGAGTCAGGTGAGTTCCTTGAGGAAGATCACGCTGATTGCTCCTCG AAAGAACAAG AATTTGGGTTGGATAAAGTTACTTGTTATC AACAATTGGATATAGTTGATGACGAAGGAGCCTTAGTATTCGACAACGACCTTCCATCACCTCCGATTTCAGTTTGTGAAGAGTTACACAAAGAGGATACTGGGGAATTATCACCATTTCCTTTGACG CATTCAGCAATTCCAGAAAATTGTATCAAATCCGAATTATCGTCAAATAACCAACCAGAAGCGATACCTGAATACTGTACAGATCTTACAAT ] [-] EMBL CD189899 [ GGTGAGTTCC TGAGAAAGATCACGCTGA TGCT CTCGNNAAAG ACAAGNAATTTGGGTTGGATAAAGTTACTGTTTATC AACAATTGGATATAGTTGATGACGAAGGAG CNTAGTATTCGACAACGACCTTCCATCACCTCCGATTTCAGTTAGTGAAGAGTTACACAAAGAGGATACTGGGGAATTATCACCATTTCCTTTGACG CATTCAGCAATTCCAGAAAATTGTATCAAATCCGAATTATCGTCAAATAACCAACCAGAAGCGATACCTGAATACTGTACAGATATTAAAATTGGGCCAAATTG GGGTGAAACTTTAGATACAATAAGTGATCATTACTTAGTCGAACCCACTAATTTT TA TCAGATCC CATTCCAT TACAAAG ACTTTACAGAAGAAGACGCT ] [+] EMBL CD171568 [ GATTGCTCCTCG AAAGAACAAG AATTTGGGTTGGATAAAGTTACTTGTTATCAAACAATTGGATATAGTTGATGACGAAGGAGCCTTAGTATTCGACAACGACCTTCCATCACCTCCGATTTCAGTTTGTGAAGAGTTACACAAAGAGGAAACTGGGGAATTATa ] [+] EMBL CD171531 [ GATTGCTCCTCG AAAGAACAAG AATTTGGGTTGGATAAAGTTACTTGTTATC AACAATTGGATATAGTTGATGACGAAGGAGCCTTAGTATTCGACAACGACCTTCCATCACCTCCGATTTCAGTTTGTGAAGAGTTACACAAAGAGGATACTGGGGAATTATCACCATTTCCTTTGACG CATTCAGCAATTCCAGAAAATTGTATCAAATCCGAATTATCGTCAAATAACCAACCAGAAGCGATACCTGAATACTGTACAGATATTAAAATT GGACANATTGTGGGTGAAACTTTAGATACAATAAGTGATCATTACTTAGTCGAACCAct ] [+] EMBL CD177737 [ TAAAGTTACTTGTTATC AACAATTGGATACAGTTGATGACGAAGGAGCCTTAGTATTCGACAACGACCTTCCATCACCTCCGATTTCAGTTTGTGAAGAGTTACACAAAGAGGACACTGGGGA ] [+] EMBL CD130603 [ TACTTGTTATC AACAATTGGATATAGTTGATGACGAAGGAGCCTTAGTATTCGACAACGACCTTCCATCACCTCCGATTTCAGTTTGTAAAGAGTTACACAAAGAGGATACTGGGGAATTATCACCATTTCCTTTGACGNCATTCAGCAATTCCAGAAAATTGTATCAAATCCGAATTATCGTCAAATAACCAACCAGAAGCGATACCTGAATACTGTACAGATATTAAAATT GGACAAATTGTGGGTGAAACTTTAGATACCATAAGTGATCATTACTTAGTCGAACCAACTAATTNT TATTCAGATCC CATTCCATCTACANAGAACTTTACAGAAGAAGACGCTGAA ] [+] EMBL CD168184 [ ATTCGACAACGACCTTCCATCACCTCCGATTTCAGTTTGTGAAGAGTTACACAAAGAGGATACTGGGGAATTATCACCATTTCCTTTGACG CATTCAGCAATTCCAGAAAATTGTATCAAATCCGAATTATCGTCAAATAACCAACCAGAAGCGATACCTGAATACTGTACAGATATTAAAATT GGACAAATTGTGGGTGAAACTTTAGATACAATAAGTGATCATTACTTAGTCGAACCAACTAATTTT TATTCAGATCC