These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 846 fasta sequence [CCTCGAGGCCANAATTCGGCACGAGGGAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTATTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTGTTTACCGAACTTCAAAAAAAGATGGACATGATATAATTCTTGTATGGTTATAGTCTACTAGAATAATTCTTCCTGTTTATCATCGTGCTTGCTGAATAGGTTGTTTTTTTTCTTTTAAAAAAATAGTCTTCAAATTCTTCATTGAATCTGCTGACTTTCTAATCGTATTGTGTAATATTACATGTGCATAGCCTTTTTCTATACATGATCTTAC] [+] EMBL CD080176 [CCTCGAGGCCANAATTCGGCACGAGGGAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTATTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTGTTTACCGAACTTCAAAAAAAGATGGACATGATATAATTCTTGTATGGTTATAGTCTACTAGAATAATTCTTCCTGTTTATCATCGTGCTT ] [-] EMBL CD149440 [ ATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTGTTTACCGAACTTCAAAAAAAGATGGACATGATATAATTCTTGTATGGTTATAGTCTACTAGAATAATTCTTCCTGTTTATCATCGTGCTTGCTGAATAGGTTGTTTTTTTTCTTTTAAAAAAATAGTCTTCAAATTCTTCATTGAATCTGCTGACTTTCTAATCGTATTGTGTAATATTACATGCGCACAGCCTTTTTC ] [-] EMBL CD149338 [ tatnnnAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTGTTTACCGAACTTCAAAAAAAGATGGACATGATATAATTCTTGTATGGTTATAGTCTACTAGAATAATTCTTCCTGTTTATCATCGTGCTTGCTGAATAGGTTGTTTTTTTTCTTTTAAAAAAATAGTCTTCAAATTCTTCATTGAATCTGCTGACTTTCTAATCGTATTGTGTAATATTACATGTGCATAGCCTTTTTC ] [-] EMBL CD131352 [ AAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTGTTTACCGAGCTTCAAAAAAGGATGGACATGATATAATTCTTGTATGGTTATAGTCTACTAGAATAATTCTTCCTGTTTATCATCGTGCTTGCTGAATAGGTTGTTTTTTTTCTTTTAAAAAAATAGTCTTCAAATTCTTCATTGAATCTGCTGACTTTCTAATCGTATTGTGTAATATTACATGTGCATAGCCTTTTTCTATACATGATCTTAC] [-] EMBL SMT14524 [ AATNCTNCCTGTTTATCANCGNGCTTGCTGAATAGGTTGTTTTTTTTCTTTTAAAAAAATAGTCTTCAAATTCTTCATTGAATCTGCTGACTTTCTAANCGTATTGTGTAATATTACATGTGCATAGCCTTTTTCTATACATGATCTTAC] consensusID : consensus_10215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 713 fasta sequence [AAGNCTCTCGGCACGAGGCTATGGGAGGTGGTGTTGAACATGATGATCATGATGATATTACCAGGGAAGAGCTATACAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTATTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTNTAGTAGAGATTTACCANAAGAAATTCATATGTAGTTTACTGGTAGGCAACCT-ACCNTTTATACTGNTGNTAGTCT-ATGAAAATAT] [+] EMBL CD082255 [AAGNCTCTCGGCACGAGGCTATGGGAGGTGGTGTTGAACATGATGATCATGATGATATTACCAGGGAAGAGCTATACAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTATTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTNTAGTAGAGATTTACCANAAGAAATTCATATGTAGTTTACTGGTAGGCAACCT ACCNTTTATACTGNTGNTAGTCT ATGAAAAT ] [+] EMBL AI975544 [ cattcgctaCTATGGGAGGTGGTGTTGAACATGATGATCATGATGATATTACCAGGGAAGAGCTATACAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTATTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAA ] [+] EMBL CD084367 [ gCCAGGGAAGAGCTATACAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTATTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATACAGCAAC ] [-] EMBL CD147654 [ ATACAGAGAGCTCAAACCAAGTTTTAAATACCAATTTACAAGCATCGTTTCGTCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGA ] [-] EMBL CD075862 [ AATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGGCAACCTAACCTTTAATACTGTTGTTAGTCTAATGAAAATAT] [+] EMBL CD077596 [ CCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTCGCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTTTAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGACAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATA ] [-] EMBL CD147727 [ TCATAGGGACCGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGA ] consensusID : consensus_10215#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 508 fasta sequence [TCATAGGGACCGGAGGAACATTTCAAATGTTTGTTTAGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCCGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATTGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATG] [-] EMBL CD097354 [TCATAGGGACCGGAGGAACATTTCAAATGTTTGTTTAGGTTGGTGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCCGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATTGTTTACTATGGGAAAAACGTTATGG ] [+] EMBL CD199517 [ ACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATGCTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAACCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATTTCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGTAGTTTACTGGTAGCTCCAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10215#0 ----------------------------------------------CCTCGAGGCCANAA 14 consensus_10215#1 AAGNCTCTCGGCACGAGGCTATGGGAGGTGGTGTTGAACATGATGATCATGATGATATTA 60 consensus_10215#2 ------------------------------------------------------------ consensus_10215#0 TTCGGCACGAG----GGAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTA 70 consensus_10215#1 CCAGGGAAGAGCTATACAGAGAGTTCAAACCAAGTTTTAAATACCAATTTACAAGCATTA 120 consensus_10215#2 ------------------------------------------------------------ consensus_10215#0 TTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTC 130 consensus_10215#1 TTTCGCCAATAATTGACAAACCTGTCTCTCTTTTTCGCGAACAAGTCGTTGATAGAGTTC 180 consensus_10215#2 ------------------------------------------------------------ consensus_10215#0 GCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTT 190 consensus_10215#1 GCACTCCATACCCATATTATCATAAGCGGTACGACCGTGTTCCAACGATAGACCAGTGTT 240 consensus_10215#2 ------------------------------------------------------------ consensus_10215#0 TAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGG 250 consensus_10215#1 TAACTAACGACAAAGTTTGCATCGAGGAGGCCAATCAGCAATATCATAGGGACCGGTTGG 300 consensus_10215#2 ------------TCATAGGGACCGGAGGAACATTTCA--AATGTTT---GTTTAGGTTGG 43 * * * ** * * *** *** * * ****** consensus_10215#0 TGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACA 310 consensus_10215#1 TGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACA 360 consensus_10215#2 TGGATCTCAATATAGTTCGAATTCTGCGAAAACGCAAAAATGAATGTATGCGGTGGTACA 103 ************************************************************ consensus_10215#0 AGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATG 370 consensus_10215#1 AGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATG 420 consensus_10215#2 AGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTATGTTCACTGAATATGAAGATG 163 ************************************************************ consensus_10215#0 CAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATG 430 consensus_10215#1 CAGCTGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATG 480 consensus_10215#2 CAGCCGTCAACTACTATATTAAATATGGAGAATTACACTGGACGGCAAATGTTGTTGATG 223 **** ******************************************************* consensus_10215#0 CTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAA 490 consensus_10215#1 CTTTTATGAAACAGAAACATCGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAA 540 consensus_10215#2 CTTTTATGAAACAGAAACATTGTTTACTATGGGAAAAACGTTATGGCCCAGTTGGTGAAA 283 ******************** *************************************** consensus_10215#0 CCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATT 550 consensus_10215#1 CCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATT 600 consensus_10215#2 CCTCTGATGAGAGAAAGAAACTAGCTGCAGCTGGTGATAAAGCAACTAAAGAGGGGAATT 343 ************************************************************ consensus_10215#0 TCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGT 610 consensus_10215#1 TCGTTACGAAAATGCGAGAACTTGGCTNTAGTAGAGATTTACCANAAGAAATTCATATGT 660 consensus_10215#2 TCGTTACGAAAATGCGAGAACTTGGCTTTAGTAGAGATTTACCAAAAGAAATTCATATGT 403 *************************** **************** *************** consensus_10215#0 AGTTTACTGGTAGCT--CCAAGTGTTT--ACCGAACTTCAAAAAAAGATGGACATGATAT 666 consensus_10215#1 AGTTTACTGGTAGGCAACCTACCNTTT--ATACTGNTGNTAGTCTATGAAAATAT----- 713 consensus_10215#2 AGTTTACTGGTAGCT--CCAAGTATGAGAAAGAAGATGTTTATCGATTCTGCGGTCCTAT 461 ************* ** * * * * * * consensus_10215#0 AATTCTTGTATGGTTATAGTCTACTAGAATAATTCTTCCTGTTTATCATCGTGCTTGCTG 726 consensus_10215#1 ------------------------------------------------------------ consensus_10215#2 GTTCACTGAATATGAAGATGCAGCTGTCAACTACTATATTAAATATG------------- 508 consensus_10215#0 AATAGGTTGTTTTTTTTCTTTTAAAAAAATAGTCTTCAAATTCTTCATTGAATCTGCTGA 786 consensus_10215#1 ------------------------------------------------------------ consensus_10215#2 ------------------------------------------------------------ consensus_10215#0 CTTTCTAATCGTATTGTGTAATATTACATGTGCATAGCCTTTTTCTATACATGATCTTAC 846 consensus_10215#1 ------------------------------------------------------------ consensus_10215#2 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||