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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 795 fasta sequence
[CCCGGCCAANATTCGGCACGAGGTCTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACTCGAGTCCGATGGAATTCGTCTTCGCCACTGTACTCAGCCTAATCACGAAGCCTCCGAAACCTACTCGTGTTTCTCTTTCGAACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATACCAGCGTCTCGGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGTTGAATCAGCTATTGACTACCTTTTGGAAAATTCAAATGATTCGGATACTCAACGAGGCAGTAATCAGGTCGATCACACCATGTCTGTTATGTCTCCCAGCAGGTTCGCAGTTGCTGCCCCACAGTTCCTACCGAACTCTAGTTTACGTCAATTAAGCCTTAC-TGAACGTCGTGAGGCTCTTTTAAACCATGCGCGTCAGCTGTATCGTTCTCGTCAACAAAAATCCGCTTAATTCATGGCGTAAGATCCCGCCGTTTAACAGTCCTTTTAAAGTTACTGAACTGTGATTCTTTTCATATATCTCTGACCGCCAACTACTTTCTCGTAAACTTAAATGTTAATGAGTTAAAGCCATATCTGATAAATCCTGATTACTTTAACTCTCAGTTTATTAGTTTTTCATCATTGTATAAT-AATAGCAAGATATCTTTCGATTTTACATGTTTTTACATTACTTGACTT-TGTGGTGATCTGTATAATTTTAAAAATTCCCATATTGTTGATTNAGNNAC-ATNTATA]
[+] EMBL CD080754 [CCCGGCCAANATTCGGCACGAGGTCTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACTCGAGTCCGATGGAATTCGTCTTCGCCACTGTACTCAGCCTAATCACGAAGCCTCCGAAACCTACTCGTGTTTCTCTTTCGAACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATACCAGCGTCTCGGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGTTGAATCAGCTATTGACTACCTTTTGGAAAATTCAAATGATTCGGATACTCAACGAGGCAGTAATCAGGTCGATCACACCATGTCTGTTATGTCTCCCAGCAGGTTCGCAGTTGCTGCCCCACAGTTCCTACCGAACTCTAGTTTACGTCAATTAAGCCTTAC TGAACGTCGTGAGGCTCTTTTAAACCATGCGCGTCAGCTGTATCGTTCTCGTCAACAAAAATCCGCTTAATTCATGGCGTAAGATCCCGCCGTTTAACAGTCCTTTTAAAGTTACTGAACTGTGATTCTTTTCATATATCTCTGACCGCCAACTACTTTCTCGTAAACTTAAATGTTAATGAGTTAAAGCCATATCTGATAAATCCTGATTACTTTAACTCTCAGTTTATTAGTTTTTCATCATTGTATAATAAATAGC AGATATCTTTCGATTNTACATGTTNTTACATTACTTGACTTNTGTGGTGATCTGTATAATTNTAAAAATTCCCATANTGTTGATTNAGNNAC ATNTAT ]
[+] EMBL AI975531 [ ctagtTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTGATTTCGAACATACTCGAGTCCGATGGAATTCGTCTTCGCCACTGTACTCAGCCTAATCACGAAGCCTCCGAAACCTACTCGTGTTTCTCTTTCGAACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATACCAGCGTCTCGGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGTTGAATCAGCTATTGACTACCTTTTGGAAAATTCAAATGATTCGGATACTCAACGAGGCAGTAATCAGGTCGATCACACCATGTCTGTTATGTCTCCCAGCAGGTTCGCAGTTGCTGCCCCACAGTTCCTACCGAACTCTAGTTTACGTCAATTAAGCCTTAC TGAACGTCGTGAGGCTCTTTTAAACCAT ]
[-] EMBL CD074678 [ AAATACTTCGTGACATACCAGCGTCTCGGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGTTGAATCAGCTATTGACTACCTTTTGGAAAATTCAAATGATTCGGATACTCAACGAGGCAGTAATCAGGTCGATCACACCATGTCTGTTATGTCTCCCAGCAGGTTCGCAGTTGCTGCCCCACAGTTCCTACCGAACTCTAGTTTACGTCAATTAAGCCTTAC TGAACGTCGTGAGGCTCTTTTAAACCATGCGCGTCAGCTGTATCGTTCTCGTCAACAAAAATCCGCTTAATTCATGGCGTAAGATCCCGCCGTTTAACAGTCCTTTTAAAGTTACTGAACTGTGATTCTTTTCATATATCTCTGACCGCCAACTACTTTCTCGTAAACTTAAATGTTAATGAGTTAAAGCCATATCTGATAAATCCTGATTACTTTAACTCTCAGTTTATTAGTTTTTCATCATTGTATAAT AATAGCAAGATATCTTTCGATTTTACATGTTTTTACATTACTTGACTT TGTGGTGATCTGTATAATTTTAAAAATTCCCATATTG TGATTTAG AACAATATATA]
