These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1268 fasta sequence [TGTTTGCATCTGGTCCTCTCAAACTGACTATTAAAGACCTCGAATATATGAATGACGACCCCACTTCTGTACATATACTGCTTCAATTAAGGTCTCGCCATTGTTTCACAAGTTCATTGTTGGTGTTCAACACTCAAAAAAGAAACTGTTAGAAAACGAATTCCGTTGTTACATTGATATCCCGAATTCTGGTTCCAATTCTTCAACAATCTCTGTTACTGCGACGTCNAAATTTAACG-TTTAAATGCGTGTCGTCGTATCCTCTGGATAGTGACTGATGCACGTAATCGCTGTCAACCAACTCATTTCATTTGTTTACCAGTTACCTGTTCGACTGTTAAAGATAATTTTCAGGCATTCAGACAGTCTGTTTTACAAGCCGCTAGTGAATGTTCTCATGATTTTATGGGCGTGGATAGTTCTATCTTTCATTCAGTGTCTACGTTACACTTCACTTTGGTAACTCTTGTGTTGGCTGATGAATCTGAAGTTGAAAAGGCGTGTGAAATATTAAAGACTTTCTACAAATCTCAAAGAGGTATTCAGTTGTTTGCATCTGGTCCTCTCAAACTGACTATTAAAGACCTTGAATATATGAATGACGACCCCACTTCTGTACATGTACTCTACGCAAAGCTGATGGAATCATCGGATTCACAAAGACTACAAACAATTGCCAATGAACTATTCAATCTACTTGCTGAACAAAATCTAACCAGCACTGGGTCTTATCGTCCAGATAATAATGTAAAATTACATATGACTTTACTTAATTCTAAATATCGTCAGGAAAAAAGCAATCGTGATGCTTTATTTCAAGGTTTCTCACCTAATGCTCGTACATCTTTCAGTGTAACCGGAATTTTAAAAATTGCAGGAAATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCGTTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGCTGTTGTAAGCTAGAGTTCACTACTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTTCAGTTTAAGTCTTTCGTCTACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCAGATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGAC-TATCCCATACTGTGTACAGTTTTATTTTGAATCACTGTTCTCTTTAAATGCACAATCTTTCTACGTTTTCTGTGTAACTGCGATATTCCAG-AAAAGTAATTACTCAAATACATAAT] [+] EMBL CD196400 [TGTTTGCATCTGGTCCTCTCAAACTGACTATTAAAGACCTCGAATATATGAATGACGACCCCACTTCTGTACATATACTGCTTCAATTAAGGTCTCGCCATTGTTTCACAAGTTCATTGTTGGTGTTCAACACTCAAAAAAGAAACTGTTAGAAAACGAATTCCGTTGTTACATTGATATCCCGAATTCTGGTTCCAATTCTTCAACAATCTCTGTTACTGCGACGTCNAAATTTAACGTTTTAAATGCGTGTCGTCGTATCCTCTGGATAGTGACTGATGCACGTAATCGCTGTCAACCAACTCATTTCATTTGTTTAC ] [+] EMBL CD079817 [ TTAACG TTTAAATGCGTGTCGTCGTATCCTCTGGATAGTGACTGATGCACGTAATCGCTGTCAACCAACTCATTTCATTTGTTTACCAGTTACCTGTTCGACTGTTAAAGATAATTTTCAGGCATTCAGACAGTCTGTTTTACAAGCCGCTAGTGAATGTTCTCATGATTTTATGGGCGTGGATAGTTCTATCTTTCATTCAGTGTCTACGTTACACTTCACTTTGGTAACTCTTGTGTTGGCTGATGAATCTGAAGTTGAAAAGGCGTGTGAAATATTAAAGACTTTCTACAAATCTCAAAGAGGTATTCAGTTGTTTGCATCTGGTCCTCTCAAACTGACTATTAAAGACCTTGAATATATGAATGACGACCCCACTTCTGTACATGTACTCTACGCAAAGCTGATGGAATCATCGGATTCACAAAGACTACAAACAATTGCCAATGAACTATTCAATCTACTTGCTGAACAAAATCTAACCAGCACTGGGTCTTATCGTCCAGATAATAATGTAAAATTACATATGACTTTACTTAATTCTAAATATCGTCAGGAAAAAAGCAATCGTGATGCTTTATTTCAAGGTTTCTCACCTAATGCTCGTACATCTTTCAGTGTAACCGGAATTNTAAAAATTGCANGAAATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTT ] [-] EMBL CD073838 [ CTTCTGTACATGTACTCTACGCAAAGCTGATGGAATCATCGGATTCACAAAGACTACAAACAATTGCCAATGAACTATTCAATCTACTTGCTGAACAAAATCTAACCAGCACTGGGTCTTATCGTCCAGATAATAATGTAAAATTACATATGACTTTACTTAATTCTAAATATCGTCAGGAAAAAAGCAATCGTGATGCTTTATTTCAAGGTTTCTCACCTAATGCTCGTACATCTTTCAGTGTAACCGGAATTTTAAAAATTGCAGGAAATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCGTTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGCTGTTGTAAGCTAGAGTTCACTACTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTTCAGTTTAAGTCTTTCGTCTACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCAGATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGAC