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Schistosoma mansoni
cluster # 10229 cluster # 10229       Sequences # 14       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10229#0 length = 782 sequences # 13  
consensus_10229#1 length = 470 sequences # 1  

consensusID : consensus_10229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 782
fasta sequence
                              [TCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTCAGGAACAGCAGCCGCTCTTTCCACTTCCGTTTCGCACGTTTTTATTGTATTGTCTACATAGTTTTTCACTTCATTTATAGGTTGATGATACATCAATTGTTCATCTTCTTCCGTCCATTCTTCTAAGAGCTTTCTAGCACGGGCGCCAAATACCTTGACAATCAAGACACTCATAAACAAGAACGTAGTAAATTCCACGAAGTGACCATCGAATATCCATATCTCTTTGTTGATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGGGAACACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAAGTTCGCAAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATTAGTTACATCTTGTTCATATTGGTTTGCCATT]

[+] EMBL CD136362             [TCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD136184             [ CCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD136275             [        TAGAGT GTTAT GGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD145896             [            GTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGCAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATATACAACCCAGTTCTCCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCCATGCTCTGTTCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD136190             [                            AAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAGGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD136226             [                            AAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD170718             [                                                                                                                            GATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTCAGGAACAGCAGCCGCTCTTTCCACTTCCGTTTCGCACGTTTTTATTGTATTGTCTACATAGTTTTTCACTTCATTTATAGGTTGATGATACATCAATTGTTCATCTTCTTCCGTCCATTCTTC                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD136386             [                                                                                                                          gcggTTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACCTACATGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD135809             [                                                                                                                                                                                                                            acaatatcgTGTTCGGTACACCCTTTAAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTCAGGAACAGCAGCCGCTCTTTCCACTTCCGTTTCGCACGTTTTTATTGTATTGTCTACATAGTTTTTCACTTCATTTATAGGTTGACGCTACATCAATTG                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD134587             [                                                                                                                                                                                                                                                                                                                                                                           TGTCTACATAGTTTTTCACTTCATTTATAGGTTGATGATACATCAATTGTTCATCTTCTTCCGTCCATTCTTCTAAGAGCTTTCTAGCACGGGCGCCAAATACCTTGACAATCAAGACACTCATAAACAAGAACGTAGTAAATTCCACGAAGTGACCATCGAATATCCATATCTCTTTGTTGATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAA                                                                                                                                                               ]
[+] EMBL CD120262             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGGGAACACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAAGTTCGCAAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATTAGTTACATCTTGTTCATATTGGTTTGCCAT ]
[-] EMBL CD120309             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGGGAACACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAGGTTCGCAAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATTAGGTACATCTTGTTCATATTGGTTAGCCATT]
[-] EMBL CD120227             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GATTAAAAACATAAACGAACCAAACATAAACATATGTGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGGGAGCACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAAGTTCGCAAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATTAGTTACATCTTGTTCATATTGGTTTGCCATT]


>consensus_10229#0 TCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAG CTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTTCTTGGGCAG GAGTGATTCCTTTGACCACGTGATCTACAACCCAGTTCACCATATGTTGTTGAATATAAC GTTTTCGAGTATTTTCACGTTCAACATGGTATTCTAAGCGGCGATGCACTGTTCGGTACA CACTTTGAAGGCGTTCACGATAAGTGGCTTCAAGTTGTAAGGCAATGTTTTCTTCCTTAG CACGTACATGTTCAGGAACAGCAGCCGCTCTTTCCACTTCCGTTTCGCACGTTTTTATTG TATTGTCTACATAGTTTTTCACTTCATTTATAGGTTGATGATACATCAATTGTTCATCTT CTTCCGTCCATTCTTCTAAGAGCTTTCTAGCACGGGCGCCAAATACCTTGACAATCAAGA CACTCATAAACAAGAACGTAGTAAATTCCACGAAGTGACCATCGAATATCCATATCTCTT TGTTGATTAAAAACATAAACGAACCAAACATAAACATATATGGCCCAGTGACACCGGTTT TATTGTAAAATGGTCGAAACCAAGAGTCAGGGAACACACCCATCCTGACTTTGGGATGAC AACGAGCTAATTTGAAAGTTGGGAAGTTCGCAAAATCACGTTCATTGCCATAATATATTT CATCAGCTTTGGCCCATTTTGCGATAGAATTAGTTACATCTTGTTCATATTGGTTTGCCA TT



consensusID : consensus_10229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence
                              [CTAATATATTGGTTTAAAATAGGCTGCTTCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTCCTTGGGCAAGAAGTGATTCTTTGACAACGTGATCTACACCCAGTTCACCAAAATGTGGTGGTTTTTTTTTTTTTTTGAAAAATCCCATTTATTGGGATCGGGAGAAAACGTGATCAGTGATTAGAGACGTAATATGAAATACTTCAGAATCGACTAATGGAGAAATGAATTCATTATAGTCCCTAAATACCAGAGGGGGGCCGGTACCAATCCCCTATGTAGTCGTATAAATTVCTGGCCGTCGTTAACCGTCTACTGGAAACCTGGCTAACCAATTAATCGTTGAACCTTCCTTTCGAGTGTAATAAGAGGCCCGACGTCCTTACAAGTG]