[+] EMBL BG931488 [ gTCCGTGAAGCTCTTGTGAATACTCAAGGTGACGTTGAATCAGCTATTGACTACCTTTTGGAAAATTCAAATGATTCGGATACTCAACGAGGCAGTAATCAGGTCGATCACACCATGTCTGTTATGTCTCCCAGCAGGTTCGCAGTTGCTGCCCCACAGTTCCTACCGAACTCTAGTTTACGTCAATTAAGCCTTAC TGAACGTCGTGAGGCTCTTTTAAACCATGCGCGTCAGCTGTATCGTTCTCGTCAACAAAAATCCGCTTAATTCATGGCGTAAG ]
[-] EMBL AI395213 [ tacCCGAACT TAGTTAACGTCAATTAAG CTTACTTGAACGTCGTGA GCTCTTTTAAACCATGCGCGTCAGCTGTATCGTTCTCGTCAACAAAAA CCGCTTAATTCATGGCGTAAGATCCCGCCGTTTAACAGTCCTTTTAAAGTTACTGAACTGTGATTCTTTTCATATATCTCTGACCGCCAACTACTTTCTCGTAAACTTAAATGCTAATGAGTTAAAGCCATATCTGATAAATCCTGATTACTTTAACTCTCAGTTTATTAGTTTTTCATCATTGTATAAT AATAGCAAGATATCTTTCGATTTTACATGTTTTTACATTACTTGACTT TGTGGTGATCTGTATAATGTTAAAAATTCCCATATTGTga ]
consensusID : consensus_10217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 776 fasta sequence
[GAGGATTGTATTACACCGAACACACATGTCTTCCATTGGAAGTCAATTCCACATAGCAAAGAAAAGACTCGTTCTGCCCCTGAATTCGTTCTTCGGTGTGCACGAGACAATCATCAACCTGTCCACCTACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCTTTTCAAGTTTGATTACAAGATGTTTGGTTCGGTGGATAAAGTGCAACCTGTGGCACTTAAGGTTCATCGAATCTTCCCTATTAAATTAGTGGTTCATCCTGTTTTTTGGTTTATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACTCCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCGCTATTGCTTCCTCCCTCGGAGCTACACTCAGCCCAATAAATGCTGAACATCTGGCAGATTACACTGGAACGGAATCACCGATTGCTTCGCTTTCTCTCCCTAATGCACGATCTTGTACTATGTCTAGTTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACTCGAGTCCGATGGAATTCGTCTTCGCCACTGTACTCAGCCTAATCACGAAGCCTCCGAAACCTACTCGTGTTTCTCTTTCGAACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATACCAGCGTCTCAGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGT]
[+] EMBL CD194637 [GAGGATTGTATTACACCGAACACACATGTCTTCCATTGGAAGTCAATTCCACATAGCAAAGAAAAGACTCGTTCTGCCCCTGAATTCGTTCTTCGGTGTGCACGAGACAATCATCAACCTGTCCACCTACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCTTTTCAAGTTTGATTACAAGATGTTTGGTTCGGTGGATAAAGTGCAACCTGTGGCACTTAAGGTTCATCGAATCTTCCCTATTAAATTAGTGGTTCATCCCGTTTTTTGGTTTATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACTCCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCGCTATTGCTTCCTCCCTCGGAGCTACACTCAGCCCAATAAATGCTGAACATCTGGCAGATTACACTGGAACGGAATCACCGATTGCTTCGCTTTCTCTCCCTAATGCACGATCTTGTACTATGTCTAGTTTATCTG ]