TATCCCATACTGTGTACAGTTTTATTTTGAATCACTGTTCTCTTTAAATGCACAATCTTTCTACGTTTTCTGTGTAACTGCGATATTCCAG AAAAGTAATTACTCAAAAACATAAT] [-] EMBL CD074076 [ AAAGCTGATGGAATCATCGGATTCACAAAGACTACAAACAATTGCCAATGAACTATTCAATCTACTTGCTGAACAAAATCTAACCAGCACTGGGTCTTATCGTCCAGATAATAATGTAAAATTACATATGACTTTACTTAATTCTAAATATCGTCAGGAAAAAAGCAATCGTGATGCTTTATTTCAAGGTTTCTCACCTAATGCTCGTACATCTTTCAGTGTAACCGGAATTTTAAAAATTGCAGGAAATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCGTTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGCTGTTGTAAGCTAGAGTTCACTACTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTTCAGTTTAAGTCTTTCGTCTACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCAGATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGAC TATCCCATACTGTGTACAGTTTTATTTTGAATCACTGTTCTCTTTAAATGCACAATCTTTCTACGTTTTCTGTGTAACTGCGATATTCCAG AAAAGTAATTACTCAAATACATAAT] [+] EMBL AI110892 [ GATGCTTTATTTCAAGGTTTCTCACCTAATGCTCGTACATCTTTCAGTGTAACCGGAATTTTAAAAATTGCAGGAAATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCGTTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGCTGTTGTAAGCTAGAGTTCACTACTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTTCAGTTTAAGTCTTTCGTCTACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCANATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGAC TATCCCATACTGTGTACAGTTTTATTTTGAATCACTGTTCTCTTTAAATGCACAATCTTTCTACGTTTTCTGTGTTACTGCGANATCCCAGAAAAAGTAATTACTCAAATACATAAT] [-] EMBL CD073830 [ TTTATTTCAAGGTTTCTCACCTAATGCTAGAACATCTTTCAGTGTAACCGGAATTTTAAAAATTGCAGGAAATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCGTTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGCTGTTGTAAGCTAGAGTTCCCTACTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTCAAATATTTCAGTTTAAGTCTTTAGTGAACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCAGATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGACATATCCCATACTGTGTTCAGTTTTATTTTCAATCACTGTTCTCTTTAAATGCCCAATCTTTTTACGTTTTCTGTGTAACTGCGATATTCCAG TAAAGTAATTACTCAAAAACATAAT] [-] EMBL CD076887 [ TGATCGTTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGCTGTTGTAAGCTAGAGTTCACTACTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTTCAGTTTAAGTCTTTCGTATACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCAGATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGAC TATCCCATACTGTGTACAGTTTTATTTTGAATCACTGTTCTCTTTAAATGCACAATCTTTATACGTTTTCTGTGTAACTGCGATATTCCAG AAAAGTAATTACTCAAATACATAAT] consensusID : consensus_10226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 828 fasta sequence [AGCCAANAATTCTGCACGAGGGCGAAAATGAATCCGATTGCAACTGGGAATATACCTATCATCCCCCCTGTTGCTGCTCCCAACTTGCTAGTCGGACTGCCACATATGGCAGCTCCTGGAGCATTGCCTTCCGTAACTCCAGCTGTTGTCATGCCCCAAGCTCTTACACGCATGCCAGAATCAATCGGACAACCAAATAATACCATATATATAAACAATATGAATGAAAAGATAAAGTGTGATGAATTAAAGAAATCCCTATGCGCAGTATTTGATCAGTTTGGTCAAATACTGGATATAATTACATCACGAACACTTAAAATGCGCGGTCAAGCCTTTGTTGTCTTTGATGATATCAGTAGTGCGTCCACAGCACTTCGGTCAATGCAAGGCTTTCCATTGTATGAAAAACCCATGCGAATACATTTTGCCAAAGTTGATTCAGATGTCATTGCTAAACGTAAAGGCACATTTGTACAAAGACCGAAAGCTGCATAAGAAGAAAANNGGGGCGCCGACCTCATTTTTATATGTGCGTGCAGTACGCTACAGTAGACTACTGGAGGTATCCATTGTTATCACATGATAAAAATGGCAAAAGCTTTAGTTTGAAATATTTCAGTTTAAGTCTTTCGTCTACGTGGTATGCTCTGCGTAATCTGAAAAGCTGATTTTCCACATTATCTTGTGAGTTATTTGATGACGCGGTGATAGCAAGACTATCCCATACTGGGTACAGAATTATCTTGATCACTGGTCTCTTTAATGCACATCTATTTACGTAATTGGGGACTGCGATCTTCAGAAAAGATGACTCAATACATATAC] [+] EMBL CD079564 [AGCCAANAATTCTGCACGAGGGCGAAAATGAATCCGATTGCAACTGGGAATATACCTATCATCCCCCCTGTTGCTGCTCCCAACTTGCTAGTCGGACTGCCACATATGGCAGCTCCTGGAGCATTGCCTTCCGTAACTCCAGCTGTTGTCATGCCCCAAGCTCTTACACGCATGCCAGAATCAATCGGACAACCAAATAATACCATATATATAAACAATATGAATGAAAAGATAAAGTGTGATGAATTAAAGAAATCCCTATGCGCAGTATTTGATCAGTTTGGTCAAATACTGGATATAATTACATCACGAACACTTAAAATGCGCGGTCAAGCCTTTGTTGTCTTTGATGATATCAGTAGTGCGTCCACAGCACTTCGGTCAATGCAAGGCTTTCCATTGTATGAAAAACCCATGCGAATACATTTTGCCAAAGTTGATTCAGATGTCATTGCTAAACGTAAAGGCACATTTGTACAAAGACCGAAAGCTGCATAAGAAGAAAANNGGGGCGCCGACCTCATTTTTATATGTGCGTGCAGTACGCTACAGTAGACTACTGGAGGTATCCATTGTTATCACATGATAAAAATGGCAAAAGCTTTAGTTTGAAATATTTCAGTTTAAGTCTTTCGTCTACGTGGTATGCTCTGCGTAATCTGAAAAGCTGATTTTCCACATTATCTTGTGAGTTATTTGATGACGCGGTGATAGCAAGACTATCCCATACTGGGTACAGAATTATCTTGATCACTGGTCTCTTTAATGCACATCTATTTACGTAATTGGGGACTGCGATCTTCAGAAAAGATGACTCAATACATATAC] [+] EMBL CD192125 [ AAACAATATGAATGAAAAGATAAAGTGTGATGAATTAAAGAAATCCCTATGCGCAGTATTTGATCAGTTTGGTCAAATACTGGATATAATTACATCACGAACACTTAAAATGCGCGGTCAAGCCTTTGTTGTCTTTGATGATATCAGTAGTGCGTCCACAGCACTTCGGTCAATGCAAGGCTTTCCATTGTATGA ] consensusID : consensus_10226#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 827 fasta sequence [AGCCAANAATTTTGCACGAGGGTCACTCTTGTGTTGGCTGATGAATCTGAAGTTGAAAAGGCGTGTGAAATATTAAAGACTTTCTACAAATCTCAAAGAGGTATTCAGTTGTTTGCATCTGGTCCTCTCAAACTGACTATTAAAGACCTTGAATATATGAATGACGACCCCACTTCTGTACATGTACTCTACGCAAAGCTGATGGAATCATCGGATTCACAAAGACTACAAACAATTGCCAATGAACTATTCAATCTACTTGCTGAACAAAATCTAACCAGCACTGGGTCTTATCGTCCAGATAATAATGTAAAATTACATATGACTTTACTTAATTCTAAATATCGTCAGGAAAAAAGCAATCGTGATGCTTTATTTCAAGGTTTCTCACCTAATGCTCGTACATCTTTCAGTGTAACCGGAATTTTAAAAATTGCAGGAAATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCGTTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGCTGTTGTAAGCTAGAGTTCACTACTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTTCAGTTTAAGTCTTTCGTCTACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCAGATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGACTATCCCATACTGTGTACAGTTNTAATTTGAATCACTGNTCTCTTTAATGCACAATCTTTCTACNGTTTCTGTGTAACTGCGATATTCCAGAAAAGTAATACTCAANTACATAT] [+] EMBL CD079574 [AGCCAANAATTTTGCACGAGGGTCACTCTTGTGTTGGCTGATGAATCTGAAGTTGAAAAGGCGTGTGAAATATTAAAGACTTTCTACAAATCTCAAAGAGGTATTCAGTTGTTTGCATCTGGTCCTCTCAAACTGACTATTAAAGACCTTGAATATATGAATGACGACCCCACTTCTGTACATGTACTCTACGCAAAGCTGATGGAATCATCGGATTCACAAAGACTACAAACAATTGCCAATGAACTATTCAATCTACTTGCTGAACAAAATCTAACCAGCACTGGGTCTTATCGTCCAGATAATAATGTAAAATTACATATGACTTTACTTAATTCTAAATATCGTCAGGAAAAAAGCAATCGTGATGCTTTATTTCAAGGTTTCTCACCTAATGCTCGTACATCTTTCAGTGTAACCGGAATTTTAAAAATTGCAGGAAATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCGTTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGCTGTTGTAAGCTAGAGTTCACTACTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTTCAGTTTAAGTCTTTCGTCTACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCAGATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGACTATCCCATACTGTGTACAGTTNTAATTTGAATCACTGNTCTCTTTAATGCACAATCTTTCTACNGTTTCTGTGTAACTGCGATATTCCAGAAAAGTAATACTCAANTACATAT] [+] EMBL CD083444 [ AATCTCAAAGAGGTA TCAGTTGTTTGCATCTGGTCCTCTCAAACTGACTATTAAAGACCTTGAATATATGAATGACGACCCCACTTCTGTACATGTACTCTACGCAAAGCTGATGGAATCATCGGATTCACAAAGACTACAAACAATTGCCAATGAACTATTCAATCTACTTGCTGAACAAAATCTAACCAGCACTGGGTCTTATCGTCCAGATCATAATGTAAAATTACATATGACTTTACTTAATTCTAAATATCGTCAGGAAAAAAGCAATCGTGATGCTTTATTTCAAGGTTTCTCACCTAATGCTCGTACATCTTTCAGTGTAACCGGAATTTTAAAAATTGCAGGAAATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCGTTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGCTGTTGTAAGCTAGAGTTCACTACTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTTCAGTT ] consensusID : consensus_10226#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [GGGGAGAAAACAAAACAACAATGTGTTTCTTAAACGCCAAAGGTTAAGGAATCCATGGGATTCCCAAAGCTTCAAACAATTGCCCAATAACTTTTCAATTTGCTTGGTTAACAAAAATCAACCCACCAACTGGTTCTAATTGTCCCAGATATTAAGGTAAAATTACATATGCCTTTACTTAATTTTAAATTTGTCAAGGAAAAAACAAATCGTGATGCTTTATTTCAAGGGTCTCTCACCTAATGCTCGTACATCTTCCAGTGTAACCGGAATTTTAAAAATTGCAGGAAATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCGTTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGCTGTTGTAAGCTAGAGTTCACTACTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTTCAGTTTAAGTCTTTCGTCTACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCAGATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGACTATCCCATTCTGTGTACAGTTTTATTTTGAATCACTGTTCTCTTTAAATGCACAATCTTTATACGTTTTTTGAGTAACCCAGATCTTCCCGGCAAGTAATTATTCGCCAAAATAATAAATTTTA] [-] EMBL CD076884 [GGGGAGAAAACAAAACAACAATGTGTTTCTTAAACGCCAAAGGTTAAGGAATCCATGGGATTCCCAAAGCTTCAAACAATTGCCCAATAACTTTTCAATTTGCTTGGTTAACAAAAATCAACCCACCAACTGGTTCTAATTGTCCCAGATATTAAGGTAAAATTACATATGCCTTTACTTAATTTTAAATTTGTCAAGGAAAAAACAAATCGTGATGCTTTATTTCAAGGGTCTCTCACCTAATGCTCGTACATCTTCCAGTGTAACCGGAATTTTAAAAATTGCAGGAAATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCGTTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGCTGTTGTAAGCTAGAGTTCACTACTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTTCAGTTTAAGTCTTTCGTCTACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCAGATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGACTATCCCATTCTGTGTACAGTTTTATTTTGAATCACTGTTCTCTTTAAATGCACAATCTTTATACGTTTTTTGAGTAACCCAGATCTTCCCGGCAAGTAATTATTCGCCAAAATAATAAATTTTA] consensusID : consensus_10226#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [GCCTTGCATTGACCGAAGTGCTGTGGACGCACTACTGATATCATCAAAGACAACAAAGGCTTGACCGCGCATTTTAAGTGTCCGTGATGTAATTATATCCAGTATTTGACCAAACTGATCAAATACTGCGCATAGGGATTTCTTTAATTCATCACACTTTATCTTTTCATTCATATTGTTTATATATATGGTATTATTTGGTTGTCCGATTGATTCTGGCATGCGTGTAAGAGCTTGGGTTTTTCATACAATGGAAAGCCTTGCATTGACCGAAGTGCTGTGGACGCACTACTGATATCATCAAAGACAACAAAGGCTCGACCGCGCATTTTAAGTGTTCGTGATGTAATTATATCCAGTATTTGACCAAACTGATCAAATACTGCGCATAGGGATTTCTTTAATTCATCACACTTTATCTTTTCATTCATAT] [+] EMBL