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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 919 fasta sequence
[ATGCTACTGGTCGTCGCCAAAAGGAGTAGCGGACATTTTCAAAAGTGCTTGGATTACCTAGTTTACTTACTAACTGACTTTCATTTTATGTCCACCTTTATTCTTTAGGCATTCCAATGAGGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGATCATTCATCCGTAATGGTTGTGAA-GATTTTTTACTGGGTCTTGATCCACCACCTTTTCCTCAGACCGAAGCTAATATTGATTATGTATGTGATTCTTTCCAATGGCGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGATCCGATTTGACTG-AAAAAAAAGAAGATAATTACTTGGAAAAT]
[+] EMBL CD179256 [ATGCTACTGGTCGTCGCCAAAAGGAGTAGCGGACATTTTCAAAAGTGCTTGGATTACCTAGTTTACTTACTAACTGACTTTCATTTTATGTCCACCTTTATTCTTTAGGCATTCCAATGAGGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTA ]
[-] EMBL CD170889 [ CTACTGGTCGTCGCCAAAAGGAGTAGCGGACATTTTCAAAAGTGCTTGGATTACCTAGTTTACTTACTAACTGACTTTCATTTTATGTCCACCTTTATTCTTTAGGCATTCCAATGAGGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCGTCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGA ]
[+] EMBL CD121065 [ GTTTACTTACTAACTGACTTTCATTTTATGTCCACCTTTATTCTTTAGGCATTCCAATGAGGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCAAAATGTCGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAAAACCACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGC ]
[+] EMBL CD121080 [ GTTTACTTACTAACTGACTTTCATTTTATGTCCACCTTTATTCTTTAGGCATTCCAATGAGGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGGATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGC ]
[+] EMBL CD126756 [ TCCAATGAGGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCCTCCTC ]
[+] EMBL CD071552 [ GTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGATCATTCATCCGTAATGGTTGTGAA GATTTTTTACTGGGTCTTGATCCACCACCTTTTCCTCAGACCGAAGCTAATATTGATTATGTATGTGATTCTTTCCAATGGCGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCACTTATTATCAAAATATCCAT ]
[-] EMBL CD194955 [ GATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGATCATTCATCCGTAATGGTTGTGAA GATTTTTTAC ]
[+] EMBL CD185401 [ TTCATCCGTAATGGTTGTGAA GATTTTTTACTGGGTCTTGATCCACCACCTTTTCCTCAGACCGAAGCTAATATTGATTATGTATGTGATTCTTTCCAATGGCGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGATCCGATTTGACTG AAAAAAAAGAAGATAATTACTTGGAAAA ]
[+] EMBL CD185442 [ TTCATCCGTAATGGTTGTGAA GATTTTTTACTGGGTCTTGATCCACCACCTTTTCCTCAGACCGAAGCTAATATTGATTATGTATGTGATTCTTTCCAATGGCGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGATCCGATTTGACTGAAAAAAAAAGAAGATAATTACTTGGAAAA ]
[+] EMBL CD133843 [ TCATCCGTAATGGTTGTGAAGGATTTTTTACTGGGTCTTGATCCACCACCTTTTCCTGAGACCGAAGCTAATATTGATTATGTATGTGATTCTTTCCAATGGCGTCGTTTGACATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAGCTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAGAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGATCCGATTTGACTG AAAAAAAAGAAGATTATTACTTGGAAAA ]
[-] EMBL CD185368 [ gATCAAAACACCCTTGCATATGTTTCCCACCATTACCGGAGAAAGCCATTACAGATCCGATTTGACTG AGAAAAAAGAAGATAATTACTTGGAAAAT]
consensusID : consensus_10248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence
[GAGCTATTGTTTAGTCTGAAATAAAAATTCTGTAGGTGCGTGTGATTTACGACTTTANTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCANAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCTTCCTTTGCNTGNTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACNTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGAAATGGAAATTAGGCAAACGTGAAGCAGAAACTGACAAATTACAAGGTTTACGTTTTTATTTTGCAGTGGAATCAAAAAGTGGACAAACACCTC]
[-] EMBL CD151619 [GAGCTATTGTTTAGTCTGAAATAAAAATTCTGTAGGTGCGTGTGATTTACGACTTTANTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTGGAGAGGAACTCACAATCACGAATCANAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCTTCCTTTGCNTGNTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACNTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGAAATGGAAATTAGGCAAACGTGAAGCAGAAACTGACAAATTACAAGGTTTACGTTTTTATTTTGCAGTGGAATCAAAAAGTGGACAAACACCTC]
[-] EMBL CD151693 [ AGCTATGGTNTAGTCTGGAAT AAAATTCTGTAGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTGACTGTTAGTACTGGAGAGGAACTCACAATCCTGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACGAATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAACCACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGATCGCTATGATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGGTTACTCAAACACAAGTCAGTAGAAGATATGAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGAAATGGAAATTAGGCAAACGTGAAGCAGAAACTGACAAATTACAAGGTTTACGTTTTTATTTTGCAGTGGAATCAAAAAGTGGACAAACACCTC]
consensusID : consensus_10248#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence
[GATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGTATGTATGTGATTCTTTCCAATGGCGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTAT]