[+] EMBL AI764919             [CTAATATATTGGTTTAAAATAGGCTGCTTCCTCATCTAGAGTGGTTATGGGTTTGTAAATCGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAATGCGTTAGAGTGTCCTTTCCTTGGGCAAGAAGTGATTCTTTGACAACGTGATCTACACCCAGTTCACCAAAATGTGGTGGTTTTTTTTTTTTTTTGAAAAATCCCATTTATTGGGATCGGGAGAAAACGTGATCAGTGATTAGAGACGTAATATGAAATACTTCAGAATCGACTAATGGAGAAATGAATTCATTATAGTCCCTAAATACCAGAGGGGGGCCGGTACCAATCCCCTATGTAGTCGTATAAATTVCTGGCCGTCGTTAACCGTCTACTGGAAACCTGGCTAACCAATTAATCGTTGAACCTTCCTTTCGAGTGTAATAAGAGGCCCGACGTCCTTACAAGTG]


>consensus_10229#1 CTAATATATTGGTTTAAAATAGGCTGCTTCCTCATCTAGAGTGGTTATGGGTTTGTAAAT CGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAA TGCGTTAGAGTGTCCTTTCCTTGGGCAAGAAGTGATTCTTTGACAACGTGATCTACACCC AGTTCACCAAAATGTGGTGGTTTTTTTTTTTTTTTGAAAAATCCCATTTATTGGGATCGG GAGAAAACGTGATCAGTGATTAGAGACGTAATATGAAATACTTCAGAATCGACTAATGGA GAAATGAATTCATTATAGTCCCTAAATACCAGAGGGGGGCCGGTACCAATCCCCTATGTA GTCGTATAAATTVCTGGCCGTCGTTAACCGTCTACTGGAAACCTGGCTAACCAATTAATC GTTGAACCTTCCTTTCGAGTGTAATAAGAGGCCCGACGTCCTTACAAGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10229#0      ----------------------------TCCTCATCTAGAGTGGTTATGGGTTTGTAAAT 32
consensus_10229#1      CTAATATATTGGTTTAAAATAGGCTGCTTCCTCATCTAGAGTGGTTATGGGTTTGTAAAT 60
                                                   ********************************

consensus_10229#0      CGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAA 92
consensus_10229#1      CGCTAAACGGGTGTCGTTACTTTGGAAGCTTGAGCCAACCGTTTCAATTCGTTGATACAA 120
                       ************************************************************

consensus_10229#0      TGCGTTAGAGTGTCCTTTTCTTGGGCAGGAGTGATTCCTTTGACCACGTGATCTACAACC 152
consensus_10229#1      TGCGTTAGAGTGTCCTTTCCTTGGGCAAGAAGTGATTCTTTGACAACGTGATCTACA-CC 179
                       ****************** ******** **     * ******* ************ **

consensus_10229#0      CAGTTCACCATATGTTGTTGAATATAACGTTTTCGAGTATTTTCACGTTCAACATGGT-A 211
consensus_10229#1      CAGTTCACCAAAATGTGGTGGTTTTTTTTTTTTTTTGAAAAATCCCATTTATTGGGATCG 239
                       ********** *   ** **  * *    ****   * *   ** * ** *    * *  

consensus_10229#0      TTCTAAGCGGCGATGCACTGTTCGGTACACACTTTGAAGGCGTTCACGATAAGTGGCTTC 271
consensus_10229#1      GGAGAAAACGTGATCAGTGATTAGAGACGTAATATGAAATACTTCAGAAT---------C 290
                           **   * ***      ** *  **  * * ****    ****  **         *

consensus_10229#0      AAGTTGTAAGGCAATGTTTTCTTCCTTAGCACGTACATGTTCAGGAACAGCAGCCGCTCT 331
consensus_10229#1      GACTAATGGAGAAATGAATTCATTAT-AGTCCCTAAATACCAGAGGGGGGCCGGTACCAA 349
                        * *  *   * ****  *** *  * **  * ** **      *    ** *   *   

consensus_10229#0      TTCCACTTCCGTTTCGCACGTTTTTATTGTATTGTCTACATAGTTTTTCACTTCATTTAT 391
consensus_10229#1      TCCC----CTATGTAGT-CGTATAAATTVC--TGGC--CGTCGTTAACCGTCTACTGGAA 400
                       * **    *  * * *  *** *  ***    ** *  * * ***   *   *  *  * 

consensus_10229#0      AGGTTGATGATACATCAATTGTTCATCTTCTTCCGTCCATTCTTCTAAGAGCTTTCTAGC 451
consensus_10229#1      ACCTGGCTAACCAATTAATCGTTGAACCT-TCCTTTCGAGTGTAATAAGAGGCCCGACGT 459
                       *  * * * *   ** *** *** * * * * *  ** * * *  ******       * 

consensus_10229#0      ACGGGCGCCAAATACCTTGACAATCAAGACACTCATAAACAAGAACGTAGTAAATTCCAC 511
consensus_10229#1      CCTTAC---AAGTG---------------------------------------------- 470
                        *   *   ** *                                               

consensus_10229#0      GAAGTGACCATCGAATATCCATATCTCTTTGTTGATTAAAAACATAAACGAACCAAACAT 571
consensus_10229#1      ------------------------------------------------------------
                                                                                   

consensus_10229#0      AAACATATATGGCCCAGTGACACCGGTTTTATTGTAAAATGGTCGAAACCAAGAGTCAGG 631
consensus_10229#1      ------------------------------------------------------------
                                                                                   

consensus_10229#0      GAACACACCCATCCTGACTTTGGGATGACAACGAGCTAATTTGAAAGTTGGGAAGTTCGC 691
consensus_10229#1      ------------------------------------------------------------
                                                                                   

consensus_10229#0      AAAATCACGTTCATTGCCATAATATATTTCATCAGCTTTGGCCCATTTTGCGATAGAATT 751
consensus_10229#1      ------------------------------------------------------------
                                                                                   

consensus_10229#0      AGTTACATCTTGTTCATATTGGTTTGCCATT 782
consensus_10229#1      -------------------------------
                                                      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)