CD137029 [GCCTTGCATTGACCGAAGTGCTGTGGACGCACTACTGATATCATCAAAGACAACAAAGGCTTGACCGCGCATTTTAAGTGTCCGTGATGTAATTATATCCAGTATTTGACCAAACTGATCAAATACTGCGCATAGGGATTTCTTTAATTCATCACACTTTATCTTTTCATTCATATTGTTTATATATATGGTATTATTTGGTTGTCCGATTGATTCTGGCATGCGTGTAAGAGCTTGGGTTTTTCATACAATGGAAAGCCTTGCATTGACCGAAGTGCTGTGGACGCACTACTGATATCATCAAAGACAACAAAGGCTCGACCGCGCATTTTAAGTGTTCGTGATGTAATTATATCCAGTATTTGACCAAACTGATCAAATACTGCGCATAGGGATTTCTTTAATTCATCACACTTTATCTTTTCATTCATAT] consensusID : consensus_10226#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [CTCGCAGCCAAGATTCGGCACGAGGCGGATTTTTTGAATTTTTGTAACATTCCACCGAAAATGAATCCGATTGCAACTGGGAATATACCTATCATCCCCCCTGTTGCTGCTCCCAACTTGCTAGTCGGACTGCCACATATGGCAGCTCCTGGAGCATTGCCTTCCGTAACTCCAGCTGTTGTCATGCCCCAAGCTCTTACACGCATGCCAGAATCAATCGGACAACCAAATAATACCATATATATAAACAATATGAATGAAAAGATAAAGTGTGATGAATTAAAGAAATCCCTATGCGCAGTATTTGATCAGTTTGGGTCAAATACTGGATATAATTACATCACGAACACTTAA] [+] EMBL CD077986 [CTCGCAGCCAAGATTCGGCACGAGGCGGATTTTTTGAATTTTTGTAACATTCCACCGAAAATGAATCCGATTGCAACTGGGAATATACCTATCATCCCCCCTGTTGCTGCTCCCAACTTGCTAGTCGGACTGCCACATATGGCAGCTCCTGGAGCATTGCCTTCCGTAACTCCAGCTGTTGTCATGCCCCAAGCTCTTACACGCATGCCAGAATCAATCGGACAACCAAATAATACCATATATATAAACAATATGAATGAAAAGATAAAGTGTGATGAATTAAAGAAATCCCTATGCGCAGTATTTGATCAGTTTGGGTCAAATACTGGATATAATTACATCACGAACACTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10226#0 TGTTTGCATCTGGTCCTCTCAAACTGACTATTAAAGACCTCGAATATATGAATGACGACC 60 consensus_10226#2 ------------------------------------------------------------ consensus_10226#3 ------------------------------------------------------------ consensus_10226#1 ------------------------------------------------------------ consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 ------------------------------------------------------------ consensus_10226#0 CCACTTCTGTACATATACTGCTTCAATTAAGGTCTCGCCATTGTTTCACAAGTTCATTGT 120 consensus_10226#2 ------------------------------------------------------------ consensus_10226#3 ------------------------------------------------------------ consensus_10226#1 ------------------------------------------------------------ consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 ------------------------------------------------------------ consensus_10226#0 TGGTGTTCAACACTCAAAAAAGAAACTGTTAGAAAACGAATTCCGTTGTTACATTGATAT 180 consensus_10226#2 ------------------------------------------------------------ consensus_10226#3 ------------------------------------------------------------ consensus_10226#1 ------------------------------------------------------------ consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 ------------------------------------------------------------ consensus_10226#0 CCCGAATTCTGGTTCCAATTCTTCAACAATCTCTGTTACTGCGACGTCNAAATTTAACGT 240 consensus_10226#2 ------------------------------------------------------------ consensus_10226#3 ------------------------------------------------------------ consensus_10226#1 ------------------------------------------------------------ consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 ------------------------------------------------------------ consensus_10226#0 TTAAATGCGTGTCGTCGTATCCTCTGGATAGTGACTGATGCACGTAATCGCTGTCAACCA 300 consensus_10226#2 ------------------------------------------------------------ consensus_10226#3 ------------------------------------------------------------ consensus_10226#1 ------------------------------------------------------------ consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 ------------------------------------------------------------ consensus_10226#0 ACTCATTTCATTTGTTTACCAGTTACCTGTTCGACTGTTAAAGATAATTTTCAGGCATTC 360 consensus_10226#2 ------------------------------------------------------------ consensus_10226#3 ------------------------------------------------------------ consensus_10226#1 ------------------------------------------------------------ consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 ------------------------------------------------------------ consensus_10226#0 AGACAGTCTGTTTTACAAGCCGCTAGTGAATGTTCTCATGATTTTATGGGCGTGGATAGT 420 consensus_10226#2 ------------------------------------------------------------ consensus_10226#3 ------------------------------------------------------------ consensus_10226#1 ------------------------------------------------------------ consensus_10226#5 ----------------------------------------------------------CT 2 consensus_10226#4 ------------------------------------------------------------ consensus_10226#0 TCTATCTTTCATTCAGTGTCTACGTTACACTTCACTTTGGTAACTCTTGTGTTGGCTGAT 480 consensus_10226#2 ----------------AGCCAANA--ATTTTGCACGAGGGTCACTCTTGTGTTGGCTGAT 42 consensus_10226#3 ------------------------------------------------------------ consensus_10226#1 ----------------------------AGCCAANAATTCTGCACGAG---GGCGAAAAT 29 consensus_10226#5 CGCAGCCAAGATTCGGCACGAGGCGGATTTTTTGAATTTTTGTAACATTCCACCGAAAAT 62 consensus_10226#4 ------------------------------------------------------------ consensus_10226#0 GAATCTGAAGTTGAAAAGGCGTGTGAAATATTAAAGACTTTCTACAAATCTCAAAGAGGT 540 consensus_10226#2 GAATCTGAAGTTGAAAAGGCGTGTGAAATATTAAAGACTTTCTACAAATCTCAAAGAGGT 102 consensus_10226#3 ------------------------------------------------------------ consensus_10226#1 GAATCCGATTGCAACTGGGAATATACCTATCATCCCCCCTGTTGCTGCTCCCAACTTGCT 89 consensus_10226#5 GAATCCGATTGCAACTGGGAATATACCTATCATCCCCCCTGTTGCTGCTCCCAACTTGCT 122 consensus_10226#4 ------------------------------------------------------------ consensus_10226#0 ATTCAGTTGTTTGCATCTGGTCCTCTCAAACTGACTATTAAAGACCTTGAATATATGAAT 600 consensus_10226#2 ATTCAGTTGTTTGCATCTGGTCCTCTCAAACTGACTATTAAAGACCTTGAATATATGAAT 162 consensus_10226#3 -------------------------------------------------------GGGGA 5 consensus_10226#1 AGTCGGACTGCCACATATGGCAGCTCC---TGGAGCATTGCCTTCCGTAACTCCAGCTGT 