[+] EMBL CD114719 [GATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAACCTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGAGGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAAGGTTTTTTCACAGTATGTATGTGATTCTTTCCAATGGCGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTTTCGTAAAGATTCAAAAATGAAGGGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACAAGTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10248#0 ATGCTACTGGTCGTCGCCAAAAGGAGTAGCGGACATTTTCAAAAGTGCTTGGATTACCTA 60
consensus_10248#2 ------------------------------------------------------------
consensus_10248#1 ------------------------------------------------------------
consensus_10248#0 GTTTACTTACTAACTGACTTTCATTTTATGTCCACCTTTATTCTTTAGGCATTCCAATGA 120
consensus_10248#2 ------------------------------------------------------------
consensus_10248#1 ---------------------------GAGCTATTGTTTAGTCTGAAATAAAAATTCTGT 33
consensus_10248#0 GGGTGCGTGTGATTTACGACTTTATTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTG 180
consensus_10248#2 ------------------------------------------------------------
consensus_10248#1 AGGTGCGTGTGATTTACGACTTTANTGCTCAATGGAATGGTGAGCTAACTGTTAGTACTG 93
consensus_10248#0 GAGAGGAACTCACAATCACGAATCAAAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACG 240
consensus_10248#2 ------------------------------------------------------------
consensus_10248#1 GAGAGGAACTCACAATCACGAATCANAATGTTGGATCAGGGTGGTGGCAAGCAGTCAACG 153
consensus_10248#0 AATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAAC 300
consensus_10248#2 ------------------------------------------------------------
consensus_10248#1 AATTTGGAAAGGAAGGTCTCATTCCATCAGAATTTGTTGAAATTATTGAGTTACCAGAAC 213
consensus_10248#0 CACCAACCCCACCTCCTCCTCTGCCTGCTACTGAATTCGGGAAGGAGGTTGATCGCTATG 360
consensus_10248#2 ------------------------------------------------------------
consensus_10248#1 CACCAACCCCACCTCTTCCTTTGCNTGNTACTGAATTCGGGAAGGAGGTTGATCGCTATG 273
consensus_10248#0 ATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAAC 420
consensus_10248#2 --------GATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAA-C 51
consensus_10248#1 ATGAATGGGATGATGAGTGGGATAGTGATGAAAATGATCTTCCCAGTTCGAACAAAAAAC 333
************************************************** *
consensus_10248#0 CTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGA 480
consensus_10248#2 CTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGA 111
consensus_10248#1 NTAATGACCAATATCAACAACCAGTTGAATGCAGTACATCGCAAACCGGAGGCAAGCAGA 393
***********************************************************
consensus_10248#0 GGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAA 540
consensus_10248#2 GGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAA 171
consensus_10248#1 GGGACCACCTTGTGTCAGCGTCTAATAATGTTGATTACGTACGCAACGCACTTATACGAA 453
************************************************************
consensus_10248#0 GGTTTTTTCACAGATCATTCATCCGTAATGGTTGTGAAGATTTTTTACTGGGTCTTGATC 600
consensus_10248#2 GGTTTTTTCACAG----------------------------------------------- 184
consensus_10248#1 GGTTTTTTCACAGGTTACTCAAACACAAGTCAGTAGAAGATA------------------ 495
*************
consensus_10248#0 CACCACCTTTTCCTCAGACCGAAGCTAATATTGATTATGTATGT-GATTCTTTCCAATGG 659
consensus_10248#2 -----------------------------------TATGTATGT-GATTCTTTCCAATGG 208
consensus_10248#1 -----------------------------------TAAACATTTTGATTGGCTTCATTCC 520
** ** * **** * ** *
consensus_10248#0 CGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTT-TCGTAAAGATTCAAAAAT 718
consensus_10248#2 CGTCGTTTGTCATCCGATCTCACCAGTTGTATTTCATCGTT-TCGTAAAGATTCAAAAAT 267
consensus_10248#1 CGTTTATTATCAAAATATCCATGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACA 580
*** ** *** *** ** ****** ** * ** ** * * * ** *
consensus_10248#0 GAAG-GGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACA-A 776
consensus_10248#2 GAAG-GGGATTAAAAGTTTTATCGCCTATCAAATAACTAATTCAGTTACTCAAACACA-A 325
consensus_10248#1 GAAATGGAAATTAGGCAAACGTGAAGCAGAAACTGACAAATTACAAGGTTTACGTTTTTA 640
*** ** * * * * * ** * ** **** * * *
consensus_10248#0 GTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTATCAAAATATCCA 836
consensus_10248#2 GTCAGTAGAAGATATAAACATTTTGATTGGCTTCATTCCCGTTTATTAT----------- 374
consensus_10248#1 TTTTGCAGTGGA-ATCAAAAAGTGGACAAACACCTC------------------------ 675
* * ** ** ** ** * * ** * *
consensus_10248#0 TGCATTTGTATCCCACCATTACCGGAGAAAGCCATTACAGATCCGATTTGACTGAAAAAA 896
consensus_10248#2 ------------------------------------------------------------
consensus_10248#1 ------------------------------------------------------------
consensus_10248#0 AAGAAGATAATTACTTGGAAAAT 919
consensus_10248#2 -----------------------
consensus_10248#1 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||