CATTCCATCTACAAAGAACTTTACAGAAGAAGACGCTGAAAATTCACTAGAAGAGCCTACTGAAGAACAATTGAATAGTCAATCCGTTGA ] [+] EMBL CD168227 [ ATTCGACAACGACCTTCCATCACCTCCGATTTCAGTTTGTGAAGAGTTACACAAAGAGGATACTGGGGAATTATCACCATTTCCTTTGACG CATTCAGCAATTCCAGAAAATTGTATCAAATCCGAATTATCGTCAAATAACCAACCAGAAGCGATACCTGAATACTGTACAGATATTAAAATT GGACAAATTGTGGGTGAAACTTTAGATACAATAAGTGATCATTACTTAGTCGAACCAACTAATTTT TATTCAGATCC CATTCCATCTACAAAGAACTTTACAGAAGAAGACGCTGAAAATTCACTAGAAGAGCCTACTGAAGAACAATTGAATAGTCAATCCGTTGA ] [+] EMBL CD065349 [ TTTAGATACAATAAGTGATCATTACTTAGTCGAACCAACTAATTTTATATTCAGATCCGCATTCCATCTACAAAGAACTTTACAGAAGAAGACGCTGAAAATTCACTAGAAGAGCCTACTGAAGAACAATTGAATAGTCAATCCGTTGACTACTTAGAGAAAACATATTGATATAGAGGTTCGAGTTGACCAACAGAACGACGTCGCTAGTATATTTGAACTGAAAGGCAAAACAAACACTGAAAAAGAATCAACAGAATCGCTTGACTT TCAAGAAGAATCAATCAGTTCATTGAATCCTGAAAACGAGGCAACCGAACCATCTTACGTAGAGAAAGAAT ] [-] EMBL CD119550 [ ATCANCAGAATCGC TGACTTNNCAAGGAGAATCAATCAGTTCATGNAATCCTGAAAACGAGGCAACCGAACCATCTTACGTAGAGAAAGAATCCCCTACATTATCTACCAGTGAAAAACAAATTGATAAATCTTCTGATCTTGACGAGGAAATAACTAACCCGGTTTACACTGAGAAAGCAACAAACGTTCCTGGTAGATCAGAAAATCTTCAAACTTTTCTACCATCTGTTGAAATCTCGAATTCTTTAACATCTACCGAATCTTGTCCAGAAGAAGAA GTAGTAGTAGTAGACGAGCACGGAAGAAATATTAGTTCTACAGTTGACG ] [+] EMBL CD195412 [ CATTGAATCCTGAAAACGAGGCAACCGAACCATCTTACGTAGAGAAAGAATCCCCTACATTATCTACCAGTGAAAAACAAATTGATAAATCTTCTGATCTTGACGAAGAAATAACTAACCCGGTTTACACTGAGAAAGCAACAAACGTTCCTGGTAAATCAGAAAATTTTCAAACTTTTCTACCATCTGTTGAAATCTCGAATTCTTTAACATCTACTGAATTTTGTCCAGAAGAAGAA GTAGTAGTAGTTGACGAGCACGGAAGAAATATTAGTTC ] [-] EMBL CD119416 [ ATCCTGAAAACGAGGCAACCGAACCATCTTACGTAGAGAAAGAATCCCCTACATTATCTACCAGTGAAAAACAAATTGATAAATCTCCTGATCTTGACGAAGAAATAACTAACCCGGTTTACACTGAGAAAGCAACAAACGTTCCTGGTAAATCAGAAAATTTTCAAACTTTTCTACCATCTGTTGAAATCTCGAATTCTTTAACATCTACTGAATTTTGTCCAGAAGAAGAA GTAGTAGTAGTAGACGAGCACGGAAGAAATATTAGTTCTACAGTTGACG ] [-] EMBL CD202576 [ AATTGATAAATCTTCTGATCTTGACGAAGAAATAACTAACCCGGTTTACACTGAGAAAGCAACAAACGTTCCTGGTAAATCAGAAAATTTTCAAACTTTTCTACCATCTGTTGAAATCTCGAATTCTTTAACATCTACTGAATTTTGTCCAGAAGAAGAACCTAGTAGTAGTAGACGAGCACGGAAGAAATATTAGTTCTACAGTTGACGCTGAACTACTAGACGAAACACATTCTAGNNNNNNGTTCGCGCAGTCTGTAACATCATCAATACTAACCGACTC] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||