146 consensus_10226#5 AGTCGGACTGCCACATATGGCAGCTCC---TGGAGCATTGCCTTCCGTAACTCCAGCTGT 179 consensus_10226#4 ------------------------------------------------------------ consensus_10226#0 GACGACCCCACTTCTGTACATGTACTCTACGC--AAAGCTGATGGAATCATCGGATT-CA 657 consensus_10226#2 GACGACCCCACTTCTGTACATGTACTCTACGC--AAAGCTGATGGAATCATCGGATT-CA 219 consensus_10226#3 GAAAACAAAACAACAATGTGTTTCTTAAACGCCAAAGGTTAAGGAATCCATGGGATT-CC 64 consensus_10226#1 TGTCATGCCCCAAGCTCTTACACGC---ATGCC-AGAATCAATCGGACAACCAAATAATA 202 consensus_10226#5 TGTCATGCCCCAAGCTCTTACACGC---ATGCC-AGAATCAATCGGACAACCAAATAATA 235 consensus_10226#4 ------------------------------------------------------------ consensus_10226#0 CAAAGACTACAAACAATTGCCAATGAACTATTCAATCTACTTGCTGAACAAAATCTA-AC 716 consensus_10226#2 CAAAGACTACAAACAATTGCCAATGAACTATTCAATCTACTTGCTGAACAAAATCTA-AC 278 consensus_10226#3 CAAAG-CTTCAAACAATTGCCCAATAACTTTTCAATTTGCTTGGTTAACAAAAATCA-AC 122 consensus_10226#1 CCATATATATAAACAATATGAATGAAAAGATAAAGTGTGATGAATTAAAGAAATCCCTAT 262 consensus_10226#5 CCATATATATAAACAATATGAATGAAAAGATAAAGTGTGATGAATTAAAGAAATCCCTAT 295 consensus_10226#4 ------------------------------------------------------------ consensus_10226#0 CAGC---ACTGGGTCTTATCGTCC-AGATAATAATGTAAAATTACATATGACTTTACTTA 772 consensus_10226#2 CAGC---ACTGGGTCTTATCGTCC-AGATAATAATGTAAAATTACATATGACTTTACTTA 334 consensus_10226#3 CCACCA-ACTGGTTCTAATTGTCCCAGATATTAAGGTAAAATTACATATGCCTTTACTTA 181 consensus_10226#1 GCGCAGTATTTGATCAGTTTGG-TCAAATACTGG-ATATAATTACAT-CACGAACACTTA 319 consensus_10226#5 GCGCAGTATTTGATCAGTTTGGGTCAAATACTGG-ATATAATTACAT-CACGAACACTTA 353 consensus_10226#4 --------------------------------------GCCTTGCATTGACCGAAGTGCT 22 ** *** consensus_10226#0 AT--------TCTAAATATCGTCAGGAAAAAAGCAATCGTGATGCTTTATTTCAAGG-TT 823 consensus_10226#2 AT--------TCTAAATATCGTCAGGAAAAAAGCAATCGTGATGCTTTATTTCAAGG-TT 385 consensus_10226#3 AT--------TTTAAATTTGTCAAGGAAAAAACAAATCGTGATGCTTTATTTCAAGGGTC 233 consensus_10226#1 AAATGCGCGGTCAAGCCTTTGTTGTCTTTGATGATATCAGTAGTGCGTCCACAGCACTTC 379 consensus_10226#5 A----------------------------------------------------------- 354 consensus_10226#4 GTGGACGCACTACTGATATCATCAAAGACAACAAAGGCTTGACCGCGCATTTTAAGTGTC 82 consensus_10226#0 TCTCACCTAATGCTCGTACATCTTTCAGTGTAACCGGAATTTTAAAAATTGCAGGAA--- 880 consensus_10226#2 TCTCACCTAATGCTCGTACATCTTTCAGTGTAACCGGAATTTTAAAAATTGCAGGAA--- 442 consensus_10226#3 TCTCACCTAATGCTCGTACATCTTCCAGTGTAACCGGAATTTTAAAAATTGCAGGAA--- 290 consensus_10226#1 GGTCAATGCAAGGCTTTCCATTGTATGAAAAACCCATGCGAATACATTTTGCCAAAGTTG 439 consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 CGTGATGTAAT-TATATCCAGTATTTGACCAAACTGATCAAATACTGCGCATAGGGAT-- 139 consensus_10226#0 --------ATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCG 932 consensus_10226#2 --------ATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCG 494 consensus_10226#3 --------ATTTTTACTTTACTGAAAATCAGTCTTTTCATCAAATTTGTTTGTGTGATCG 342 consensus_10226#1 ATTCAGATGTCATTGCTAAACGTAAAGGCACATTTGTACAAAGACCGAAAGCTGCATAAG 