[-] EMBL CD177959 [ TGGAAGCCAATTCCACAAAGCAAAGAAAGGACTCGTTCTGTCCCTGAATTCGTTCTTCGGTGGGCACGAGACAATCATCAACCTGTCCACCTACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCTTTTCAAGTTTGATANCAAGATGTTTGGTTCGGTGGATAAAGTGCAACCTGTGGCACTTAAGGTTCATCGAATCTTCCCTATTAAATTAGTGGTTCATCCTGTTTTTTGGTTTATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACTCCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCGCTATTGCTTCCTCCCTCGGAGGTAC ]
[+] EMBL CD061450 [ CATCAACCTGTCCACCTACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCTTTTCAAGTTTGATTACAAGATGTTTGGTTCGGTGGATAAA GTGGCACTTAAGGTTCATCGAATCTTCCCTATTAAATTAGTGGTTCATCCTGTTTTTTGGTTTATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACTCCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCGCTATTGCTTCCTCCCTCGGAGCTACACTCAGCCCAATAAATGCTGAACATCTGGCAGATTACACTGGAACGGAATCACCGATTGCTTCGCTTT ]
[+] EMBL CD061485 [ CATCAACCTGTCCACCTACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCTTTTCAAGTTTGATTACAAGATGTTTGGTTCGGTGGATAAA GTGGCACTTAAGGTTCATCGAATCTTCCCTATTAAATTAGTGGTTCATCCTGTTTTTTGGTTTATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACTCCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCGCTATTGCTTCCTCCCTCGGAGCTACACTCAGCCCAATAAATGCTGAACATCTGGCAGATTACACTGGAACGGAATCACCGATTGCTTCGCTTT ]
[-] EMBL CD061463 [ ATCAACCTGTCCACCTACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCTTTTCAAGTTTGATTACAAGATGTTTGGTTCGGTGGATAAAGTGCAACCTGTGGCACTTAAGGTTCATCGAATCTTTCCTATTAAATTAGTGGTTCATCCTGTTTTTTGGTTTATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACTCCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCGCTATTGCTTCCTCCCTCGGAGCTACACTCAGCCCAATAAATGCTGAACATCTGGCAGATTACACTGGAACGGAATCACCGATTGCTTCGCTTTC ]
[-] EMBL BG932608 [ AGATTACACTGGAACGGAATCACCGATTGCTTCGCTTTCTCTCCCTAATGCACGATCTTGTACTATGTCTAGTTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACTCG ]
[+] EMBL BG932485 [ AGATTACACTGGAACGGAATCACCGATTGCTTCGCTTTCTCTCCCTAATGCACGATTTTGTACTATGTCTAGTTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACT ]
[-] EMBL SMAA28880 [ cgagCTGGAACGGAATCACCGAATTCTTCGCTTTCTCTCCCTAATGCACGNTCTTGTACTATGTCTAGTTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTA ]
[-] EMBL CD061977 [ CGCTTTCTCTCCCTAATGCACGATCTTGTACTATGTCTAGTTTATCTGCAACGCCACCCAGTTCCCCTTTGTTTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACTCGAGTCCGATGGAATTCGTCTTCGCCACTGTACTCAGCCTAATCACGAAGCCTCCGAAACCTACTCGTGTTTCTCTTTCGAACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATACCAGCGTCTCAGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10217#0 CCCGGCCAANATTCGGCACGAGGT-CTTATCTGCAAC-GCCACCCAGTTCCCCTTTGTCT 58
consensus_10217#1 -GAGGATTGTATTACACCGAACACACATGTCTTCCATTGGAAGTCAATTCCACATAGCAA 59
** *** * * * * *** * * * * ** **** * * *
consensus_10217#0 AGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACTCGAGTCCGAT 118
