These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 782 fasta sequence [TCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTCAGGAACAGCAGCCGCTCTTTCCACTTCCGTTTCGCACGTTTTTATTGTATTGTCTACATAGTTTTTCACTTCATTTATAGGTTGATGATACATCAATTGTTCATCTTCTTCCGTCCATTCTTCTAAGAGCTTTCTAGCACGGGCGCCAAATACCTTGACAATCAAGACACTCATAAACAAGAACGTAGTAAATTCCACGAAGTGACCATCGAATATCCATATCTCTTTGTTGATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGGGAACACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAAGTTCGCAAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATTAGTTACATCTTGTTCATATTGGTTTGCCATT] [+] EMBL CD136362 [TCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTT ] [-] EMBL CD136184 [ CCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTC ] [-] EMBL CD136275 [ TAGAGT GTTAT GGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTC ] [-] EMBL CD145896 [ GTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGCAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATATACAACCCAGTTCTCCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCCATGCTCTGTTCGG ] [-] EMBL CD136190 [ AAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAGGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTC ] [-] EMBL CD136226 [ AAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTC ] [+] EMBL CD170718 [ GATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTCAGGAACAGCAGCCGCTCTTTCCACTTCCGTTTCGCACGTTTTTATTGTATTGTCTACATAGTTTTTCACTTCATTTATAGGTTGATGATACATCAATTGTTCATCTTCTTCCGTCCATTCTTC ] [+] EMBL CD136386 [ gcggTTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACCTACATGTT ] [-] EMBL CD135809 [ acaatatcgTGTTCGGTACACCCTTTAAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTCAGGAACAGCAGCCGCTCTTTCCACTTCCGTTTCGCACGTTTTTATTGTATTGTCTACATAGTTTTTCACTTCATTTATAGGTTGACGCTACATCAATTG ] [-] EMBL CD134587 [ TGTCTACATAGTTTTTCACTTCATTTATAGGTTGATGATACATCAATTGTTCATCTTCTTCCGTCCATTCTTCTAAGAGCTTTCTAGCACGGGCGCCAAATACCTTGACAATCAAGACACTCATAAACAAGAACGTAGTAAATTCCACGAAGTGACCATCGAATATCCATATCTCTTTGTTGATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAA ] [+] EMBL CD120262 [ TGATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGGGAACACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAAGTTCGCAAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATTAGTTACATCTTGTTCATATTGGTTTGCCAT ] [-] EMBL CD120309 [ GATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGGGAACACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAGGTTCGCAAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATTAGGTACATCTTGTTCATATTGGTTAGCCATT] [-] EMBL CD120227 [ GATTAAAAACATAAACGAACCAAACATAAACATATGTGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGGGAGCACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAAGTTCGCAAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATTAGTTACATCTTGTTCATATTGGTTTGCCATT] consensusID : consensus_10229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [CTAATATATTGGTTTAAAATAGGCTGCTTCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTCCTTGGGCAAGAAGTGATTCTTTGACAACGTGATCTACACCCAGTTCACCAAAATGTGGTGGTTTTTTTTTTTTTTTGAAAAATCCCATTTATTGGGATCGGGAGAAAACGTGATCAGTGATTAGAGACGTAATATGAAATACTTCAGAATCGACTAATGGAGAAATGAATTCATTATAGTCCCTAAATACCAGAGGGGGGCCGGTACCAATCCCCTATGTAGTCGTATAAATTVCTGGCCGTCGTTAACCGTCTACTGGAAACCTGGCTAACCAATTAATCGTTGAACCTTCCTTTCGAGTGTAATAAGAGGCCCGACGTCCTTACAAGTG] [+] EMBL AI764919 [CTAATATATTGGTTTAAAATAGGCTGCTTCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTCCTTGGGCAAGAAGTGATTCTTTGACAACGTGATCTACACCCAGTTCACCAAAATGTGGTGGTTTTTTTTTTTTTTTGAAAAATCCCATTTATTGGGATCGGGAGAAAACGTGATCAGTGATTAGAGACGTAATATGAAATACTTCAGAATCGACTAATGGAGAAATGAATTCATTATAGTCCCTAAATACCAGAGGGGGGCCGGTACCAATCCCCTATGTAGTCGTATAAATTVCTGGCCGTCGTTAACCGTCTACTGGAAACCTGGCTAACCAATTAATCGTTGAACCTTCCTTTCGAGTGTAATAAGAGGCCCGACGTCCTTACAAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10229#0 ----------------------------TCCTCATCTAGAGTGGTTATGGGTTTGTAAAT 32 consensus_10229#1 CTAATATATTGGTTTAAAATAGGCTGCTTCCTCATCTAGAGTGGTTATGGGTTTGTAAAT 60 ******************************** consensus_10229#0 CGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAA 92 consensus_10229#1 CGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAA 120 ************************************************************ consensus_10229#0 TGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACC 152 consensus_10229#1 TGCGTTAGAGTGTCCTTTCCTTGGGCAAGAAGTGATTCTTTGACAACGTGATCTACA-CC 179 ****************** ******** ** * ******* ************ ** consensus_10229#0 CAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGT-A 211 consensus_10229#1 CAGTTCACCAAAATGTGGTGGTTTTTTTTTTTTTTTGAAAAATCCCATTTATTGGGATCG 239 ********** * ** ** * * **** * * ** * ** * * * consensus_10229#0 TTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTC 271 consensus_10229#1 GGAGAAAACGTGATCAGTGATTAGAGACGTAATATGAAATACTTCAGAAT---------C 290 ** * *** ** * ** * * **** **** ** * consensus_10229#0 AAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTCAGGAACAGCAGCCGCTCT 331 consensus_10229#1 GACTAATGGAGAAATGAATTCATTAT-AGTCCCTAAATACCAGAGGGGGGCCGGTACCAA 349 * * * * **** *** * * ** * ** ** * ** * * consensus_10229#0 TTCCACTTCCGTTTCGCACGTTTTTATTGTATTGTCTACATAGTTTTTCACTTCATTTAT 391 consensus_10229#1 TCCC----CTATGTAGT-CGTATAAATTVC--TGGC--CGTCGTTAACCGTCTACTGGAA 400 * ** * * * * *** * *** ** * * * *** * * * * consensus_10229#0 AGGTTGATGATACATCAATTGTTCATCTTCTTCCGTCCATTCTTCTAAGAGCTTTCTAGC 451 consensus_10229#1 ACCTGGCTAACCAATTAATCGTTGAACCT-TCCTTTCGAGTGTAATAAGAGGCCCGACGT 459 * * * * * ** *** *** * * * * * ** * * * ****** * consensus_10229#0 ACGGGCGCCAAATACCTTGACAATCAAGACACTCATAAACAAGAACGTAGTAAATTCCAC 511 consensus_10229#1 CCTTAC---AAGTG---------------------------------------------- 470 * * ** * consensus_10229#0 GAAGTGACCATCGAATATCCATATCTCTTTGTTGATTAAAAACATAAACGAACCAAACAT 571 consensus_10229#1 ------------------------------------------------------------ consensus_10229#0 AAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGG 631 consensus_10229#1 ------------------------------------------------------------ consensus_10229#0 GAACACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAAGTTCGC 691 consensus_10229#1 ------------------------------------------------------------ consensus_10229#0 AAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATT 751 consensus_10229#1 ------------------------------------------------------------ consensus_10229#0 AGTTACATCTTGTTCATATTGGTTTGCCATT 782 consensus_10229#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||