499 consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 --------TTCTTTAATTCA-TCACACTTTATCTTTTCATTCATATTGTTTATATATATG 190 consensus_10226#0 TTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGC-TGTTGTAAGCTAGAGTTCACTA 991 consensus_10226#2 TTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGC-TGTTGTAAGCTAGAGTTCACTA 553 consensus_10226#3 TTTGGCGTTTGATTCTTCAACTCAGTTTTATAAATGC-TGTTGTAAGCTAGAGTTCACTA 401 consensus_10226#1 AAGAAAANNGGGGCGCCGACCTCATTTTTATATGTGCGTGCAGTACGCTACAGTAGACTA 559 consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 GT-ATTATTTGGTTGTCCGATTGATTCTGGCA--TGCGTGTAAGAGCTTGGGTTTTTCAT 247 consensus_10226#0 CTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTT 1051 consensus_10226#2 CTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTT 613 consensus_10226#3 CTGGTGGTATCCATTGTTCTCACATGATAAAAATGTGAAAAGCTTTAGTTTGAAATATTT 461 consensus_10226#1 CTGGAGGTATCCATTGTTATCACATGATAAAAATGGCAAAAGCTTTAGTTTGAAATATTT 619 consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 ACAATGGAAAGCCTTGCATTGACCGAAGTGCTGTGGACGCACTACTGATATCATCAAAGA 307 consensus_10226#0 CAGTTTAAGTCTTTCGTCTACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCAG 1111 consensus_10226#2 CAGTTTAAGTCTTTCGTCTACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCAG 673 consensus_10226#3 CAGTTTAAGTCTTTCGTCTACGTTTTATGCTTTGTGTAATCTGAAAATCTGATTTCCCAG 521 consensus_10226#1 CAGTTTAAGTCTTTCGTCTACGTGGTATGCTCTGCGTAATCTGAAAAGCTGATTTTCCAC 679 consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 CAACA-AAGGCTCGACCGCGCATTTTAAGTGTT-CGTGATGTAA-----TTATATCCAGT 360 consensus_10226#0 ATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGACTATCCCATACTGTGTACAG 1171 consensus_10226#2 ATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGACTATCCCATACTGTGTACAG 733 consensus_10226#3 ATTATTTTTTGAGTTATTTGATGACAGTTTGATAGCAAGACTATCCCATTCTGTGTACAG 581 consensus_10226#1 ATTATCTTGTGAGTTATTTGATGACGCGGTGATAGCAAGACTATCCCATACTGGGTACAG 739 consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 ATT------TGACCAAACTGATCAAATACTGCGCATAGGGATTTCTTTAATTCATCACA- 413 consensus_10226#0 TTTTATTTTGAATCACTGTTCTCTTTAAATGCACAATCTTTCTACGTTTTCTGTGTAACT 1231 consensus_10226#2 TTNTAATTTGAATCACTGNTCTCTTTAA-TGCACAATCTTTCTACNGTTTCTGTGTAACT 792 consensus_10226#3 TTTTATTTTGAATCACTGTTCTCTTTAAATGCACAATCTTTATACGTTTTTTGAGTAACC 641 consensus_10226#1 AATTATCTTGA-TCACTGGTCTCTTTAA----TGCACATCTATTTACGTAATTGGGGACT 794 consensus_10226#5 ------------------------------------------------------------ consensus_10226#4 CTTTATCTTT--TCATTCATAT-------------------------------------- 433 consensus_10226#0 GCGATATTCCAGAAAAGTAATTACTCAAATACATAAT-------- 1268 consensus_10226#2 GCGATATTCCAGAAAAGTAAT-ACTCAANTACATAT--------- 827 consensus_10226#3 CAGATCTTCCCGGCAAGTAATTATTCGCCAAAATAATAAATTTTA 686 consensus_10226#1 GCGATCTTCAGAAAAGATGACTCAATACATATAC----------- 828 consensus_10226#5 --------------------------------------------- consensus_10226#4 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||