consensus_10217#1 AGAAAAGACTCGTTCTGCCCCTGAATTCGTTCTTCGGT-------GTGCACGAG----AC 108
***** * ** * * * ** ***** * * * **** *
consensus_10217#0 GGAATTCGTCTTCGCCACTGTACTCAGCCTAATCACGAAGCCTCCGAAACCTACTCGTGT 178
consensus_10217#1 AATCATCAACCTGTCCACC-TACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCT 167
** * * **** **** * ** * * ** * * * * *
consensus_10217#0 TTCTCTTTCGAACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATACCAGCGTCT 238
consensus_10217#1 TTTCAAGTTTGATTACAAGATGTTTGGTTCGGTGGA-TAAAGTGCAACCTGT-GGCACTT 225
** * * * ** * * ** *** * ** * ** * ** *
consensus_10217#0 CGGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGTTGAATCAGCTATTGACTACCTT 298
consensus_10217#1 AAGGTTCATCGAATCTTCCCTA----TTAAATTAGTGGTTCATC--CTGTTTTTTGGTTT 279
* * * * * * * * ** * * * *** ** ** * **
consensus_10217#0 TTGGAAAATTCAAATGATTCGGATACTCAACGAGGCAGTAATCAGGTCGATCACACCATG 358
consensus_10217#1 ATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACT 339
**** ** * * **** * **** *** * * *
consensus_10217#0 TCTGTTA------TGTCTCCCAGCA-GGTTCGCAGTTGCTGCCCCACAGTTCCTACCGAA 411
consensus_10217#1 CCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCG-- 397
* *** ***** * * * ** *** * **** * ***
consensus_10217#0 CTCTAGTTTACGTCAATTAAGCCTTACTGAACGTCGTGAGGCTCTTTTAAACCATGCGCG 471
consensus_10217#1 CTATTGCTTCCTCCCTCGGAGCTACACTCAGCCCAATAAA--TGCTGAACATCTGGCAGA 455
** * * ** * * *** *** * * * * * * * * * **
consensus_10217#0 TCA-GCTGTATCGTTCTCGTCAACAAAAATCCGCTTAATTCATGGCGTAAGATCCCGCCG 530
consensus_10217#1 TTACACTGGAACGGAATCACCGATTGCTTCGCTTTCTCTCCCTAATGCACGATCTTGTAC 515
* * *** * ** ** * * * * * * * * * **** *
consensus_10217#0 TTTAACAGTCCTTTTAAAGTTACTGAACTGTGATTCTTTTCATATATCTCTGACCGCCAA 590
consensus_10217#1 TATGTCTAGTTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAG 575
* * * * * * * ** **** ** * * * * *
consensus_10217#0 CTACTTTCTCGTAAACTTAAATGTTAATGAGTTAAAGCCATATCTGATAAATCCTGATTA 650
consensus_10217#1 TTCGTCAAGCGATTCTTTAATTTCGAACATACTCGAGTCCGATGGAATTCGTCTTCGCCA 635
* * ** **** * ** * ** * ** ** ** * *
consensus_10217#0 CTTTAACTCTCAGTTTATTAGTTTTTCATCATTGTATAATAATAGCAAGATATCTTTCGA 710
consensus_10217#1 CTGTA---CTCAGCCTAATCACGAAGCCTC--CGAAACCTACTCGTGTT-TCTCTTTCGA 689
** ** ***** ** * * ** * * ** * * * ********
consensus_10217#0 TTTTACATGTTTTTACATTACTTGACTTTGTGGTGATCTGTATAATTTTAAAAATTCCCA 770
consensus_10217#1 ACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATAC-CAGCGTCTCAGATCCGTG 748
* * * * * * * * * **** * * * * ** *
consensus_10217#0 TATTGTTGATTNAGNNACATNTATA--- 795
consensus_10217#1 AAGCTCTTGTGAATACTCAAGGTGACGT 776
* * * * ** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||